Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

56217445 .. 56219794

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGACCAAGATGTAACAAAGAAGTTCAAGGGATTGGATGGGCATGCAGTGCCAATTGCATATGTAAGTTCCAAGGGAAATTCTGGGCACCCAGTTCTTGAGGCATCCAAGAGTTTCGAAGAGAATAAGGATGGTTTGACAGGTGGAGCTGATGGAAACACTCAAGCAGACCACCACATGCAAGGGAAAAATGGGTCTGACAGCGTGCGAACTGCTGATAATGATATGAAAGACCATCCCCAGGCCCATCCAAACAATGAAGGGGAAATAAATAGGAACTTCACAACCTCTAATGATCTTGTTCGAGTACCTATTGGTTCTCCCTATGAGAAAATCGCAACTAGCACACCTTTCCTCTCTCCTTCTGCTGGTGAAAGGTTGCCTTTTGATGCAGTGGTTCTGGATGAAAAGCAATTGAAACGAGAGAAAAGAAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGGCTGAATACGAGGAGATGGTGAAAAGTTGTGATTCTTTAAGCACAGAACAGATGGACCTTAAATCTGAACTAGATCAATTGAAAGTGGATGCAGAAAAACTGAGGCTTGAAAATGCTGCACTAAGGGAGCAGCTGAAAAATGCACAGGTAATGCAGGAAGGAGGGAACGCTTCCCCTAAGACTGAAGGTGATTTCACCCTGCCAAATGAGGCTAAGAACATACTTACCAATCTGGGTTCTGTAAGCAGTAATGCTCCGCCGGATTGTGAGACACATGAAACTTCTATTTCTGAAACAATTACCCGGCTCCATCAGTTGTTGGAATCAAGCTCTAGGACTGATGCTGTTGCTGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

280

Amino Acids

30.66

Weight (kDa)

5.58

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	136 - 198	2.9e-15	bZIP transcription factor
bZIP_2	PF07716	140 - 188	9.3e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	241, 368
AgsI	TTSAA	4 cut(s)	28, 418, 562, 590
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	149, 613, 810
AluI	AGCT	3 cut(s)	149, 613, 810
Alw26I	GTCTC	1 cut(s)	743
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	596, 610, 830
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	4, 244, 535
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	4 cut(s)	383, 511, 667, 680
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	4, 535
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	583, 622, 817
BccI	CCATC	8 cut(s)	32, 125, 146, 243, 255, 490, 526, 798
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	5 cut(s)	342, 465, 551, 813, 834
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	3 cut(s)	597, 611, 831
BlsI	GCNGC	3 cut(s)	598, 612, 832
Bme1390I	CCNGG	2 cut(s)	242, 784
Bme18I	GGWCC	2 cut(s)	4, 535
BmgT120I	GGNCC	3 cut(s)	4, 244, 535
BmiI	GGNNCC	2 cut(s)	89, 788
BmrFI	CCNGG	2 cut(s)	242, 784
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	4 cut(s)	113, 379, 559, 811
BmuI	ACTGGG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	119, 147
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	72, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 368
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	72, 240
BseGI	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
BseLI	CCNNNNNNNGG	2 cut(s)	241, 368
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	583, 622, 817
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	740, 784
BslI	CCNNNNNNNGG	2 cut(s)	241, 368
BsmAI	GTCTC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	295, 461, 553
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	89, 788
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	72, 240
BssMI	GATC	3 cut(s)	295, 461, 553
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	45, 206, 480
BstDEI	CTNAG	4 cut(s)	581, 602, 657, 693
BstF5I	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
BstKTI	GATC	3 cut(s)	298, 464, 556
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	3 cut(s)	295, 461, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 830
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	47, 181
BstSCI	CCNGG	2 cut(s)	240, 782
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	583, 622, 817
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
BtsI	GCAGTG	2 cut(s)	54, 399
BtsIMutI	CAGTG	2 cut(s)	54, 399
Cac8I	GCNNGC	3 cut(s)	45, 206, 480
Cfr13I	GGNCC	3 cut(s)	4, 244, 535
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	3 cut(s)	44, 178, 755
CviJI	RGCY	9 cut(s)	149, 245, 440, 482, 586, 613, 692, 787, 810
CviKI_1	RGCY	9 cut(s)	149, 245, 440, 482, 586, 613, 692, 787, 810
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	4 cut(s)	581, 602, 657, 693
DpnI	GATC	3 cut(s)	297, 463, 555
DpnII	GATC	3 cut(s)	295, 461, 553
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	4, 535
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	47, 181, 758
FaiI	YATR	8 cut(s)	45, 61, 63, 179, 227, 327, 701, 756
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FatI	CATG	3 cut(s)	43, 177, 754
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	597, 611, 831
FokI	GGATG	8 cut(s)	50, 91, 143, 222, 234, 416, 481, 581
Fsp4HI	GCNGC	3 cut(s)	597, 611, 831
FspBI	CTAG	5 cut(s)	342, 465, 551, 813, 834
GluI	GCNGC	3 cut(s)	597, 611, 831
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	740, 784
Hin1II	CATG	3 cut(s)	47, 181, 758
HinfI	GANTC	3 cut(s)	449, 512, 803
HpaII	CCGG	2 cut(s)	740, 784
HphI	GGTGA	4 cut(s)	383, 511, 667, 680
Hpy188I	TCNGA	3 cut(s)	199, 547, 772
Hpy188III	TCNNGA	2 cut(s)	98, 401
HpyAV	CCTTC	4 cut(s)	254, 372, 632, 659
HpyCH4V	TGCA	9 cut(s)	47, 59, 181, 392, 455, 572, 599, 623, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 830
HpyF3I	CTNAG	4 cut(s)	581, 602, 657, 693
Hsp92II	CATG	3 cut(s)	47, 181, 758
Kzo9I	GATC	3 cut(s)	295, 461, 553
LmnI	GCTCC	4 cut(s)	146, 607, 739, 792
Lsp1109I	GCAGC	3 cut(s)	583, 622, 817
LweI	GCATC	4 cut(s)	113, 379, 559, 811
MaeI	CTAG	5 cut(s)	342, 465, 551, 813, 834
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	297, 463, 555
MboI	GATC	3 cut(s)	295, 461, 553
MboII	GAAGA	1 cut(s)	131
MfeI	CAATTG	3 cut(s)	54, 413, 557
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	5 cut(s)	54, 79, 413, 557, 777
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	8 cut(s)	94, 298, 365, 465, 484, 576, 635, 682
MseI	TTAA	2 cut(s)	518, 540
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	2 cut(s)	740, 784
MspR9I	CCNGG	2 cut(s)	242, 784
MunI	CAATTG	3 cut(s)	54, 413, 557
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	49, 830
NciI	CCSGG	1 cut(s)	784
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	295, 461, 553
NlaIII	CATG	3 cut(s)	47, 181, 758
NlaIV	GGNNCC	2 cut(s)	89, 788
NspI	RCATGY	2 cut(s)	47, 181
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	449, 512, 803
PkrI	GCNGC	3 cut(s)	598, 612, 832
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	89, 788
PspPI	GGNCC	3 cut(s)	4, 244, 535
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	518, 540
SatI	GCNGC	3 cut(s)	597, 611, 831
Sau3AI	GATC	3 cut(s)	295, 461, 553
Sau96I	GGNCC	3 cut(s)	4, 244, 535
ScrFI	CCNGG	2 cut(s)	242, 784
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	4 cut(s)	113, 379, 559, 811
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	2 cut(s)	4, 535
SmlI	CTYRAG	2 cut(s)	98, 162
SmoI	CTYRAG	2 cut(s)	98, 162
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	5 cut(s)	54, 79, 413, 557, 777
SsiI	CCGC	1 cut(s)	737
SspMI	CTAG	5 cut(s)	342, 465, 551, 813, 834
StyD4I	CCNGG	2 cut(s)	240, 782
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	2 cut(s)	117, 304
TasI	AATT	5 cut(s)	54, 79, 413, 557, 777
TfiI	GAWTC	3 cut(s)	449, 512, 803
Tru1I	TTAA	2 cut(s)	518, 540
Tru9I	TTAA	2 cut(s)	518, 540
TscAI	CASTG	2 cut(s)	54, 399
TseI	GCWGC	3 cut(s)	596, 610, 830
TspDTI	ATGAA	4 cut(s)	242, 273, 420, 771
TspRI	CASTG	2 cut(s)	54, 399
VpaK11BI	GGWCC	2 cut(s)	4, 535
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	47, 181
XspI	CTAG	5 cut(s)	342, 465, 551, 813, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.