Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

54706885 .. 54710151

Gene Structure 3267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGACCAAGATGTAACAAAGAAGTTCAAGGGATTGGATGGGCATGCAGTACCAATTGCATATGTAAGTTCCAAGGGAAATTCTGGGCACCCAGTTCTTGAGGCATCCAAGAGTTTCGAAGAGAAGAAGGATGGTTTGACAGGTGGAGCTGATGGAAACACTCGAGCAGACCACCACATGCAAGGGAAAAATGGGTCTGCTGATAATGATATGAAAGACCATCCCCAGGTCCATCCAAACAATGAAGGGGAAATAAATAGGAACTTCACAACCTCTAATGATCTTGTGCGAGTACCTATTGGTTCTCCCTATGAGAAAATCGCAACTAGCACACCTTTCTTCTCTCCTTCTGCTGGTGAAAGGTTGCCTTTTGATGCAATGGTTCTGGATGAAAAGCAATTGAAACGAGAGAAAAGAAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGCGGAAGCAGGCTGAATACGAGGAGCTGGTGAAAAGCTGTGATTCTTTAAGCACAGAACAGATGGACCTTAAATCTGAATTAGATCAATTGAAAGTGGATGCAGAAAAAATGAGGCTTGAAAATGCTGCATTAAGGGAGCAGCTGAAAAATGCACAGGTAGTGCAGGAAGGAGGGAACGCTTCCCCTAAGACTGAAGGTGACTTCACCCTGCCAAATGATGCTAAGAACATACTTACCAATTTGGGTTCTGTAAGCAGTAATGCTCCGCCGGATTGTGAGACACATGAAACTTCTATTTCTGAAACAGTTACCCGGCTCCATCAGTTGTTGGAATCAAGCTCTAGGACTGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

274

Amino Acids

30.18

Weight (kDa)

5.82

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	131 - 193	1.3e-15	bZIP transcription factor
bZIP_2	PF07716	135 - 183	4.2e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	2 cut(s)	457, 722
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	51, 294
AfiI	CCNNNNNNNGG	2 cut(s)	226, 353
AgsI	TTSAA	4 cut(s)	28, 403, 547, 575
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	5 cut(s)	149, 481, 492, 598, 795
AluI	AGCT	5 cut(s)	149, 481, 492, 598, 795
Alw26I	GTCTC	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	581, 595, 815
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	4, 229, 520
AsuC2I	CCSGG	1 cut(s)	769
AsuHPI	GGTGA	4 cut(s)	368, 496, 652, 665
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	3 cut(s)	4, 229, 520
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	568, 607, 802
BccI	CCATC	7 cut(s)	32, 125, 146, 228, 240, 511, 783
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	769
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	4 cut(s)	327, 450, 798, 819
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	3 cut(s)	582, 596, 816
BlsI	GCNGC	3 cut(s)	583, 597, 817
Bme1390I	CCNGG	2 cut(s)	227, 769
Bme18I	GGWCC	3 cut(s)	4, 229, 520
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	4, 229, 520
BmiI	GGNNCC	2 cut(s)	89, 773
BmrFI	CCNGG	2 cut(s)	227, 769
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	6 cut(s)	113, 364, 444, 544, 664, 796
BmuI	ACTGGG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	72, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 353
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	72, 225
BseGI	GGATG	8 cut(s)	43, 104, 136, 220, 232, 394, 459, 559
BseLI	CCNNNNNNNGG	2 cut(s)	226, 353
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	568, 607, 802
BsgI	GTGCAG	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	725, 769
BslI	CCNNNNNNNGG	2 cut(s)	226, 353
BsmAI	GTCTC	1 cut(s)	728
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	280, 446, 538
BspACI	CCGC	2 cut(s)	457, 722
BspLI	GGNNCC	2 cut(s)	89, 773
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	72, 225
BssMI	GATC	3 cut(s)	280, 446, 538
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	45, 465
BstDEI	CTNAG	2 cut(s)	642, 678
BstF5I	GGATG	8 cut(s)	43, 104, 136, 220, 232, 394, 459, 559
BstKTI	GATC	3 cut(s)	283, 449, 541
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	3 cut(s)	280, 446, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	815
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	2 cut(s)	47, 181
BstSCI	CCNGG	2 cut(s)	225, 767
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	568, 607, 802
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BtsCI	GGATG	8 cut(s)	43, 104, 136, 220, 232, 394, 459, 559
Cac8I	GCNNGC	2 cut(s)	45, 465
Cfr13I	GGNCC	3 cut(s)	4, 229, 520
Csp6I	GTAC	2 cut(s)	50, 293
CviAII	CATG	3 cut(s)	44, 178, 740
CviJI	RGCY	9 cut(s)	149, 425, 467, 481, 492, 571, 598, 772, 795
CviKI_1	RGCY	9 cut(s)	149, 425, 467, 481, 492, 571, 598, 772, 795
CviQI	GTAC	2 cut(s)	50, 293
DdeI	CTNAG	2 cut(s)	642, 678
DpnI	GATC	3 cut(s)	282, 448, 540
DpnII	GATC	3 cut(s)	280, 446, 538
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	711
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	4, 229, 520
Eco57I	CTGAAG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	47, 181, 743
FaiI	YATR	8 cut(s)	45, 61, 63, 179, 212, 312, 686, 741
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	3 cut(s)	43, 177, 739
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	582, 596, 816
FokI	GGATG	8 cut(s)	50, 91, 143, 207, 219, 401, 466, 566
Fsp4HI	GCNGC	3 cut(s)	582, 596, 816
FspBI	CTAG	4 cut(s)	327, 450, 798, 819
GluI	GCNGC	3 cut(s)	582, 596, 816
HapII	CCGG	2 cut(s)	725, 769
Hin1II	CATG	3 cut(s)	47, 181, 743
HinfI	GANTC	3 cut(s)	434, 497, 788
HpaII	CCGG	2 cut(s)	725, 769
HphI	GGTGA	4 cut(s)	368, 496, 652, 665
Hpy188I	TCNGA	2 cut(s)	532, 757
Hpy188III	TCNNGA	2 cut(s)	98, 386
HpyAV	CCTTC	5 cut(s)	121, 239, 357, 617, 644
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4V	TGCA	9 cut(s)	47, 59, 181, 377, 440, 557, 584, 608, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	815
HpyF3I	CTNAG	2 cut(s)	642, 678
Hsp92II	CATG	3 cut(s)	47, 181, 743
Kzo9I	GATC	3 cut(s)	280, 446, 538
LmnI	GCTCC	5 cut(s)	146, 478, 592, 724, 777
Lsp1109I	GCAGC	3 cut(s)	568, 607, 802
LweI	GCATC	6 cut(s)	113, 364, 444, 544, 664, 796
MaeI	CTAG	4 cut(s)	327, 450, 798, 819
MaeIII	GTNAC	3 cut(s)	13, 653, 763
MalI	GATC	3 cut(s)	282, 448, 540
MboI	GATC	3 cut(s)	280, 446, 538
MboII	GAAGA	3 cut(s)	131, 136, 331
MfeI	CAATTG	3 cut(s)	54, 398, 542
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	54, 79, 398, 533, 542, 694
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	5 cut(s)	94, 283, 469, 561, 620
MseI	TTAA	3 cut(s)	503, 525, 587
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	2 cut(s)	725, 769
MspR9I	CCNGG	2 cut(s)	227, 769
MunI	CAATTG	3 cut(s)	54, 398, 542
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	815
NciI	CCSGG	1 cut(s)	769
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	280, 446, 538
NlaIII	CATG	3 cut(s)	47, 181, 743
NlaIV	GGNNCC	2 cut(s)	89, 773
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	2 cut(s)	47, 181
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	434, 497, 788
PkrI	GCNGC	3 cut(s)	583, 597, 817
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	89, 773
PspPI	GGNCC	3 cut(s)	4, 229, 520
PspXI	VCTCGAGB	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	51, 294
RsaNI	GTAC	2 cut(s)	50, 293
SaqAI	TTAA	3 cut(s)	503, 525, 587
SatI	GCNGC	3 cut(s)	582, 596, 816
Sau3AI	GATC	3 cut(s)	280, 446, 538
Sau96I	GGNCC	3 cut(s)	4, 229, 520
ScrFI	CCNGG	2 cut(s)	227, 769
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	6 cut(s)	113, 364, 444, 544, 664, 796
Sfr274I	CTCGAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	3 cut(s)	4, 229, 520
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	98, 162
SmoI	CTYRAG	2 cut(s)	98, 162
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	6 cut(s)	54, 79, 398, 533, 542, 694
SsiI	CCGC	2 cut(s)	457, 722
SspMI	CTAG	4 cut(s)	327, 450, 798, 819
StyD4I	CCNGG	2 cut(s)	225, 767
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	763
TaqI	TCGA	2 cut(s)	117, 163
TasI	AATT	6 cut(s)	54, 79, 398, 533, 542, 694
TfiI	GAWTC	3 cut(s)	434, 497, 788
Tru1I	TTAA	3 cut(s)	503, 525, 587
Tru9I	TTAA	3 cut(s)	503, 525, 587
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	3 cut(s)	581, 595, 815
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	4 cut(s)	227, 258, 405, 756
VpaK11BI	GGWCC	3 cut(s)	4, 229, 520
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	47, 181
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	4 cut(s)	327, 450, 798, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.