Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

23621740 .. 23623535

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1099800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGGACAGCATGGACCAAGATGTAACAAAGAAGTTGAAGGGATCGGATGGAACTGCATTGCCAGTTGGATATGACAGTCCCAAGGACGGGAACCTAGTCCTTGAGGCATCAAAGAGTTTGGAACAAAAGGTTGATGGTTTGACTGATGGAAATGATGGCAACACTAAAGCAGAGCACTTCACTCAGAGGAACAATGGGTCGGAGAGCATGCAATCTGCTGAAAATGATGTGAAAGTTCATACTCAGGTCAGTCCTACAACTAAAGGGGAAACGAATGAGAATTCCAAAAGTGTTTCTGGTACTGCGCCTCCTGCTGTTGGTTACGTTGGAGCATCTCTCAGGCCGCCATATGAGACAATAGGAATTAGCACAGCTTTTGTTGCTCCTTCTGCTGGTTCTGGGTTGCCTTTTGGTGCACCTGTTCTGGTATGGAAATATTTACCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

151

Amino Acids

15.66

Weight (kDa)

4.93

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw21I	GWGCWC	2 cut(s)	180, 421
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	180, 421
BccI	CCATC	4 cut(s)	44, 131, 143, 152
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	2 cut(s)	119, 344
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	200, 260, 355
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	180, 421
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	180, 421
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	3 cut(s)	199, 259, 354
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	186, 246, 341
BstF5I	GGATG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
BstNSI	RCATGY	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	13, 211
CviJI	RGCY	2 cut(s)	346, 377
CviKI_1	RGCY	2 cut(s)	346, 377
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	186, 246, 341
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	16, 214
FaiI	YATR	7 cut(s)	14, 75, 212, 243, 352, 354, 433
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	12, 210
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	347
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	16, 214
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	3 cut(s)	49, 189, 205
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	34, 399
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	59, 214, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
HpyF3I	CTNAG	3 cut(s)	186, 246, 341
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	16, 214
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	332, 391
LpnPI	CCDG	9 cut(s)	78, 233, 285, 327, 328, 381, 387, 413, 435
LweI	GCATC	2 cut(s)	119, 344
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	25, 323
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	180, 421
MluCI	AATT	2 cut(s)	283, 366
MmeI	TCCRAC	3 cut(s)	49, 183, 310
MnlI	CCTC	3 cut(s)	100, 183, 321
MwoI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	16, 214
NlaIV	GGNNCC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	180, 421
SetI	ASST	7 cut(s)	99, 135, 252, 330, 379, 424, 448
SfaNI	GCATC	2 cut(s)	119, 344
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	2 cut(s)	283, 366
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	330
TasI	AATT	2 cut(s)	283, 366
TauI	GCSGC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.