Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Reverse (-)

4254920 .. 4257792

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07270.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATTATTATGAACAGCTTGCTGCTAGGCCCTCTTACCAAGATTCTCTCAAGGTTCTTGAGGCTGATATTCAGCATGCCAATATGCTGGCAGCTTCCATACCAAGAAGCAAGGGTGGTACGTTTCTTCAAATGAAATTGGTTTACAATCAGTTGGCACCAATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCATCATCATGTTTACTTGCAAGCTACTTGAATCTTTTTGACATAGTTATATATAAGGTGCACTCAGACGGGAGGGCAGATATCTCGTCTTATGGAAGAAAAGCTACCACCAGCCAATTCTACAATGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATTTAAAGATGATTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGACGTCGATTTGGAGCGGGAAAAGGAATGTGGCATCTGCTTAGAGCCTTGCACCAAAATGGTCTTGCCAAACTGCTGCCATGCCATGTGCATCAATTGCTACCGTGACTGGAACACAAGATCAGAGTCTTGCCCATTTTGCCGGGGAAGTATAAAGAGAGTGTATTCCGGGGACTTATGGGTTCTGACATGCGGAAGTGATGCGGTTGACACTCAAACTGTTTTAAAGGAGGACATGTTGCGATTTTATCTCTTTATTAACAGCCTGCCTAAGGATGTCCCTGACGCTCTATTCCTAATGTACTATGAGTACTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

253

Amino Acids

29.01

Weight (kDa)

5.29

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	148 - 195	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	150 - 189	2e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	3 cut(s)	454, 630, 641
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	3 cut(s)	121, 740, 749
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	3 cut(s)	131, 182, 226
AluBI	AGCT	5 cut(s)	19, 95, 219, 299, 433
AluI	AGCT	5 cut(s)	19, 95, 219, 299, 433
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	23, 92, 513
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	2 cut(s)	581, 607
AsuHPI	GGTGA	2 cut(s)	365, 367
AxyI	CCTNAGG	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	10, 104, 500
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BcnI	CCSGG	2 cut(s)	581, 607
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	24, 93, 514
BlsI	GCNGC	3 cut(s)	25, 94, 515
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	2 cut(s)	581, 607
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	581, 607
BmsI	GCATC	3 cut(s)	480, 537, 628
BpuEI	CTTGAG	2 cut(s)	35, 80
BpuMI	CCSGG	2 cut(s)	581, 607
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	349, 360, 580, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	551
Bse21I	CCTNAGG	1 cut(s)	708
BseDI	CCNNGG	4 cut(s)	349, 360, 580, 606
BseGI	GGATG	2 cut(s)	370, 718
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	10, 104, 500
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	580, 606
BslFI	GGGAC	3 cut(s)	319, 623, 701
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	3 cut(s)	319, 623, 701
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	557
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	454, 630, 641
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	4 cut(s)	349, 360, 580, 606
BssMI	GATC	1 cut(s)	557
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	349, 360
Bst4CI	ACNGT	3 cut(s)	333, 542, 658
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstC8I	GCNNGC	5 cut(s)	21, 78, 90, 217, 704
BstDEI	CTNAG	3 cut(s)	259, 478, 708
BstDSI	CCRYGG	1 cut(s)	349
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	2 cut(s)	370, 718
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 576
BstNSI	RCATGY	3 cut(s)	80, 630, 676
BstSCI	CCNGG	2 cut(s)	579, 605
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	10, 104, 500
BstXI	CCANNNNNNTGG	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	370, 718
Cac8I	GCNNGC	5 cut(s)	21, 78, 90, 217, 704
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	332, 731
Csp6I	GTAC	3 cut(s)	120, 739, 748
CviAII	CATG	7 cut(s)	77, 204, 350, 518, 523, 627, 673
CviQI	GTAC	3 cut(s)	120, 739, 748
DdeI	CTNAG	3 cut(s)	259, 478, 708
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
DraI	TTTAAA	2 cut(s)	393, 663
Eco130I	CCWWGG	2 cut(s)	349, 360
Eco32I	GATATC	2 cut(s)	277, 373
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRV	GATATC	2 cut(s)	277, 373
EcoT14I	CCWWGG	2 cut(s)	349, 360
ErhI	CCWWGG	2 cut(s)	349, 360
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	7 cut(s)	80, 207, 353, 521, 526, 630, 676
FaqI	GGGAC	3 cut(s)	319, 623, 701
FatI	CATG	7 cut(s)	76, 203, 349, 517, 522, 626, 672
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	24, 93, 514
FokI	GGATG	2 cut(s)	377, 725
Fsp4HI	GCNGC	3 cut(s)	24, 93, 514
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	3 cut(s)	24, 93, 514
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	580, 606
HgaI	GACGC	2 cut(s)	332, 731
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	7 cut(s)	80, 207, 353, 521, 526, 630, 676
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	44, 226, 356, 563
HpaII	CCGG	2 cut(s)	580, 606
HphI	GGTGA	2 cut(s)	365, 367
Hpy166II	GTNNAC	4 cut(s)	145, 209, 256, 646
Hpy188I	TCNGA	4 cut(s)	262, 439, 562, 624
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	4 cut(s)	145, 209, 256, 646
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	333, 542, 658
HpyCH4IV	ACGT	2 cut(s)	122, 441
HpyCH4V	TGCA	4 cut(s)	215, 256, 489, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 576
HpyF3I	CTNAG	3 cut(s)	259, 478, 708
HpySE526I	ACGT	2 cut(s)	122, 441
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	7 cut(s)	80, 207, 353, 521, 526, 630, 676
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	8 cut(s)	74, 182, 319, 532, 593, 619, 716, 732
Lsp1109I	GCAGC	3 cut(s)	10, 104, 500
LweI	GCATC	3 cut(s)	480, 537, 628
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	122, 441
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	1 cut(s)	559
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	1 cut(s)	557
MboII	GAAGA	3 cut(s)	119, 303, 398
MfeI	CAATTG	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	137, 162, 311, 532
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	6 cut(s)	43, 55, 261, 376, 412, 661
MseI	TTAA	4 cut(s)	392, 662, 696, 752
MslI	CAYNNNNRTG	2 cut(s)	202, 494
MspI	CCGG	2 cut(s)	580, 606
MspR9I	CCNGG	2 cut(s)	581, 607
MunI	CAATTG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	534, 576
NciI	CCSGG	2 cut(s)	581, 607
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	557
NlaIII	CATG	7 cut(s)	80, 207, 353, 521, 526, 630, 676
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	542
NspI	RCATGY	3 cut(s)	80, 630, 676
PaeI	GCATGC	1 cut(s)	80
PciI	ACATGT	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	44, 226, 356
PkrI	GCNGC	3 cut(s)	25, 94, 515
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	30
RsaI	GTAC	3 cut(s)	121, 740, 749
RsaNI	GTAC	3 cut(s)	120, 739, 748
RseI	CAYNNNNRTG	2 cut(s)	202, 494
SaqAI	TTAA	4 cut(s)	392, 662, 696, 752
SatI	GCNGC	3 cut(s)	24, 93, 514
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	1 cut(s)	30
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	581, 607
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	9 cut(s)	21, 57, 97, 125, 221, 255, 301, 435, 444
SfaNI	GCATC	3 cut(s)	480, 537, 628
SmiMI	CAYNNNNRTG	2 cut(s)	202, 494
SmlI	CTYRAG	2 cut(s)	50, 59
SmoI	CTYRAG	2 cut(s)	50, 59
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	4 cut(s)	137, 162, 311, 532
SsiI	CCGC	3 cut(s)	454, 630, 641
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	579, 605
StyI	CCWWGG	2 cut(s)	349, 360
TaaI	ACNGT	3 cut(s)	333, 542, 658
TaiI	ACGT	2 cut(s)	125, 444
TaqI	TCGA	1 cut(s)	444
TasI	AATT	4 cut(s)	137, 162, 311, 532
TatI	WGTACW	2 cut(s)	738, 747
TfiI	GAWTC	3 cut(s)	44, 226, 356
Tru1I	TTAA	4 cut(s)	392, 662, 696, 752
Tru9I	TTAA	4 cut(s)	392, 662, 696, 752
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	3 cut(s)	23, 92, 513
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	27, 149
VneI	GTGCAC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	707
XceI	RCATGY	3 cut(s)	80, 630, 676
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.