Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

9184616 .. 9185111

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG117700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGAAGTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCAAATTGCTGCCATGCCATGTGTATCAATTGCTACCGTGACTGGAACACAAGGTCAGTGTCTTGCCCATTTTGCCGGGGAAGTATAAAGAGAGTGGATTCCGGGGACTTGTGGGTTCTGACATGTGGAAGTGATGTGGTTGACACTCAAACTGTTTTGAAGGAGGACATGTTGCGGTTTTATCTTTTTATTAACAGTCTGCCTAAGGATGTCCCCGATGCTCTGTTTGTAATGTACTATGAGTACTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

120

Amino Acids

13.98

Weight (kDa)

5.4

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	21 - 68	2.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	23 - 62	1.5e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	344, 353
AflIII	ACRYGT	2 cut(s)	230, 276
AgsI	TTSAA	2 cut(s)	50, 268
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	185, 211
AxyI	CCTNAGG	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	185, 211
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	185, 211
BmrFI	CCNGG	2 cut(s)	185, 211
BmsI	GCATC	1 cut(s)	316
BpuMI	CCSGG	2 cut(s)	185, 211
BsaJI	CCNNGG	2 cut(s)	184, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse1I	ACTGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	184, 210
BseGI	GGATG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	184, 210
BslFI	GGGAC	2 cut(s)	227, 305
BsmFI	GGGAC	2 cut(s)	227, 305
BspACI	CCGC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	184, 210
Bst4CI	ACNGT	3 cut(s)	146, 262, 305
BstDEI	CTNAG	2 cut(s)	82, 312
BstF5I	GGATG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNSI	RCATGY	2 cut(s)	234, 280
BstSCI	CCNGG	2 cut(s)	183, 209
BstV1I	GCAGC	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	343, 352
CviAII	CATG	4 cut(s)	122, 127, 231, 277
CviJI	RGCY	2 cut(s)	37, 88
CviKI_1	RGCY	2 cut(s)	37, 88
CviQI	GTAC	2 cut(s)	343, 352
DdeI	CTNAG	2 cut(s)	82, 312
Eco81I	CCTNAGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	125, 130, 234, 280
FaiI	YATR	8 cut(s)	21, 123, 128, 194, 232, 278, 348, 361
FaqI	GGGAC	2 cut(s)	227, 305
FatI	CATG	4 cut(s)	121, 126, 230, 276
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
HapII	CCGG	2 cut(s)	184, 210
Hin1II	CATG	4 cut(s)	125, 130, 234, 280
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	184, 210
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	43, 228
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	146, 262, 305
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	82, 312
Hsp92II	CATG	4 cut(s)	125, 130, 234, 280
LpnPI	CCDG	3 cut(s)	136, 197, 223
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	146
MfeI	CAATTG	1 cut(s)	136
MluCI	AATT	2 cut(s)	112, 136
MnlI	CCTC	2 cut(s)	16, 265
MseI	TTAA	2 cut(s)	300, 356
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	2 cut(s)	184, 210
MspR9I	CCNGG	2 cut(s)	185, 211
MunI	CAATTG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	185, 211
NlaIII	CATG	4 cut(s)	125, 130, 234, 280
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	2 cut(s)	234, 280
PciI	ACATGT	2 cut(s)	230, 276
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	119
PscI	ACATGT	2 cut(s)	230, 276
RsaI	GTAC	2 cut(s)	344, 353
RsaNI	GTAC	2 cut(s)	343, 352
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	300, 356
SatI	GCNGC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	185, 211
SetI	ASST	2 cut(s)	39, 164
SfaNI	GCATC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	112, 136
SsiI	CCGC	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	183, 209
TaaI	ACNGT	3 cut(s)	146, 262, 305
TasI	AATT	2 cut(s)	112, 136
TatI	WGTACW	2 cut(s)	342, 351
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	300, 356
Tru9I	TTAA	2 cut(s)	300, 356
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	1 cut(s)	171
XceI	RCATGY	2 cut(s)	234, 280
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.