Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

18921064 .. 18921863

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTTACTTGTACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGGAAGAAAAGCTACTACCAGTCAATTCTCAAAGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGACTTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCAAATTGCTGCCATGCCATGTTTTATTTTGCCCATTTTGTAAACTGTTTAGGATGTGATTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

109

Amino Acids

12.91

Weight (kDa)

5.89

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	13
AluBI	AGCT	2 cut(s)	57, 190
AluI	AGCT	2 cut(s)	57, 190
Alw26I	GTCTC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AsuHPI	GGTGA	2 cut(s)	122, 124
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	15, 148
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	106, 117
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	106, 117
BseGI	GGATG	2 cut(s)	127, 320
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	106, 117
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	106, 117
Bst4CI	ACNGT	2 cut(s)	90, 308
BstDEI	CTNAG	2 cut(s)	17, 235
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	127, 320
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	127, 320
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	107, 275, 280
CviJI	RGCY	3 cut(s)	57, 190, 241
CviKI_1	RGCY	3 cut(s)	57, 190, 241
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	17, 235
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	106, 117
Eco32I	GATATC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	106, 117
ErhI	CCWWGG	2 cut(s)	106, 117
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	110, 278, 283
FaiI	YATR	6 cut(s)	46, 83, 108, 174, 276, 281
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	3 cut(s)	106, 274, 279
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	271
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	110, 278, 283
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	2 cut(s)	122, 124
Hpy166II	GTNNAC	3 cut(s)	6, 202, 304
Hpy188I	TCNGA	2 cut(s)	20, 196
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	3 cut(s)	6, 202, 304
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	90, 308
HpyCH4V	TGCA	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	17, 235
Hsp92II	CATG	3 cut(s)	110, 278, 283
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	61, 155
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	2 cut(s)	69, 265
MnlI	CCTC	3 cut(s)	19, 133, 169
MslI	CAYNNNNRTG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	110, 278, 283
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	145
SetI	ASST	2 cut(s)	59, 192
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	69, 265
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	106, 117
TaaI	ACNGT	2 cut(s)	90, 308
TasI	AATT	2 cut(s)	69, 265
TfiI	GAWTC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.