pycom14g13700

RING-H2 finger protein ATL47-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0008136
Physical Location & Seq
Forward (+)
16551602 .. 16553751
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13700.1

Sequence Viewer

Length: 762 bp
ATGTTGGATTACTATGAGCAGCTTGCTTCCAGGCCTTCTTACCATGATTCTCTCAAGGTTCTTGAGGCAGATATTCAGCATGCCAATATGCTGGCAGCTTCCATCCCCCGAAGCAAGGGTGGTACGGTTCTTCAAATGAAATTGGTTTACAGTGATTTGGCACACATTTTCCTGTTTTTGCTTCAGTGGATTGATTGCTCGTCTTCGTGTTTATTTTCAAGTTACTTAAATCTTTTCCACATAATTGTATATAAGGTACGCTCAGATGGGAGATCAAATATCTCTTCATGTGGAAGGAAAGCTACCATCAGCGAATTTTACAATGTTATATTGCCGTCCCTTCAGTGTCTCCATGGTGATTCATTGGAGATGCATATCACCCAAGAGGAAGCTCTAGAGATGGCTGCGAGGAAACCATATGGGGATAAGATAAAGCTTTCGGATGTGGACTTGGAGAGAGAAGATGAATGTGGCATCTGCTTAGTAACTTGCACCAAAATGGTTTTGCCAAACTGTTGCCATGCAATGTGCATTAACTGCTACCACGACTGGAACACAAGATCAGAATCTTGCCCATTTTGCCGGGGAAGTATAAAAAGAGTGAACTCAGGGGACTTGTGGGTTCTGACCTGCGGTAGTGATGTGGTTGACACTCAAACCGTGTTGAAGGAAGATATGTTGCGGTTCTATCTTTTTATCAACAGACTGCCCAAAGATCTCCCGGATGCGTTGTTCTTAACGTATTATGAGTACTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3 zf-RING_2

Protein Analysis

254

Amino Acids

28.93

Weight (kDa)

5.59

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 154 - 201 1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 638
AciI CCGC 2 cut(s) 633, 682
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 2 cut(s) 167, 326
AfaI GTAC 3 cut(s) 124, 258, 752
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 3 cut(s) 134, 219, 667
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 716, 748
AluBI AGCT 5 cut(s) 22, 98, 302, 392, 436
AluI AGCT 5 cut(s) 22, 98, 302, 392, 436
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 19, 95, 404
ApoI RAATTY 1 cut(s) 314
AsuC2I CCSGG 2 cut(s) 584, 722
AsuHPI GGTGA 2 cut(s) 368, 370
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 31, 107, 391
BccI CCATC 4 cut(s) 110, 260, 314, 394
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 2 cut(s) 584, 722
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 638
BglII AGATCT 1 cut(s) 715
BisI GCNGC 3 cut(s) 20, 96, 405
BlsI GCNGC 3 cut(s) 21, 97, 406
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 3 cut(s) 31, 584, 722
BmrFI CCNGG 3 cut(s) 31, 584, 722
BmsI GCATC 3 cut(s) 360, 483, 715
BpiI GAAGAC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 38, 83
BpuMI CCSGG 2 cut(s) 584, 722
BsaBI GATNNNNATC 2 cut(s) 374, 565
BsaJI CCNNGG 2 cut(s) 352, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 2 cut(s) 374, 565
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 352, 583
BseGI GGATG 3 cut(s) 102, 448, 730
BseJI GATNNNNATC 2 cut(s) 374, 565
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 276, 621
BseNI ACTGG 1 cut(s) 554
BseXI GCAGC 3 cut(s) 31, 107, 391
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 583, 722
BslFI GGGAC 2 cut(s) 322, 626
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 322, 626
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 3 cut(s) 272, 560, 715
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 2 cut(s) 633, 682
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 275, 620
BspMI ACCTGC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 2 cut(s) 352, 583
BssMI GATC 3 cut(s) 272, 560, 715
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 127, 152, 515, 661
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 537
BstC8I GCNNGC 3 cut(s) 24, 81, 93
BstDEI CTNAG 3 cut(s) 262, 481, 607
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 102, 448, 730
BstKTI GATC 3 cut(s) 275, 563, 718
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 272, 560, 715
BstMWI GCNNNNNNNGC 2 cut(s) 537, 579
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 29, 582, 720
BstV1I GCAGC 3 cut(s) 31, 107, 391
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 715
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 715
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 3 cut(s) 102, 448, 730
BtsIMutI CAGTG 3 cut(s) 157, 191, 350
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 3 cut(s) 24, 81, 93
Csp6I GTAC 3 cut(s) 123, 257, 751
CviAII CATG 5 cut(s) 44, 80, 288, 353, 521
CviJI RGCY 7 cut(s) 22, 34, 98, 302, 392, 404, 436
CviKI_1 RGCY 7 cut(s) 22, 34, 98, 302, 392, 404, 436
CviQI GTAC 3 cut(s) 123, 257, 751
DdeI CTNAG 3 cut(s) 262, 481, 607
DpnI GATC 3 cut(s) 274, 562, 717
DpnII GATC 3 cut(s) 272, 560, 715
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 167, 326
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 5 cut(s) 47, 83, 291, 356, 524
FaqI GGGAC 2 cut(s) 322, 626
FatI CATG 5 cut(s) 43, 79, 287, 352, 520
FauNDI CATATG 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 20, 96, 405
FokI GGATG 3 cut(s) 89, 455, 737
Fsp4HI GCNGC 3 cut(s) 20, 96, 405
FspBI CTAG 1 cut(s) 395
GluI GCNGC 3 cut(s) 20, 96, 405
HaeIII GGCC 1 cut(s) 34
HapII CCGG 2 cut(s) 583, 722
Hin1II CATG 5 cut(s) 47, 83, 291, 356, 524
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 3 cut(s) 47, 359, 566
HpaII CCGG 2 cut(s) 583, 722
HphI GGTGA 2 cut(s) 368, 370
Hpy166II GTNNAC 4 cut(s) 148, 448, 604, 649
Hpy188I TCNGA 4 cut(s) 265, 442, 565, 627
Hpy188III TCNNGA 2 cut(s) 62, 395
Hpy8I GTNNAC 4 cut(s) 148, 448, 604, 649
HpyAV CCTTC 4 cut(s) 45, 288, 350, 661
HpyCH4III ACNGT 4 cut(s) 127, 152, 515, 661
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 4 cut(s) 373, 492, 524, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 537, 579
HpyF3I CTNAG 3 cut(s) 262, 481, 607
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 5 cut(s) 47, 83, 291, 356, 524
Kzo9I GATC 3 cut(s) 272, 560, 715
LpnPI CCDG 9 cut(s) 16, 43, 77, 185, 535, 594, 596, 643, 735
Lsp1109I GCAGC 3 cut(s) 31, 107, 391
LweI GCATC 3 cut(s) 360, 483, 715
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 2 cut(s) 221, 484
MalI GATC 3 cut(s) 274, 562, 717
MboI GATC 3 cut(s) 272, 560, 715
MboII GAAGA 5 cut(s) 122, 195, 276, 473, 683
MflI RGATCY 1 cut(s) 715
MluCI AATT 4 cut(s) 140, 243, 314, 756
MnlI CCTC 3 cut(s) 58, 379, 402
Mph1103I ATGCAT 1 cut(s) 375
MseI TTAA 4 cut(s) 227, 534, 737, 755
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 2 cut(s) 583, 722
MspR9I CCNGG 3 cut(s) 31, 584, 722
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 537, 579
NciI CCSGG 2 cut(s) 584, 722
NcoI CCATGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 418
NdeII GATC 3 cut(s) 272, 560, 715
NlaIII CATG 5 cut(s) 47, 83, 291, 356, 524
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PceI AGGCCT 1 cut(s) 34
PfeI GAWTC 3 cut(s) 47, 359, 566
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 3 cut(s) 21, 97, 406
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 3 cut(s) 124, 258, 752
RsaNI GTAC 3 cut(s) 123, 257, 751
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 4 cut(s) 227, 534, 737, 755
SatI GCNGC 3 cut(s) 20, 96, 405
Sau3AI GATC 3 cut(s) 272, 560, 715
ScaI AGTACT 1 cut(s) 752
ScrFI CCNGG 3 cut(s) 31, 584, 722
SetI ASST 9 cut(s) 24, 60, 100, 258, 304, 394, 438, 632, 743
SfaNI GCATC 3 cut(s) 360, 483, 715
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 53, 62
SmoI CTYRAG 2 cut(s) 53, 62
SphI GCATGC 1 cut(s) 83
Sse9I AATT 4 cut(s) 140, 243, 314, 756
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 2 cut(s) 633, 682
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 3 cut(s) 29, 582, 720
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 4 cut(s) 127, 152, 515, 661
TaiI ACGT 1 cut(s) 743
TasI AATT 4 cut(s) 140, 243, 314, 756
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 3 cut(s) 47, 359, 566
Tru1I TTAA 4 cut(s) 227, 534, 737, 755
Tru9I TTAA 4 cut(s) 227, 534, 737, 755
TscAI CASTG 3 cut(s) 157, 191, 350
TseI GCWGC 3 cut(s) 19, 95, 404
TspDTI ATGAA 4 cut(s) 152, 276, 351, 480
TspRI CASTG 3 cut(s) 157, 191, 350
XapI RAATTY 1 cut(s) 314
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 752
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.