Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

25823261 .. 25825916

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1164300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTGGATTACTATGAGCAGCTTGCTTCCAGGCCTTCTTACCATGATTCTCTCAAGGTTCTTGAGGCAGATATTCAGCATGCCAATATGCTGGCAGCTTCCATCCCCCGAAGCAAGGGTGGTACGGTTCTTCAAATGAAATTGGTTTACAGTGACTTGGCACACATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCGTCTTCGTGTTTATTTTCAAGTTACTTAAATCTTTTCCACATAATTGTATATAAGGTACGCTCAGATGGGAGATCAAATATCTCTTCATGTGGAAGGAAAGCTACCATCAGCGAATTTTACAATGTTATATTGCCGTCCCTTCAGTGTCTCCACGGTGATTCATTGGAGATGGATACCACCCAAGAGGAAGCTCTAGAGATGGCTGCGAGGAAACCATATGAGGATAAGATAAAGCTTTCAGATGTGGACTTGGAGAGAGAAGCTGAATGTGGCATCTGCTTAGTACCTTGCACCAAAATGGTTTTGCCAAACTGCTGCCATGCAATGTGCATTAACTGCTACCACGACTGGAACATAAGATCGGAATCTTGCCCGTTTTGCCGGGGAAGTCTAAAAAGAGTGAACTCAGGGGACTTGTGGGTTCTGACCTGCGGTAGCGATGTGGTTGACACTCAAACCGTGTTGAAGGAAGATATGTTGCGGTTCTATCTTTTTATCAACAGACTGCCCAAAGATCTCCCGGATGCGTTGTTCTTAATGTATTATGAGTACTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

254

Amino Acids

28.97

Weight (kDa)

5.36

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
AciI	CCGC	2 cut(s)	633, 682
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	4 cut(s)	124, 258, 486, 752
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	134, 185, 219, 667
AjnI	CCWGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	6 cut(s)	22, 98, 302, 392, 436, 464
AluI	AGCT	6 cut(s)	22, 98, 302, 392, 436, 464
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	19, 95, 404, 516
ApoI	RAATTY	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	584, 722
AsuHPI	GGTGA	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	31, 107, 391, 503
BccI	CCATC	5 cut(s)	110, 260, 314, 364, 394
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	584, 722
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	4 cut(s)	20, 96, 405, 517
BlsI	GCNGC	4 cut(s)	21, 97, 406, 518
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	3 cut(s)	31, 584, 722
BmrFI	CCNGG	3 cut(s)	31, 584, 722
BmsI	GCATC	2 cut(s)	483, 715
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	38, 83
BpuMI	CCSGG	2 cut(s)	584, 722
BsaBI	GATNNNNATC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	352, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	352, 583
BseGI	GGATG	2 cut(s)	102, 730
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	276, 621
BseNI	ACTGG	1 cut(s)	554
BseXI	GCAGC	4 cut(s)	31, 107, 391, 503
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	583, 722
BslFI	GGGAC	2 cut(s)	322, 626
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	322, 626
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	272, 560, 715
BspACI	CCGC	2 cut(s)	633, 682
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	275, 620
BspMI	ACCTGC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	352, 583
BssMI	GATC	3 cut(s)	272, 560, 715
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	4 cut(s)	127, 152, 356, 661
Bst6I	CTCTTC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	3 cut(s)	24, 81, 93
BstDEI	CTNAG	3 cut(s)	262, 481, 607
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	102, 730
BstKTI	GATC	3 cut(s)	275, 563, 718
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	272, 560, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	537, 579
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	29, 582, 720
BstV1I	GCAGC	4 cut(s)	31, 107, 391, 503
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	102, 730
BtsIMutI	CAGTG	2 cut(s)	157, 350
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	24, 81, 93
Csp6I	GTAC	4 cut(s)	123, 257, 485, 751
CviAII	CATG	4 cut(s)	44, 80, 288, 521
CviJI	RGCY	8 cut(s)	22, 34, 98, 302, 392, 404, 436, 464
CviKI_1	RGCY	8 cut(s)	22, 34, 98, 302, 392, 404, 436, 464
CviQI	GTAC	4 cut(s)	123, 257, 485, 751
DdeI	CTNAG	3 cut(s)	262, 481, 607
DpnI	GATC	3 cut(s)	274, 562, 717
DpnII	GATC	3 cut(s)	272, 560, 715
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	4 cut(s)	47, 83, 291, 524
FaqI	GGGAC	2 cut(s)	322, 626
FatI	CATG	4 cut(s)	43, 79, 287, 520
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	20, 96, 405, 517
FokI	GGATG	2 cut(s)	89, 737
Fsp4HI	GCNGC	4 cut(s)	20, 96, 405, 517
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	4 cut(s)	20, 96, 405, 517
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	2 cut(s)	583, 722
Hin1II	CATG	4 cut(s)	47, 83, 291, 524
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	47, 359, 566
HpaII	CCGG	2 cut(s)	583, 722
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	4 cut(s)	148, 448, 604, 649
Hpy188I	TCNGA	4 cut(s)	265, 442, 565, 627
Hpy188III	TCNNGA	2 cut(s)	62, 395
Hpy8I	GTNNAC	4 cut(s)	148, 448, 604, 649
HpyAV	CCTTC	4 cut(s)	45, 288, 350, 661
HpyCH4III	ACNGT	4 cut(s)	127, 152, 356, 661
HpyCH4V	TGCA	3 cut(s)	492, 524, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	537, 579
HpyF3I	CTNAG	3 cut(s)	262, 481, 607
Hsp92II	CATG	4 cut(s)	47, 83, 291, 524
Kzo9I	GATC	3 cut(s)	272, 560, 715
LpnPI	CCDG	9 cut(s)	16, 43, 77, 185, 535, 594, 596, 643, 735
Lsp1109I	GCAGC	4 cut(s)	31, 107, 391, 503
LweI	GCATC	2 cut(s)	483, 715
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	152, 221
MalI	GATC	3 cut(s)	274, 562, 717
MboI	GATC	3 cut(s)	272, 560, 715
MboII	GAAGA	4 cut(s)	122, 195, 276, 683
MflI	RGATCY	1 cut(s)	715
MluCI	AATT	4 cut(s)	140, 243, 314, 756
MnlI	CCTC	4 cut(s)	58, 379, 402, 415
MseI	TTAA	4 cut(s)	227, 534, 737, 755
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	2 cut(s)	583, 722
MspR9I	CCNGG	3 cut(s)	31, 584, 722
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	537, 579
NciI	CCSGG	2 cut(s)	584, 722
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	272, 560, 715
NlaIII	CATG	4 cut(s)	47, 83, 291, 524
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	47, 359, 566
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	4 cut(s)	21, 97, 406, 518
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	4 cut(s)	124, 258, 486, 752
RsaNI	GTAC	4 cut(s)	123, 257, 485, 751
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	4 cut(s)	227, 534, 737, 755
SatI	GCNGC	4 cut(s)	20, 96, 405, 517
Sau3AI	GATC	3 cut(s)	272, 560, 715
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	3 cut(s)	31, 584, 722
SfaNI	GCATC	2 cut(s)	483, 715
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	53, 62
SmoI	CTYRAG	2 cut(s)	53, 62
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	4 cut(s)	140, 243, 314, 756
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	633, 682
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	29, 582, 720
TaaI	ACNGT	4 cut(s)	127, 152, 356, 661
TasI	AATT	4 cut(s)	140, 243, 314, 756
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	47, 359, 566
Tru1I	TTAA	4 cut(s)	227, 534, 737, 755
Tru9I	TTAA	4 cut(s)	227, 534, 737, 755
TscAI	CASTG	2 cut(s)	157, 350
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	19, 95, 404, 516
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	152, 276, 351
TspRI	CASTG	2 cut(s)	157, 350
XapI	RAATTY	1 cut(s)	314
XbaI	TCTAGA	1 cut(s)	394
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.