Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

10222234 .. 10227279

Gene Structure 5046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAATTGGTTTACAATCAGTTGGCACCAATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCGTCTTCATGTTTACTTGCAAGTTACTTGAATATTTTTGACATAGTTGTATATAAGGTGCGCTCAGACGGGAAGGCAAATATCTCTTCTTATGGAAGAAAAGCTACTGCCAGTCAATTCTACAATGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGAAGTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCAAATTGCTGCCATGCCATGTGTATCAATTGCTACCGTGACTGGAACACAAGGTCAGTGTCTTGCCCATTTTGCCGGGGAAGTATAAAGAGAGTGGATTCCGGGGACTTGTGGGTTCTGACATGTGGAAGTGATGTGGTTGACACTCAAACTGTTTTGAAGGAGGACATGTTGCGGTTTTATCTTTTTATTAACAGTCTGCCTAAGGATGTCCCCGATGCTCTGTTTGTAATGTACTATGAGTACTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

208

Amino Acids

23.99

Weight (kDa)

5.13

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	109 - 156	8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	111 - 150	4.1e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	608, 617
AflIII	ACRYGT	2 cut(s)	494, 540
AgsI	TTSAA	4 cut(s)	50, 94, 314, 532
AluBI	AGCT	2 cut(s)	167, 301
AluI	AGCT	2 cut(s)	167, 301
Alw26I	GTCTC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	449, 475
AsuHPI	GGTGA	2 cut(s)	233, 235
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	449, 475
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	2 cut(s)	449, 475
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	449, 475
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	449, 475
BsaJI	CCNNGG	4 cut(s)	217, 228, 448, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bse1I	ACTGG	2 cut(s)	174, 419
Bse21I	CCTNAGG	1 cut(s)	576
BseDI	CCNNGG	4 cut(s)	217, 228, 448, 474
BseGI	GGATG	2 cut(s)	238, 586
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	174, 419
BseXI	GCAGC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	448, 474
BslFI	GGGAC	3 cut(s)	187, 491, 569
BsmAI	GTCTC	1 cut(s)	218
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	3 cut(s)	187, 491, 569
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	174, 419
BssECI	CCNNGG	4 cut(s)	217, 228, 448, 474
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	217, 228
Bst4CI	ACNGT	4 cut(s)	201, 410, 526, 569
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	127, 346, 576
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	238, 586
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	498, 544
BstSCI	CCNGG	2 cut(s)	447, 473
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	238, 586
BtsIMutI	CAGTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	126
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	607, 616
CviAII	CATG	6 cut(s)	72, 218, 386, 391, 495, 541
CviJI	RGCY	3 cut(s)	167, 301, 352
CviKI_1	RGCY	3 cut(s)	167, 301, 352
CviQI	GTAC	2 cut(s)	607, 616
DdeI	CTNAG	3 cut(s)	127, 346, 576
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	217, 228
Eco32I	GATATC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	217, 228
ErhI	CCWWGG	2 cut(s)	217, 228
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	6 cut(s)	75, 221, 389, 394, 498, 544
FaqI	GGGAC	3 cut(s)	187, 491, 569
FatI	CATG	6 cut(s)	71, 217, 385, 390, 494, 540
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	245, 593
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	382
HapII	CCGG	2 cut(s)	448, 474
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	75, 221, 389, 394, 498, 544
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	224, 470
HpaII	CCGG	2 cut(s)	448, 474
HphI	GGTGA	2 cut(s)	233, 235
Hpy166II	GTNNAC	3 cut(s)	13, 77, 514
Hpy188I	TCNGA	3 cut(s)	130, 307, 492
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	13, 77, 514
HpyAV	CCTTC	3 cut(s)	130, 215, 526
HpyCH4III	ACNGT	4 cut(s)	201, 410, 526, 569
HpyCH4V	TGCA	2 cut(s)	83, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	3 cut(s)	127, 346, 576
Hsp92II	CATG	6 cut(s)	75, 221, 389, 394, 498, 544
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	5 cut(s)	50, 187, 400, 461, 487
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	86, 410
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	4 cut(s)	60, 141, 171, 266
MfeI	CAATTG	1 cut(s)	400
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	5 cut(s)	5, 30, 179, 376, 400
MnlI	CCTC	3 cut(s)	244, 280, 529
MseI	TTAA	2 cut(s)	564, 620
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	448, 474
MspR9I	CCNGG	2 cut(s)	449, 475
MunI	CAATTG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	2 cut(s)	449, 475
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	6 cut(s)	75, 221, 389, 394, 498, 544
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	2 cut(s)	498, 544
PciI	ACATGT	2 cut(s)	494, 540
PfeI	GAWTC	2 cut(s)	224, 470
PkrI	GCNGC	1 cut(s)	383
PscI	ACATGT	2 cut(s)	494, 540
PspN4I	GGNNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	608, 617
RsaNI	GTAC	2 cut(s)	607, 616
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	564, 620
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	449, 475
SetI	ASST	4 cut(s)	123, 169, 303, 428
SfaNI	GCATC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	5 cut(s)	5, 30, 179, 376, 400
SsiI	CCGC	1 cut(s)	547
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	447, 473
StyI	CCWWGG	2 cut(s)	217, 228
TaaI	ACNGT	4 cut(s)	201, 410, 526, 569
TasI	AATT	5 cut(s)	5, 30, 179, 376, 400
TatI	WGTACW	2 cut(s)	606, 615
TfiI	GAWTC	2 cut(s)	224, 470
Tru1I	TTAA	2 cut(s)	564, 620
Tru9I	TTAA	2 cut(s)	564, 620
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	17, 60
TspRI	CASTG	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	498, 544
XspI	CTAG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.