Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

19809009 .. 19828327

Gene Structure 19319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG177300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAGCGCGTAATTATGGGAAACAGAAAGGGCAAAAGAGACAATCCCGGATGAACAGTATAACAGTGGATCCGTCTTTAGATGTACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGGAAGAAAAGCTACTACCAGTCAATTCTACAAAGTTATATTATCGTCCCTTCAACGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGCTAAGATAAAGCTTTTTGATGTTGACTTGGAGAGAGAAAAGGAATGTGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGTCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGACAGCCTTTTGCCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

137

Amino Acids

15.66

Weight (kDa)

5.25

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	10
AclWI	GGATC	2 cut(s)	65, 78
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	131, 265, 336
AluI	AGCT	3 cut(s)	131, 265, 336
Alw26I	GTCTC	2 cut(s)	34, 182
AlwI	GGATC	2 cut(s)	65, 78
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	197, 199
AvaII	GGWCC	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	115, 147
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	89, 223, 350
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	1 cut(s)	407
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	34, 182
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	49, 407
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	72, 375
BmrFI	CCNGG	2 cut(s)	49, 407
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	181, 192
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	181, 192
BseGI	GGATG	4 cut(s)	57, 202, 349, 361
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	34, 182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	70, 220, 328
Bsp19I	CCATGG	1 cut(s)	181
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	72, 375
BspPI	GGATC	2 cut(s)	65, 78
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	181, 192
BssMI	GATC	3 cut(s)	70, 220, 328
BssT1I	CCWWGG	2 cut(s)	181, 192
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	59, 67, 307
BstDEI	CTNAG	2 cut(s)	91, 255
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	4 cut(s)	57, 202, 349, 361
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	73, 223, 331
BstMAI	GTCTC	2 cut(s)	34, 182
BstMBI	GATC	3 cut(s)	70, 220, 328
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	47, 405
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	70, 220
BstYI	RGATCY	2 cut(s)	70, 220
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	4 cut(s)	57, 202, 349, 361
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	182, 411
CviJI	RGCY	8 cut(s)	131, 254, 265, 319, 336, 367, 384, 398
CviKI_1	RGCY	8 cut(s)	131, 254, 265, 319, 336, 367, 384, 398
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	91, 255
DpnI	GATC	3 cut(s)	72, 222, 330
DpnII	GATC	3 cut(s)	70, 220, 328
Eco130I	CCWWGG	2 cut(s)	181, 192
Eco147I	AGGCCT	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	181, 192
ErhI	CCWWGG	2 cut(s)	181, 192
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	185, 414
FaiI	YATR	7 cut(s)	18, 62, 120, 158, 183, 249, 412
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	181, 410
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	4 cut(s)	64, 209, 356, 368
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	185, 414
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	263, 334
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	197, 199
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	94, 325
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	3 cut(s)	59, 67, 307
HpyCH4IV	ACGT	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	91, 255
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	185, 414
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	70, 220, 328
LpnPI	CCDG	3 cut(s)	62, 151, 392
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	175
MalI	GATC	3 cut(s)	72, 222, 330
MboI	GATC	3 cut(s)	70, 220, 328
MboII	GAAGA	3 cut(s)	135, 230, 338
MflI	RGATCY	2 cut(s)	70, 220
MluCI	AATT	2 cut(s)	13, 143
MnlI	CCTC	5 cut(s)	93, 208, 244, 346, 387
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	2 cut(s)	49, 407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	10
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	70, 220, 328
NlaIII	CATG	2 cut(s)	185, 414
NlaIV	GGNNCC	2 cut(s)	72, 375
PceI	AGGCCT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	72, 375
PspPI	GGNCC	1 cut(s)	374
PspPPI	RGGWCCY	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	70, 220
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	70, 220, 328
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	49, 407
SetI	ASST	4 cut(s)	133, 178, 267, 338
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	13, 143
SseBI	AGGCCT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	47, 405
StyI	CCWWGG	2 cut(s)	181, 192
TaaI	ACNGT	3 cut(s)	59, 67, 307
TaiI	ACGT	1 cut(s)	178
TasI	AATT	2 cut(s)	13, 143
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	374
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.