Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Reverse (-)

59577141 .. 59579363

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATTATTATGAACAGCTTGCTGCTAGGCCCTCTTATCAAGATTCTCTCAAGGTTCTGGAGGCTGATGTTCAGCATGCCAATATGCTGGCAGCTTCCATACCAAGAAGCAAGGGTGGTACGTTTCTTCAAATGAAATTGGTTTACAATCAGTTGGCACCAATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCGTCTTCATGTTTACTTGCAAGTTACTTGAATCTTTTCGACGTAGTTGTATATAAGGTGTGCTCAGACAGGAGGGCAAATATCTCTTCTTATGGAAGAAAAGCTACTACCAGTCAATTCTACAATGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTCGAGATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGAAGTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCATGCACCAAAATGGTTTTACCAAATTGCTGCCATGCCATGTGTATCAATTGCTACCGTGACTGGAACACAAGGTCAGTGTCTTGCCCATTTTGCCGGGGAAGTATAAAGAGAGTGGATTCCGGGGACTTGTGGGTTCTGACATGCGGAAGTGATGTGGTTGACACTCAAACTGTTTTGAAGGAGGACATGTTGCGGTTTTATCTTTTTATTAACAGTCTGCCTAAGGATGTCCCTGATGCTCTGTTCGTAATGTACTATGAGTACTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

253

Amino Acids

28.96

Weight (kDa)

5.18

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	153 - 200	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	155 - 194	5.6e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	630, 679
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	121, 740, 749
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	131, 182, 226, 446, 664
AluBI	AGCT	4 cut(s)	19, 95, 299, 433
AluI	AGCT	4 cut(s)	19, 95, 299, 433
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	23, 92, 513
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	2 cut(s)	581, 607
AsuHPI	GGTGA	2 cut(s)	365, 367
AvaI	CYCGRG	1 cut(s)	392
AxyI	CCTNAGG	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	10, 104, 500
BccI	CCATC	1 cut(s)	391
BcnI	CCSGG	2 cut(s)	581, 607
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	27
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	24, 93, 514
BlsI	GCNGC	3 cut(s)	25, 94, 515
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	2 cut(s)	581, 607
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	581, 607
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	581, 607
BsaJI	CCNNGG	4 cut(s)	349, 360, 580, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bse1I	ACTGG	2 cut(s)	306, 551
Bse21I	CCTNAGG	1 cut(s)	708
BseDI	CCNNGG	4 cut(s)	349, 360, 580, 606
BseGI	GGATG	2 cut(s)	370, 718
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	306, 551
BseXI	GCAGC	3 cut(s)	10, 104, 500
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	580, 606
BslFI	GGGAC	3 cut(s)	319, 623, 701
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	3 cut(s)	319, 623, 701
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	2 cut(s)	630, 679
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	306, 551
BssECI	CCNNGG	4 cut(s)	349, 360, 580, 606
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	2 cut(s)	349, 360
Bst4CI	ACNGT	4 cut(s)	333, 542, 658, 701
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	21, 78, 90
BstDEI	CTNAG	3 cut(s)	259, 478, 708
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	370, 718
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	576
BstNSI	RCATGY	3 cut(s)	80, 630, 676
BstSCI	CCNGG	2 cut(s)	579, 605
BstV1I	GCAGC	3 cut(s)	10, 104, 500
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	370, 718
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	21, 78, 90
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	120, 739, 748
CviAII	CATG	8 cut(s)	77, 204, 350, 486, 518, 523, 627, 673
CviJI	RGCY	7 cut(s)	19, 31, 65, 95, 299, 433, 484
CviKI_1	RGCY	7 cut(s)	19, 31, 65, 95, 299, 433, 484
CviQI	GTAC	3 cut(s)	120, 739, 748
DdeI	CTNAG	3 cut(s)	259, 478, 708
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	349, 360
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	349, 360
ErhI	CCWWGG	2 cut(s)	349, 360
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	8 cut(s)	80, 207, 353, 489, 521, 526, 630, 676
FaqI	GGGAC	3 cut(s)	319, 623, 701
FatI	CATG	8 cut(s)	76, 203, 349, 485, 517, 522, 626, 672
Fnu4HI	GCNGC	3 cut(s)	24, 93, 514
FokI	GGATG	2 cut(s)	377, 725
Fsp4HI	GCNGC	3 cut(s)	24, 93, 514
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	3 cut(s)	24, 93, 514
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	580, 606
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	8 cut(s)	80, 207, 353, 489, 521, 526, 630, 676
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	44, 226, 356, 602
HpaII	CCGG	2 cut(s)	580, 606
HphI	GGTGA	2 cut(s)	365, 367
Hpy166II	GTNNAC	3 cut(s)	145, 209, 646
Hpy188I	TCNGA	3 cut(s)	262, 439, 624
Hpy188III	TCNNGA	4 cut(s)	41, 59, 392, 394
Hpy8I	GTNNAC	3 cut(s)	145, 209, 646
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	347, 658
HpyCH4III	ACNGT	4 cut(s)	333, 542, 658, 701
HpyCH4IV	ACGT	2 cut(s)	122, 237
HpyCH4V	TGCA	2 cut(s)	215, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	576
HpyF3I	CTNAG	3 cut(s)	259, 478, 708
HpySE526I	ACGT	2 cut(s)	122, 237
Hsp92II	CATG	8 cut(s)	80, 207, 353, 489, 521, 526, 630, 676
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	44, 74, 182, 250, 319, 532, 593, 619, 732
Lsp1109I	GCAGC	3 cut(s)	10, 104, 500
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	122, 237
MaeIII	GTNAC	2 cut(s)	218, 542
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	119, 192, 273, 303, 398
MfeI	CAATTG	1 cut(s)	532
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	137, 162, 311, 508, 532
MnlI	CCTC	6 cut(s)	43, 55, 261, 376, 412, 661
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	696, 752
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	2 cut(s)	580, 606
MspR9I	CCNGG	2 cut(s)	581, 607
MunI	CAATTG	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	576
NciI	CCSGG	2 cut(s)	581, 607
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	8 cut(s)	80, 207, 353, 489, 521, 526, 630, 676
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	542
NspI	RCATGY	3 cut(s)	80, 630, 676
PaeI	GCATGC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	392
PciI	ACATGT	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	44, 226, 356, 602
PkrI	GCNGC	3 cut(s)	25, 94, 515
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	121, 740, 749
RsaNI	GTAC	3 cut(s)	120, 739, 748
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	696, 752
SatI	GCNGC	3 cut(s)	24, 93, 514
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	30
ScaI	AGTACT	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	581, 607
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	21, 57, 97, 125, 240, 255, 301, 435, 560
SfaNI	GCATC	1 cut(s)	712
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	50, 392
SmoI	CTYRAG	2 cut(s)	50, 392
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	5 cut(s)	137, 162, 311, 508, 532
SsiI	CCGC	2 cut(s)	630, 679
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	579, 605
StyI	CCWWGG	2 cut(s)	349, 360
TaaI	ACNGT	4 cut(s)	333, 542, 658, 701
TaiI	ACGT	2 cut(s)	125, 240
TaqI	TCGA	2 cut(s)	234, 393
TasI	AATT	5 cut(s)	137, 162, 311, 508, 532
TatI	WGTACW	2 cut(s)	738, 747
TfiI	GAWTC	4 cut(s)	44, 226, 356, 602
Tru1I	TTAA	2 cut(s)	696, 752
Tru9I	TTAA	2 cut(s)	696, 752
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	3 cut(s)	23, 92, 513
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	3 cut(s)	27, 149, 192
TspRI	CASTG	1 cut(s)	567
XceI	RCATGY	3 cut(s)	80, 630, 676
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.