Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

9474116 .. 9475366

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG122600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATGCAGGGCAGCTTCCATACCAAGAAGCAAGGGTGGAATTCACAAGCTGCTTTGTTTCTGCAGATGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGAAGTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCAAATTGCTGCCATGCCATGTGTATCAATTGCTACCGTGACTGGAACACAAGGTCAGTGTCTTGCCCATTTTGCCGGGGAAGTATAAAGAGAGTGGATTCCGGGGACTTGTGGGTTCTGACATGTGGAAGTGATGTGGTTGACACTCAAACTGTTTTGAAGGAGGACATGTTGCGGTTTTATCTTTTTATTAACAGTCTGCCTAAGGATGTCCCCGATGCTCTGTTTGTAATGTACTATGAGTACTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

168

Amino Acids

19.34

Weight (kDa)

4.65

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	69 - 116	5.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	71 - 110	2.9e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	488, 497
AflIII	ACRYGT	2 cut(s)	374, 420
AgsI	TTSAA	2 cut(s)	194, 412
AluBI	AGCT	3 cut(s)	16, 51, 181
AluI	AGCT	3 cut(s)	16, 51, 181
Alw26I	GTCTC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	13, 51, 261
ApoI	RAATTY	1 cut(s)	41
AsuC2I	CCSGG	2 cut(s)	329, 355
AsuHPI	GGTGA	2 cut(s)	113, 115
AxyI	CCTNAGG	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	25, 38, 248
BccI	CCATC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	329, 355
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	14, 52, 262
BlsI	GCNGC	3 cut(s)	15, 53, 263
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	329, 355
BmrFI	CCNGG	2 cut(s)	329, 355
BmsI	GCATC	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	329, 355
BsaJI	CCNNGG	4 cut(s)	97, 108, 328, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse1I	ACTGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	97, 108, 328, 354
BseGI	GGATG	2 cut(s)	118, 466
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	25, 38, 248
BsiSI	CCGG	2 cut(s)	328, 354
BslFI	GGGAC	3 cut(s)	67, 371, 449
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	67, 371, 449
BsmI	GAATGC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	97, 108, 328, 354
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	2 cut(s)	97, 108
Bst4CI	ACNGT	4 cut(s)	81, 290, 406, 449
BstDEI	CTNAG	2 cut(s)	226, 456
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	118, 466
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	378, 424
BstSCI	CCNGG	2 cut(s)	327, 353
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	25, 38, 248
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	118, 466
BtsIMutI	CAGTG	1 cut(s)	315
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	487, 496
CviAII	CATG	5 cut(s)	98, 266, 271, 375, 421
CviJI	RGCY	4 cut(s)	16, 51, 181, 232
CviKI_1	RGCY	4 cut(s)	16, 51, 181, 232
CviQI	GTAC	2 cut(s)	487, 496
DdeI	CTNAG	2 cut(s)	226, 456
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	97, 108
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	97, 108
ErhI	CCWWGG	2 cut(s)	97, 108
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	5 cut(s)	101, 269, 274, 378, 424
FaqI	GGGAC	3 cut(s)	67, 371, 449
FatI	CATG	5 cut(s)	97, 265, 270, 374, 420
Fnu4HI	GCNGC	3 cut(s)	14, 52, 262
FokI	GGATG	2 cut(s)	125, 473
Fsp4HI	GCNGC	3 cut(s)	14, 52, 262
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	3 cut(s)	14, 52, 262
HapII	CCGG	2 cut(s)	328, 354
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	101, 269, 274, 378, 424
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	104, 350
HpaII	CCGG	2 cut(s)	328, 354
HphI	GGTGA	2 cut(s)	113, 115
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	187, 372
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	95, 406
HpyCH4III	ACNGT	4 cut(s)	81, 290, 406, 449
HpyCH4V	TGCA	3 cut(s)	8, 65, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	2 cut(s)	226, 456
Hsp92II	CATG	5 cut(s)	101, 269, 274, 378, 424
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	3 cut(s)	280, 341, 367
Lsp1109I	GCAGC	3 cut(s)	25, 38, 248
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	146
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	3 cut(s)	41, 256, 280
MnlI	CCTC	3 cut(s)	124, 160, 409
MseI	TTAA	2 cut(s)	444, 500
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	328, 354
MspR9I	CCNGG	2 cut(s)	329, 355
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	329, 355
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	5 cut(s)	101, 269, 274, 378, 424
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	2 cut(s)	378, 424
PciI	ACATGT	2 cut(s)	374, 420
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	104, 350
PkrI	GCNGC	3 cut(s)	15, 53, 263
PscI	ACATGT	2 cut(s)	374, 420
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	488, 497
RsaNI	GTAC	2 cut(s)	487, 496
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	444, 500
SatI	GCNGC	3 cut(s)	14, 52, 262
Sau3AI	GATC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	329, 355
SetI	ASST	4 cut(s)	18, 53, 183, 308
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	41, 256, 280
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	327, 353
StyI	CCWWGG	2 cut(s)	97, 108
TaaI	ACNGT	4 cut(s)	81, 290, 406, 449
TasI	AATT	3 cut(s)	41, 256, 280
TatI	WGTACW	2 cut(s)	486, 495
TfiI	GAWTC	2 cut(s)	104, 350
Tru1I	TTAA	2 cut(s)	444, 500
Tru9I	TTAA	2 cut(s)	444, 500
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	13, 51, 261
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	2 cut(s)	378, 424
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.