Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

20080373 .. 20097575

Gene Structure 17203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATTTATATGTAACAAACAAAGTTTATCAACTTCAGGCAGCTTCCATACCAAAAAGCAAGGGTGGTACATTTCTTCAAATGAAATTGGTTTACAATCAATTGGCACCAATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCGTCTTCATGTTTACTTGTAAGTTACTTGAATCTTTTCGACATAGTTGTATATAAGGTACGCTCAGACGGGAGGGCAAATATCTCGTCTTATGGAAGAAAAGCTACTACCAGTCAATTCTACAAAGTTATATTATCGTCCCTTCAACGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGCTAAGATAAAGCTTTTTGATGTTGACTTGGAGAGAGAAAAGGAATGTGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGTCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGTTCTATCTAGATATGAAGTTCGTCATATGCTTTGCTTCACAAGGTCGTTTCCTATCCCGAAATTTGCAACGCGTTATCAATGAGATCATATCTAAAGCAATGACATCATTTTCTGCAACAGGCATGGATCCCTATAGTCCACCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

219

Amino Acids

25.11

Weight (kDa)

5.31

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	582
AclWI	GGATC	2 cut(s)	632, 645
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	2 cut(s)	70, 204
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	80, 131, 175, 290
AluBI	AGCT	5 cut(s)	44, 248, 382, 453, 657
AluI	AGCT	5 cut(s)	44, 248, 382, 453, 657
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	632, 645
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	314, 316
AvaII	GGWCC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	340, 467
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	341, 518, 658
BfmI	CTRYAG	1 cut(s)	643
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	108, 492, 639
BpiI	GAAGAC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	298, 309
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	298, 309
BseGI	GGATG	3 cut(s)	319, 466, 478
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	653
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	337, 445, 594, 637
Bsp19I	CCATGG	1 cut(s)	298
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	108, 492, 639
BspPI	GGATC	2 cut(s)	632, 645
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	298, 309
BssMI	GATC	4 cut(s)	337, 445, 594, 637
BssT1I	CCWWGG	2 cut(s)	298, 309
Bst4CI	ACNGT	2 cut(s)	424, 510
BstDEI	CTNAG	2 cut(s)	208, 372
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	319, 466, 478
BstFNI	CGCG	1 cut(s)	582
BstKTI	GATC	4 cut(s)	340, 448, 597, 640
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	337, 445, 594, 637
BstSFI	CTRYAG	1 cut(s)	643
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	337, 637
BstYI	RGATCY	2 cut(s)	337, 637
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	319, 466, 478
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	69, 203
CviAII	CATG	3 cut(s)	153, 299, 634
CviJI	RGCY	9 cut(s)	44, 248, 371, 382, 436, 453, 484, 501, 657
CviKI_1	RGCY	9 cut(s)	44, 248, 371, 382, 436, 453, 484, 501, 657
CviQI	GTAC	2 cut(s)	69, 203
DdeI	CTNAG	2 cut(s)	208, 372
DpnI	GATC	4 cut(s)	339, 447, 596, 639
DpnII	GATC	4 cut(s)	337, 445, 594, 637
Eco130I	CCWWGG	2 cut(s)	298, 309
Eco147I	AGGCCT	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	298, 309
ErhI	CCWWGG	2 cut(s)	298, 309
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	3 cut(s)	156, 302, 637
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	152, 298, 633
FauNDI	CATATG	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	3 cut(s)	326, 473, 485
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	341, 518, 658
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	156, 302, 637
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	380, 451
HinfI	GANTC	2 cut(s)	175, 305
HphI	GGTGA	2 cut(s)	314, 316
Hpy166II	GTNNAC	4 cut(s)	94, 158, 394, 650
Hpy188I	TCNGA	2 cut(s)	211, 442
Hpy188III	TCNNGA	3 cut(s)	341, 518, 567
Hpy8I	GTNNAC	4 cut(s)	94, 158, 394, 650
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	424, 510
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	577, 626
HpyF3I	CTNAG	2 cut(s)	208, 372
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	156, 302, 637
Kzo9I	GATC	4 cut(s)	337, 445, 594, 637
LpnPI	CCDG	4 cut(s)	23, 131, 268, 615
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	3 cut(s)	341, 518, 658
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	13, 167
MalI	GATC	4 cut(s)	339, 447, 596, 639
MboI	GATC	4 cut(s)	337, 445, 594, 637
MboII	GAAGA	5 cut(s)	68, 141, 252, 347, 455
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	337, 637
MluCI	AATT	5 cut(s)	86, 101, 111, 260, 571
MluI	ACGCGT	1 cut(s)	580
MnlI	CCTC	5 cut(s)	210, 325, 361, 463, 504
MroXI	GAANNNNTTC	1 cut(s)	179
MunI	CAATTG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	298
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	4 cut(s)	337, 445, 594, 637
NlaIII	CATG	3 cut(s)	156, 302, 637
NlaIV	GGNNCC	3 cut(s)	108, 492, 639
PceI	AGGCCT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	175, 305
PkrI	GCNGC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	108, 492, 639
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	337, 637
RsaI	GTAC	2 cut(s)	70, 204
RsaNI	GTAC	2 cut(s)	69, 203
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	4 cut(s)	337, 445, 594, 637
Sau96I	GGNCC	1 cut(s)	491
SetI	ASST	8 cut(s)	46, 204, 250, 295, 384, 455, 556, 659
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	5 cut(s)	86, 101, 111, 260, 571
SseBI	AGGCCT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	341, 518, 658
StuI	AGGCCT	1 cut(s)	484
StyI	CCWWGG	2 cut(s)	298, 309
TaaI	ACNGT	2 cut(s)	424, 510
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	86, 101, 111, 260, 571
TfiI	GAWTC	2 cut(s)	175, 305
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	98, 141, 539
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	2 cut(s)	340, 517
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	3 cut(s)	341, 518, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.