Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

29957963 .. 29960894

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1157700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTGGATTACTATGAGCAGCTTGCTTCCAGGCCTTCTTACCATGATTCTCTCAAGGTTGTTGAGGCAGATATTCAGCATGCCAATATGCTGGCAGCTTCTATCCCCCGAAGCAAGGGTGGTACGGTTCTTCAAATGAAATTGGTTTACAATGACTTGGCACACATTTTCCTGTTTTTGCTTCAATGGATCGATTGCTCCTCTTCGTGTTTACTTTCAAGTTACTTAAATCTTTTCCACGTTATTGTTTATAAGGTACACTCAGATGGGAGATCAAATATCTCTTCATGTGGAAGGAAAGCTACCATCAGCGAATTCTACAATGTTATATTACCGTCCCTTCAGCGTCTCCACGGTGATTCATTGGAGATAGATCTCACCCAAGAGGAATCTCTAGAGATGGCTGCTAGAAAAAGATACAACGATAAGATAAAGCTTTTGGATGTGGACTTGGAGAGAGAAGATGAATGTGGCATCTGCTTGGTACCTTGCACCAAAATGGTTTTGCCGAACTGCTGCCATGCCATGTGCATTAATTGCTACCGTGAATGGAACACAAGATCAGAATCTTGCCCTTTTTGCCGGGGAAGTATAAAAAGAGTAAACTCAGGGGACCTGTGGGTTCTGACCTGCGGTAGCGATGTGGTTGACACTCAAACCGTGTTGAAGGAAGATATCTTGCGGTTCTACCTTTTTATCAACAGACTACCCAAAGATCTCCCGGACGCTCTGTTCTTAATGTACTACGAGTACTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

254

Amino Acids

29.09

Weight (kDa)

5.65

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	154 - 201	8.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	155 - 195	4.9e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	638
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AciI	CCGC	2 cut(s)	633, 682
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	5 cut(s)	124, 258, 486, 743, 752
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	134, 185, 219, 667
AjnI	CCWGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	4 cut(s)	22, 98, 302, 436
AluI	AGCT	4 cut(s)	22, 98, 302, 436
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	19, 95, 404, 516
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	534
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	613
AsuC2I	CCSGG	2 cut(s)	584, 722
AsuHPI	GGTGA	2 cut(s)	368, 370
AvaII	GGWCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	484
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbvI	GCAGC	4 cut(s)	31, 107, 391, 503
BccI	CCATC	3 cut(s)	260, 314, 394
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	584, 722
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	2 cut(s)	395, 408
BfuAI	ACCTGC	1 cut(s)	638
BglII	AGATCT	2 cut(s)	373, 715
BisI	GCNGC	4 cut(s)	20, 96, 405, 517
BlsI	GCNGC	4 cut(s)	21, 97, 406, 518
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	3 cut(s)	31, 584, 722
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	2 cut(s)	486, 614
BmrFI	CCNGG	3 cut(s)	31, 584, 722
BmsI	GCATC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	584, 722
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	352, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	352, 583
BseGI	GGATG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	276, 621
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	31, 107, 391, 503
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	583, 722
BslFI	GGGAC	2 cut(s)	322, 626
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	322, 626
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	189, 272, 373, 560, 715
BspACI	CCGC	2 cut(s)	633, 682
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	275, 620
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	486, 614
BspMI	ACCTGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	352, 583
BssMI	GATC	5 cut(s)	189, 272, 373, 560, 715
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	5 cut(s)	127, 336, 356, 545, 661
Bst6I	CTCTTC	2 cut(s)	208, 289
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	3 cut(s)	24, 81, 93
BstDEI	CTNAG	2 cut(s)	262, 607
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	5 cut(s)	192, 275, 376, 563, 718
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	5 cut(s)	189, 272, 373, 560, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	537, 579
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	29, 582, 720
BstV1I	GCAGC	4 cut(s)	31, 107, 391, 503
BstX2I	RGATCY	2 cut(s)	373, 715
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	2 cut(s)	373, 715
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	34
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	24, 81, 93
Cfr13I	GGNCC	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	2 cut(s)	335, 734
Csp6I	GTAC	5 cut(s)	123, 257, 485, 742, 751
CviAII	CATG	5 cut(s)	44, 80, 288, 521, 526
CviJI	RGCY	6 cut(s)	22, 34, 98, 302, 404, 436
CviKI_1	RGCY	6 cut(s)	22, 34, 98, 302, 404, 436
CviQI	GTAC	5 cut(s)	123, 257, 485, 742, 751
DdeI	CTNAG	2 cut(s)	262, 607
DpnI	GATC	5 cut(s)	191, 274, 375, 562, 717
DpnII	GATC	5 cut(s)	189, 272, 373, 560, 715
Eam1104I	CTCTTC	2 cut(s)	208, 289
EarI	CTCTTC	2 cut(s)	208, 289
Eco147I	AGGCCT	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	5 cut(s)	47, 83, 291, 524, 529
FaqI	GGGAC	2 cut(s)	322, 626
FatI	CATG	5 cut(s)	43, 79, 287, 520, 525
Fnu4HI	GCNGC	4 cut(s)	20, 96, 405, 517
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	4 cut(s)	20, 96, 405, 517
FspBI	CTAG	2 cut(s)	395, 408
GluI	GCNGC	4 cut(s)	20, 96, 405, 517
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	2 cut(s)	583, 722
HgaI	GACGC	2 cut(s)	335, 734
Hin1II	CATG	5 cut(s)	47, 83, 291, 524, 529
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	47, 359, 389, 566
HpaII	CCGG	2 cut(s)	583, 722
HphI	GGTGA	2 cut(s)	368, 370
Hpy166II	GTNNAC	6 cut(s)	148, 212, 259, 448, 604, 649
Hpy188I	TCNGA	3 cut(s)	265, 565, 627
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	6 cut(s)	148, 212, 259, 448, 604, 649
HpyAV	CCTTC	4 cut(s)	45, 288, 350, 661
HpyCH4III	ACNGT	5 cut(s)	127, 336, 356, 545, 661
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	492, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	537, 579
HpyF3I	CTNAG	2 cut(s)	262, 607
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	47, 83, 291, 524, 529
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	5 cut(s)	189, 272, 373, 560, 715
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	9 cut(s)	16, 43, 77, 185, 594, 596, 629, 643, 735
Lsp1109I	GCAGC	4 cut(s)	31, 107, 391, 503
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	395, 408
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	5 cut(s)	191, 274, 375, 562, 717
MboI	GATC	5 cut(s)	189, 272, 373, 560, 715
MboII	GAAGA	5 cut(s)	122, 195, 276, 473, 683
MflI	RGATCY	2 cut(s)	373, 715
MluCI	AATT	4 cut(s)	140, 314, 535, 756
MnlI	CCTC	3 cut(s)	58, 211, 379
MseI	TTAA	4 cut(s)	227, 534, 737, 755
MslI	CAYNNNNRTG	2 cut(s)	264, 497
MspI	CCGG	2 cut(s)	583, 722
MspR9I	CCNGG	3 cut(s)	31, 584, 722
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	537, 579
NciI	CCSGG	2 cut(s)	584, 722
NdeII	GATC	5 cut(s)	189, 272, 373, 560, 715
NlaIII	CATG	5 cut(s)	47, 83, 291, 524, 529
NlaIV	GGNNCC	2 cut(s)	486, 614
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	34
PfeI	GAWTC	4 cut(s)	47, 359, 389, 566
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	4 cut(s)	21, 97, 406, 518
PpuMI	RGGWCCY	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	486, 614
PspPI	GGNCC	1 cut(s)	613
PspPPI	RGGWCCY	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	373, 715
RsaI	GTAC	5 cut(s)	124, 258, 486, 743, 752
RsaNI	GTAC	5 cut(s)	123, 257, 485, 742, 751
RseI	CAYNNNNRTG	2 cut(s)	264, 497
SaqAI	TTAA	4 cut(s)	227, 534, 737, 755
SatI	GCNGC	4 cut(s)	20, 96, 405, 517
Sau3AI	GATC	5 cut(s)	189, 272, 373, 560, 715
Sau96I	GGNCC	1 cut(s)	613
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	3 cut(s)	31, 584, 722
SfaNI	GCATC	1 cut(s)	483
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	2 cut(s)	264, 497
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	4 cut(s)	140, 314, 535, 756
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	633, 682
SspMI	CTAG	2 cut(s)	395, 408
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	29, 582, 720
TaaI	ACNGT	5 cut(s)	127, 336, 356, 545, 661
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	140, 314, 535, 756
TatI	WGTACW	2 cut(s)	741, 750
TfiI	GAWTC	4 cut(s)	47, 359, 389, 566
Tru1I	TTAA	4 cut(s)	227, 534, 737, 755
Tru9I	TTAA	4 cut(s)	227, 534, 737, 755
TseI	GCWGC	4 cut(s)	19, 95, 404, 516
TspDTI	ATGAA	4 cut(s)	152, 276, 351, 480
VpaK11BI	GGWCC	1 cut(s)	613
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	314
XbaI	TCTAGA	1 cut(s)	394
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	395, 408
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.