Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008136

Physical Location & Seq

Genomic Coordinates Forward (+)

13995282 .. 13998044

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G157700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTGGATTATTACGAGCAGCTTGCTGCTAGTCCTTACAATGATTCTCTTAAGGTTCTTGAGGCTGATATTCAGCATGCCAATATGCTGGCAGCTTCCATCCCCAGACGCAAGAGTGGTACGGTTCTTCAAATGAAATTGGTTTACAATCACTTGGCACCCATTTTCCTGTTTTTGCTTCAATGGATTGATTGCTCCTCTTCATGTTTACTTTCAAGTTACTTAAATCTTTTCCACATAATTGTATATAAGGTGCGCACAGATGGGAGGTCAAATATCTCTTCATGTGGAAGGAAAGCTACCGTCAGCGAATTCTACAATGTTATATTACCATCCCTTCAGCGTCTCCATGGTGATTCATTGGAGATGGATATCACCCAAGAGGAAGCTCTAGAGATGGCTGTTAGGAAGAGATATGAGGATAAGATAAAGCTTTCAGATGTAGACTTGGAGAGAGAAAATGAGTGTGGCATCTGCTTGGAGCCTTGTACCAAAATGGTTTTGCCAAACTGTTGCCATGCCATGTGCATTAATTGCTACCGCGATTGGAACACAAGATCGGAATCTTGCCCGTTCTGCCGGGGAAGTATAAAGAGAGTGAATTCAGGGGACTTGTGGGTTCTGACATGCGGCAGTGATGTGGTTGACACTCAAACTGTGTTGAAGGAGGATATGTTGCGGTTCTATCTTTTTATTAACAGCCTGCCAAAAGATCTCCCGGATGCTCTATTCTTAATGTATTATGAGTACTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

253

Amino Acids

29.01

Weight (kDa)

5.43

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07270 FvH4_5g07270 FvH4_5g07270
malus_domestica	MD06G1157700.v1.1 MD14G1164300.v1.1
prunus_persica	Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1 Prupe.5G157700_v2.0.a1
pyrus_communis	pycom06g14080 pycom14g13700
rosa_chinensis	RchiOBHm_Chr3g0493731 RchiOBHm_Chr7g0191361
rosa_laevigata	RLG00000004462
rosa_multiflora	Rmu_sc0004860.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438310 Rroxscaffold_3G00263890
rosa_rugosa	Rorug06G0510200
rosa_samantha	Rh5AG177300 Rh7AG117700 Rh7BG119600 Rh7CG122600 Rh7CG210800 Rh7DG120700
rosa_wichuraiana	Rw5G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	543
AciI	CCGC	3 cut(s)	541, 630, 679
AcsI	RAATTY	2 cut(s)	311, 601
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	121, 490, 749
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	131, 182, 216, 664
AluBI	AGCT	5 cut(s)	22, 95, 299, 389, 433
AluI	AGCT	5 cut(s)	22, 95, 299, 389, 433
Alw26I	GTCTC	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	19, 26, 92
ApoI	RAATTY	2 cut(s)	311, 601
AseI	ATTAAT	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	258
AsuC2I	CCSGG	2 cut(s)	581, 719
AsuHPI	GGTGA	2 cut(s)	365, 367
BanI	GGYRCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbvI	GCAGC	3 cut(s)	13, 31, 104
BccI	CCATC	5 cut(s)	107, 257, 340, 361, 391
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BcnI	CCSGG	2 cut(s)	581, 719
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	30, 392
BfrI	CTTAAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	4 cut(s)	20, 27, 93, 631
BlsI	GCNGC	4 cut(s)	21, 28, 94, 632
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	2 cut(s)	581, 719
BmiI	GGNNCC	2 cut(s)	159, 483
BmrFI	CCNGG	2 cut(s)	581, 719
BmsI	GCATC	2 cut(s)	480, 712
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	581, 719
BsaBI	GATNNNNATC	2 cut(s)	371, 562
BsaJI	CCNNGG	2 cut(s)	349, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bse8I	GATNNNNATC	2 cut(s)	371, 562
BseDI	CCNNGG	2 cut(s)	349, 580
BseGI	GGATG	3 cut(s)	99, 332, 727
BseJI	GATNNNNATC	2 cut(s)	371, 562
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	13, 31, 104
Bsh1236I	CGCG	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	580, 719
BslFI	GGGAC	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	557, 712
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	541, 630, 679
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	159, 483
BspT107I	GGYRCC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	349, 580
BssMI	GATC	2 cut(s)	557, 712
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	4 cut(s)	124, 304, 512, 658
Bst6I	CTCTTC	3 cut(s)	205, 286, 404
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	24, 78, 90, 704
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	99, 332, 727
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	560, 715
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	557, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 576
BstNSI	RCATGY	2 cut(s)	80, 630
BstSCI	CCNGG	2 cut(s)	579, 717
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	13, 31, 104
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	712
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	99, 332, 727
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	4 cut(s)	24, 78, 90, 704
CfoI	GCGC	1 cut(s)	258
CseI	GACGC	2 cut(s)	117, 332
Csp6I	GTAC	3 cut(s)	120, 489, 748
CviAII	CATG	7 cut(s)	77, 204, 285, 350, 518, 523, 627
CviJI	RGCY	9 cut(s)	22, 65, 95, 299, 389, 401, 433, 484, 702
CviKI_1	RGCY	9 cut(s)	22, 65, 95, 299, 389, 401, 433, 484, 702
CviQI	GTAC	3 cut(s)	120, 489, 748
DpnI	GATC	2 cut(s)	559, 714
DpnII	GATC	2 cut(s)	557, 712
Eam1104I	CTCTTC	3 cut(s)	205, 286, 404
EarI	CTCTTC	3 cut(s)	205, 286, 404
Eco130I	CCWWGG	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	323
EcoRI	GAATTC	2 cut(s)	311, 601
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	7 cut(s)	80, 207, 288, 353, 521, 526, 630
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	7 cut(s)	76, 203, 284, 349, 517, 522, 626
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	20, 27, 93, 631
FokI	GGATG	3 cut(s)	86, 319, 734
Fsp4HI	GCNGC	4 cut(s)	20, 27, 93, 631
FspAI	RTGCGCAY	1 cut(s)	257
FspBI	CTAG	2 cut(s)	30, 392
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	20, 27, 93, 631
HapII	CCGG	2 cut(s)	580, 719
HgaI	GACGC	2 cut(s)	117, 332
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	7 cut(s)	80, 207, 288, 353, 521, 526, 630
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	44, 356, 563
HpaII	CCGG	2 cut(s)	580, 719
HphI	GGTGA	2 cut(s)	365, 367
Hpy166II	GTNNAC	4 cut(s)	145, 209, 445, 646
Hpy188I	TCNGA	3 cut(s)	439, 562, 624
Hpy188III	TCNNGA	2 cut(s)	59, 392
Hpy8I	GTNNAC	4 cut(s)	145, 209, 445, 646
HpyAV	CCTTC	3 cut(s)	285, 347, 658
HpyCH4III	ACNGT	4 cut(s)	124, 304, 512, 658
HpyCH4V	TGCA	1 cut(s)	528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 576
Hsp92II	CATG	7 cut(s)	80, 207, 288, 353, 521, 526, 630
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	557, 712
LmnI	GCTCC	2 cut(s)	200, 481
LpnPI	CCDG	7 cut(s)	74, 118, 182, 591, 593, 716, 732
Lsp1109I	GCAGC	3 cut(s)	13, 31, 104
LweI	GCATC	2 cut(s)	480, 712
MaeI	CTAG	2 cut(s)	30, 392
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	559, 714
MboI	GATC	2 cut(s)	557, 712
MboII	GAAGA	4 cut(s)	119, 192, 273, 421
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	6 cut(s)	137, 240, 311, 532, 601, 753
MnlI	CCTC	6 cut(s)	55, 208, 261, 376, 412, 661
MseI	TTAA	6 cut(s)	51, 224, 531, 696, 734, 752
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	580, 719
MspR9I	CCNGG	2 cut(s)	581, 719
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	534, 576
NciI	CCSGG	2 cut(s)	581, 719
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	557, 712
NlaIII	CATG	7 cut(s)	80, 207, 288, 353, 521, 526, 630
NlaIV	GGNNCC	2 cut(s)	159, 483
NsbI	TGCGCA	1 cut(s)	257
NspI	RCATGY	2 cut(s)	80, 630
PaeI	GCATGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	44, 356, 563
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	4 cut(s)	21, 28, 94, 632
PshBI	ATTAAT	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	159, 483
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	3 cut(s)	121, 490, 749
RsaNI	GTAC	3 cut(s)	120, 489, 748
SaqAI	TTAA	6 cut(s)	51, 224, 531, 696, 734, 752
SatI	GCNGC	4 cut(s)	20, 27, 93, 631
Sau3AI	GATC	2 cut(s)	557, 712
ScaI	AGTACT	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	581, 719
SetI	ASST	8 cut(s)	24, 57, 97, 255, 272, 301, 391, 435
SfaNI	GCATC	2 cut(s)	480, 712
SmlI	CTYRAG	2 cut(s)	50, 59
SmoI	CTYRAG	2 cut(s)	50, 59
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	6 cut(s)	137, 240, 311, 532, 601, 753
SsiI	CCGC	3 cut(s)	541, 630, 679
SspMI	CTAG	2 cut(s)	30, 392
StyD4I	CCNGG	2 cut(s)	579, 717
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	4 cut(s)	124, 304, 512, 658
TasI	AATT	6 cut(s)	137, 240, 311, 532, 601, 753
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	44, 356, 563
Tru1I	TTAA	6 cut(s)	51, 224, 531, 696, 734, 752
Tru9I	TTAA	6 cut(s)	51, 224, 531, 696, 734, 752
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	3 cut(s)	19, 26, 92
TspDTI	ATGAA	4 cut(s)	149, 192, 273, 348
TspRI	CASTG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	2 cut(s)	311, 601
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	2 cut(s)	80, 630
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	30, 392
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.