Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Forward (+)

6734662 .. 6736995

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11890.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATTGCTGCTCCGGTTTATGTGCCTGCTTTGTCGGAAAAGCCTGCCAGGCACAAGAAGACGACGACGTTTTGGAATCGTTTGATCTCTTCTTCGAGTTACAAGCCCTGCAAATCGCCACCGGCTTCTTCTCCGATGTCAACAAACTCGGCCACGGCGGCTTCGGCCCGGTTTACAAGGGTTTGCTGCCAAATGGGGTGGAAGTAGCTGTAAAGAAGCTTTCTTTGGATTCAAGGCAAGGAGTGAGGGAATTTACCAATGAGGTAAAACTGTTACTCAGAGTTCAGCATAAGAATTTGGTAATGTTACTGGGGTGTTGTGTGCAAGGACCTGAGAAGATGTTGGTTTATGAGTACCTCCCTAACAAGAGCCTTGATTTCTTTATTTTTGATCGAACTAAATCTGCATCTCTGGATTGGATGACGAGGTTTAGGATAATAGTAGGAGTGGCTAGAGGTCTTCTCTACCTCCATGAGGAGGCGCCGGAGAGGATTATTCATAGGGATATTAAAGCAAGTAATATATTGTTGGATGAGAAGCTCAATCCGAAAATCGCGGATTTTGGCTTGGCAAGGCTGTTTCCTGGGGAGGACACTCATCTAGATACATTTAGGATTTCTGGTACTCACGGTTATATGGCTCCTGAATATGCATTGCATGGATATTTGTCGGTGAAGACAGATGTTTTCAGTTATGGAGTCTTGTTGTTAGAGATTGTCAGCGGTAGGAGGACGCATGATCGGCTGCTTGAAAGAGAAAAGGCAGACCTCTTGAGTTATACATGGATGTTGTATGAAGCAGGTAAGGCAATGGAATTAGTTGATCCATCCCTAGCCAAGTACAATCATGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAGTCATGCCAATAGGCCTGACATGAACTCTGTTCATCTCATGTTTTCTAGCGATTCATTTACTCTCCCCAGACCAGGTAAACCTGGTCTTATAGGCCGAGGAGGACGGTGGACTACTGCCTCTACTTCGGCGCTAACCACCAATACCAATGGTAGCAGTGGATTCACTGGTCGTACCAAGGCTTCCGGGGGCAGTAGTTTTGTTGAGGAGTACTCCAGAAATTCAATTTCTATTTCTTCTATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

385

Amino Acids

42.56

Weight (kDa)

6.14

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 203	2.3e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 199	8.2e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	1 cut(s)	557
AciI	CCGC	3 cut(s)	159, 557, 723
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	3 cut(s)	251, 295, 1117
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	5 cut(s)	356, 625, 842, 1072, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	475, 478, 971
AgsI	TTSAA	3 cut(s)	234, 752, 1122
AjnI	CCWGG	4 cut(s)	48, 583, 970, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	209, 220, 541, 874
AluI	AGCT	4 cut(s)	209, 220, 541, 874
AlwI	GGATC	1 cut(s)	818
AoxI	GGCC	4 cut(s)	151, 166, 911, 991
ApeKI	GCWGC	4 cut(s)	9, 187, 745, 857
ApoI	RAATTY	3 cut(s)	251, 295, 1117
AspLEI	GCGC	2 cut(s)	484, 1030
AspS9I	GGNCC	2 cut(s)	167, 329
AsuC2I	CCSGG	2 cut(s)	170, 1084
AsuHPI	GGTGA	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	481
BarI	GAAGNNNNNNTAC	2 cut(s)	1063, 1095
BbsI	GAAGAC	3 cut(s)	66, 452, 683
BbvI	GCAGC	3 cut(s)	174, 732, 869
BccI	CCATC	1 cut(s)	835
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	4 cut(s)	50, 585, 972, 981
BcnI	CCSGG	2 cut(s)	170, 1084
BfaI	CTAG	5 cut(s)	453, 602, 833, 875, 945
BfoI	RGCGCY	2 cut(s)	485, 1031
BfuAI	ACCTGC	1 cut(s)	791
BglI	GCCNNNNNGGC	2 cut(s)	50, 159
BisI	GCNGC	5 cut(s)	10, 160, 188, 746, 858
BlsI	GCNGC	5 cut(s)	11, 161, 189, 747, 859
BmcAI	AGTACT	1 cut(s)	1109
Bme1390I	CCNGG	6 cut(s)	50, 170, 585, 972, 981, 1084
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	167, 329
BmiI	GGNNCC	2 cut(s)	483, 642
BmrFI	CCNGG	6 cut(s)	50, 170, 585, 972, 981, 1084
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	320
BpiI	GAAGAC	3 cut(s)	66, 452, 683
BplI	GAGNNNNNCTC	4 cut(s)	447, 479, 1094, 1126
BpmI	CTGGAG	1 cut(s)	1096
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	2 cut(s)	170, 1084
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	154, 584, 994, 1074, 1083
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 478, 971
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	315, 1069
Bse3DI	GCAATG	3 cut(s)	653, 816, 867
BseBI	CCWGG	4 cut(s)	50, 585, 972, 981
BseDI	CCNNGG	5 cut(s)	154, 584, 994, 1074, 1083
BseGI	GGATG	4 cut(s)	426, 538, 792, 827
BseLI	CCNNNNNNNGG	3 cut(s)	475, 478, 971
BseMI	GCAATG	3 cut(s)	653, 816, 867
BseMII	CTCAG	2 cut(s)	292, 324
BseNI	ACTGG	2 cut(s)	315, 1069
BseRI	GAGGAG	3 cut(s)	491, 1011, 1118
BseXI	GCAGC	3 cut(s)	174, 732, 869
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	4 cut(s)	153, 168, 913, 993
BshNI	GGYRCC	1 cut(s)	481
BsiSI	CCGG	5 cut(s)	15, 123, 170, 485, 1083
BslI	CCNNNNNNNGG	3 cut(s)	475, 478, 971
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	4 cut(s)	153, 168, 913, 993
Bsp143I	GATC	4 cut(s)	85, 391, 739, 823
BspACI	CCGC	3 cut(s)	159, 557, 723
BspANI	GGCC	4 cut(s)	153, 168, 913, 993
BspCNI	CTCAG	2 cut(s)	291, 325
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	483, 642
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	3 cut(s)	653, 816, 867
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	315, 1069
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	154, 584, 994, 1074, 1083
BssMI	GATC	4 cut(s)	85, 391, 739, 823
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	1 cut(s)	1074
Bst2UI	CCWGG	4 cut(s)	50, 585, 972, 981
Bst4CI	ACNGT	3 cut(s)	273, 632, 1005
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	28, 46
BstDEI	CTNAG	2 cut(s)	278, 333
BstDSI	CCRYGG	1 cut(s)	154
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	4 cut(s)	426, 538, 792, 827
BstFNI	CGCG	1 cut(s)	557
BstH2I	RGCGCY	2 cut(s)	485, 1031
BstHHI	GCGC	2 cut(s)	484, 1030
BstKTI	GATC	4 cut(s)	88, 394, 742, 826
BstMBI	GATC	4 cut(s)	85, 391, 739, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 159, 165, 742, 806, 902
BstNI	CCWGG	4 cut(s)	50, 585, 972, 981
BstSCI	CCNGG	6 cut(s)	48, 168, 583, 970, 979, 1082
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	174, 732, 869
BstV2I	GAAGAC	3 cut(s)	66, 452, 683
BsuRI	GGCC	4 cut(s)	153, 168, 913, 993
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	426, 538, 792, 827
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	2 cut(s)	1060, 1062
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	28, 46
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	2 cut(s)	484, 1030
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	167, 329
CseI	GACGC	1 cut(s)	742
CsiI	ACCWGGT	2 cut(s)	970, 979
Csp6I	GTAC	5 cut(s)	355, 624, 841, 1071, 1108
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	8 cut(s)	473, 659, 737, 783, 848, 902, 919, 937
CviQI	GTAC	5 cut(s)	355, 624, 841, 1071, 1108
DdeI	CTNAG	2 cut(s)	278, 333
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	4 cut(s)	87, 393, 741, 825
DpnII	GATC	4 cut(s)	85, 391, 739, 823
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	1074
Eco147I	AGGCCT	1 cut(s)	913
Eco47I	GGWCC	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	4 cut(s)	48, 583, 970, 979
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT22I	ATGCAT	1 cut(s)	655
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	1074
FaeI	CATG	8 cut(s)	476, 662, 740, 786, 851, 905, 922, 940
FatI	CATG	8 cut(s)	472, 658, 736, 782, 847, 901, 918, 936
Fnu4HI	GCNGC	5 cut(s)	10, 160, 188, 746, 858
FokI	GGATG	4 cut(s)	433, 545, 799, 814
Fsp4HI	GCNGC	5 cut(s)	10, 160, 188, 746, 858
FspBI	CTAG	5 cut(s)	453, 602, 833, 875, 945
GlaI	GCGC	2 cut(s)	483, 1029
GluI	GCNGC	5 cut(s)	10, 160, 188, 746, 858
GsuI	CTGGAG	1 cut(s)	1096
HaeII	RGCGCY	2 cut(s)	485, 1031
HaeIII	GGCC	4 cut(s)	153, 168, 913, 993
HapII	CCGG	5 cut(s)	15, 123, 170, 485, 1083
HgaI	GACGC	1 cut(s)	742
HhaI	GCGC	2 cut(s)	484, 1030
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	8 cut(s)	476, 662, 740, 786, 851, 905, 922, 940
Hin6I	GCGC	2 cut(s)	482, 1028
HinP1I	GCGC	2 cut(s)	482, 1028
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	5 cut(s)	77, 230, 699, 950, 1059
HpaII	CCGG	5 cut(s)	15, 123, 170, 485, 1083
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	4 cut(s)	142, 175, 977, 1008
Hpy188I	TCNGA	4 cut(s)	38, 136, 281, 549
Hpy188III	TCNNGA	6 cut(s)	413, 602, 644, 772, 848, 1113
Hpy8I	GTNNAC	4 cut(s)	142, 175, 977, 1008
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	1 cut(s)	1139
HpyCH4III	ACNGT	3 cut(s)	273, 632, 1005
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	112, 325, 407, 653, 658, 867
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 159, 165, 742, 806, 902
HpyF3I	CTNAG	2 cut(s)	278, 333
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	8 cut(s)	476, 662, 740, 786, 851, 905, 922, 940
HspAI	GCGC	2 cut(s)	482, 1028
KasI	GGCGCC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	85, 391, 739, 823
LmnI	GCTCC	2 cut(s)	17, 646
Lsp1109I	GCAGC	3 cut(s)	174, 732, 869
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	2 cut(s)	970, 979
MaeI	CTAG	5 cut(s)	453, 602, 833, 875, 945
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	99, 273, 306
MalI	GATC	4 cut(s)	87, 393, 741, 825
MboI	GATC	4 cut(s)	85, 391, 739, 823
MboII	GAAGA	8 cut(s)	71, 82, 85, 121, 349, 452, 688, 1125
MluCI	AATT	5 cut(s)	251, 295, 815, 1117, 1122
Mly113I	GGCGCC	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	2 cut(s)	16, 510
Mph1103I	ATGCAT	1 cut(s)	655
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	723
MspI	CCGG	5 cut(s)	15, 123, 170, 485, 1083
MspR9I	CCNGG	6 cut(s)	50, 170, 585, 972, 981, 1084
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	4 cut(s)	50, 585, 972, 981
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	6 cut(s)	50, 159, 165, 742, 806, 902
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	2 cut(s)	170, 1084
NdeII	GATC	4 cut(s)	85, 391, 739, 823
NlaIII	CATG	8 cut(s)	476, 662, 740, 786, 851, 905, 922, 940
NlaIV	GGNNCC	2 cut(s)	483, 642
NmeAIII	GCCGAG	2 cut(s)	129, 1019
NsiI	ATGCAT	1 cut(s)	655
PagI	TCATGA	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	77, 230, 950, 1059
PkrI	GCNGC	5 cut(s)	11, 161, 189, 747, 859
PleI	GAGTC	1 cut(s)	707
PluTI	GGCGCC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	4 cut(s)	48, 583, 970, 979
PspGI	CCWGG	4 cut(s)	48, 583, 970, 979
PspN4I	GGNNCC	2 cut(s)	483, 642
PspPI	GGNCC	2 cut(s)	167, 329
PspPPI	RGGWCCY	1 cut(s)	329
RsaI	GTAC	5 cut(s)	356, 625, 842, 1072, 1109
RsaNI	GTAC	5 cut(s)	355, 624, 841, 1071, 1108
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	5 cut(s)	10, 160, 188, 746, 858
Sau3AI	GATC	4 cut(s)	85, 391, 739, 823
Sau96I	GGNCC	2 cut(s)	167, 329
ScaI	AGTACT	1 cut(s)	1109
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	6 cut(s)	50, 170, 585, 972, 981, 1084
SexAI	ACCWGGT	2 cut(s)	970, 979
SfaNI	GCATC	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	483
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	5 cut(s)	251, 295, 815, 1117, 1122
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	3 cut(s)	159, 557, 723
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	5 cut(s)	453, 602, 833, 875, 945
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	6 cut(s)	48, 168, 583, 970, 979, 1082
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	3 cut(s)	273, 632, 1005
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	96, 394
TasI	AATT	5 cut(s)	251, 295, 815, 1117, 1122
TatI	WGTACW	2 cut(s)	840, 1107
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	4 cut(s)	77, 230, 950, 1059
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	1060, 1069
TseI	GCWGC	4 cut(s)	9, 187, 745, 857
TspDTI	ATGAA	5 cut(s)	488, 810, 920, 935, 942
TspRI	CASTG	2 cut(s)	1060, 1069
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	3 cut(s)	251, 295, 1117
XbaI	TCTAGA	1 cut(s)	601
XspI	CTAG	5 cut(s)	453, 602, 833, 875, 945
ZrmI	AGTACT	1 cut(s)	1109
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.