Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Forward (+)

5134833 .. 5136777

Gene Structure 1945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATTGTTGCTCTGGTTTGTGTGCCTGCTTTGCCCGAAAAGGCGCGCAGAGCCAAGACGACGACGCTGCTTCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCCACCGGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGACGGATGTTTTCAGTTATGGAGTATTGGTGTTAGAGATTGTCAGTGGGAGAAAGAACCATGATCGACGGCTTGATAGAGAAAAGGCAGACCTCTTGAGCTATACATGGAAGTTGTATGAAGCAGGAAAGGCATTGGAATTAGTTGACCCAGCCCTAGCCAGGTGCAATCGTGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAATCTTGCAGATAGGCCTGACATGAACTCTGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGGACGGTGGACTACTACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACCAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTATTCTAGAAATTCAATTTCTTATTCTTCTATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.59

Weight (kDa)

5.42

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	2 cut(s)	339, 473
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	491, 624
AjnI	CCWGG	3 cut(s)	338, 472, 481
AluBI	AGCT	3 cut(s)	107, 279, 376
AluI	AGCT	3 cut(s)	107, 279, 376
AoxI	GGCC	4 cut(s)	166, 413, 493, 528
ApeKI	GCWGC	2 cut(s)	68, 359
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsiGI	ACCGGT	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	572
AspLEI	GCGC	2 cut(s)	47, 49
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	55, 371
BceAI	ACGGC	2 cut(s)	263, 480
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	3 cut(s)	340, 474, 483
BcnI	CCSGG	1 cut(s)	170
BfaI	CTAG	4 cut(s)	335, 377, 552, 615
BisI	GCNGC	2 cut(s)	69, 360
BlsI	GCNGC	2 cut(s)	70, 361
Bme1390I	CCNGG	4 cut(s)	170, 340, 474, 483
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	4 cut(s)	170, 340, 474, 483
BpuEI	CTTGAG	2 cut(s)	295, 430
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	135, 496, 576
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 473
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	340, 474, 483
BseDI	CCNNGG	3 cut(s)	135, 496, 576
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	339, 473
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	571
BsePI	GCGCGC	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	2 cut(s)	55, 371
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	4 cut(s)	168, 415, 495, 530
BshNI	GGYRCC	1 cut(s)	572
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	123, 170
BslI	CCNNNNNNNGG	2 cut(s)	339, 473
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	168, 415, 495, 530
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	4 cut(s)	168, 415, 495, 530
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	135, 496, 576
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	3 cut(s)	340, 474, 483
Bst4CI	ACNGT	2 cut(s)	158, 507
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	28, 47
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	47, 49
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 51, 308, 404
BstNI	CCWGG	3 cut(s)	340, 474, 483
BstSCI	CCNGG	4 cut(s)	168, 338, 472, 481
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	55, 371
BsuRI	GGCC	4 cut(s)	168, 415, 495, 530
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	229, 564
Cac8I	GCNNGC	2 cut(s)	28, 47
CfoI	GCGC	2 cut(s)	47, 49
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	573
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	239, 285, 421, 439
CviQI	GTAC	1 cut(s)	573
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	338, 472, 481
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	4 cut(s)	242, 288, 424, 442
FaiI	YATR	8 cut(s)	198, 240, 282, 286, 297, 388, 422, 440
FatI	CATG	4 cut(s)	238, 284, 420, 438
Fnu4HI	GCNGC	2 cut(s)	69, 360
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	69, 360
FspBI	CTAG	4 cut(s)	335, 377, 552, 615
GlaI	GCGC	2 cut(s)	46, 48
GluI	GCNGC	2 cut(s)	69, 360
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	168, 415, 495, 530
HapII	CCGG	2 cut(s)	123, 170
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	47, 49
Hin1II	CATG	4 cut(s)	242, 288, 424, 442
Hin6I	GCGC	2 cut(s)	45, 47
HinP1I	GCGC	2 cut(s)	45, 47
HincII	GTYRAC	2 cut(s)	142, 325
HindII	GTYRAC	2 cut(s)	142, 325
HinfI	GANTC	3 cut(s)	77, 452, 561
HpaII	CCGG	2 cut(s)	123, 170
Hpy166II	GTNNAC	5 cut(s)	142, 175, 325, 479, 510
Hpy188I	TCNGA	4 cut(s)	76, 85, 136, 152
Hpy188III	TCNNGA	3 cut(s)	274, 350, 615
Hpy8I	GTNNAC	5 cut(s)	142, 175, 325, 479, 510
Hpy99I	CGWCG	3 cut(s)	65, 68, 249
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	158, 507
HpyCH4V	TGCA	4 cut(s)	112, 345, 369, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 51, 308, 404
Hsp92II	CATG	4 cut(s)	242, 288, 424, 442
HspAI	GCGC	2 cut(s)	45, 47
KpnI	GGTACC	1 cut(s)	576
Kzo9I	GATC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	55, 371
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	4 cut(s)	335, 377, 552, 615
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	121, 455, 627
MluCI	AATT	3 cut(s)	317, 619, 624
MnlI	CCTC	6 cut(s)	130, 281, 349, 494, 529, 598
MspI	CCGG	2 cut(s)	123, 170
MspR9I	CCNGG	4 cut(s)	170, 340, 474, 483
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	3 cut(s)	340, 474, 483
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	32, 51, 308, 404
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	242, 288, 424, 442
NlaIV	GGNNCC	1 cut(s)	574
PauI	GCGCGC	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	77, 452, 561
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	70, 361
Psp6I	CCWGG	3 cut(s)	338, 472, 481
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	3 cut(s)	338, 472, 481
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	167
PteI	GCGCGC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SatI	GCNGC	2 cut(s)	69, 360
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	4 cut(s)	170, 340, 474, 483
SexAI	ACCWGGT	1 cut(s)	472
SmlI	CTYRAG	2 cut(s)	274, 445
SmoI	CTYRAG	2 cut(s)	274, 445
Sse9I	AATT	3 cut(s)	317, 619, 624
SseBI	AGGCCT	1 cut(s)	415
SspMI	CTAG	4 cut(s)	335, 377, 552, 615
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	168, 338, 472, 481
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	158, 507
TaqI	TCGA	1 cut(s)	244
TasI	AATT	3 cut(s)	317, 619, 624
TfiI	GAWTC	3 cut(s)	77, 452, 561
TscAI	CASTG	2 cut(s)	229, 571
TseI	GCWGC	2 cut(s)	68, 359
TspDTI	ATGAA	4 cut(s)	312, 422, 437, 444
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	229, 571
XapI	RAATTY	1 cut(s)	619
XbaI	TCTAGA	1 cut(s)	614
XspI	CTAG	4 cut(s)	335, 377, 552, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.