Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008747.1

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

9273 .. 11455

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008747.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggattgttgctctggtttgtgtgcctgctttgcccgaaaaggcgcgcagagccaagacgacgacgctgcttcggaatcgtctgacctgttttttgagttacaagctctgcaaatcgccaccggtttcttctccgaggtcaacaaactcggacacggtggcttcggcccggtttacaagggtctgttgccaaatggagtagaagtagctataaagaaactctctttagattcgaggcaaggagtgagggaatttaccaatgaggtaaaactgttacttagagttcagcacaagaatttggtaatgttaatggggtgttgtgtacaaggacctgagaagatgttggtttatgagtacctcccaaacaagagccttgattacttaatttttgatcaaatcaaatctgcatctctggattggatgacgaggtttcggattataacaggagtggctagaggtcttctttaccttcatgaagaggcgccggtgaggatcattcatagggatattaaagcaagtaatatattgttggatgagaagcttgatccgaaaatcgcggattttggattggcaaggctgtttcctggggaagacactcatgtaaatacatttaggatttctggtactcatggttatatggcccctgaatatgcaatgcatggatatttgtcggtgaagacggatgttttcagttatggagtattggtgttagagattgtcagtgggagaaagaaccatgatcgacggcttgatagagaaaaggcagacctcttgagctatacatggaagttgtatgaagcaggaaaggcattggaattagttgacccagccctagccaggtgcaatcgtgatgaggcagcaatgtgcattcagctagggcttttatgttgtcaggcaaatcttgcagataggcctgacatgaactctgttcatctcatgttctcaagcgattcatttactcttcccagaccaggtaaacctggacttcaaggccgtggaggacggtggactactacctctacttcggcctttaccaacaatactaatgctagtagtggattcactggtggtaccaaggtttctgggggcagtagttttgttgaggagtattctagaaattcaatttcttattcttctattgatgaaggtaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

384

Amino Acids

42.46

Weight (kDa)

6.52

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc65I	GGTACC	1 cut(s)	1070
AccB1I	GGYRCC	2 cut(s)	481, 1070
AccII	CGCG	2 cut(s)	47, 557
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	500, 539
AcsI	RAATTY	3 cut(s)	251, 295, 1117
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	4 cut(s)	324, 356, 625, 1072
AfiI	CCNNNNNNNGG	2 cut(s)	837, 971
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	989, 1122
AjnI	CCWGG	4 cut(s)	583, 836, 970, 979
AluBI	AGCT	5 cut(s)	107, 209, 541, 777, 874
AluI	AGCT	5 cut(s)	107, 209, 541, 777, 874
AlwI	GGATC	2 cut(s)	500, 539
AoxI	GGCC	5 cut(s)	166, 639, 911, 991, 1026
ApeKI	GCWGC	2 cut(s)	68, 857
ApoI	RAATTY	3 cut(s)	251, 295, 1117
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsiGI	ACCGGT	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	1070
AspLEI	GCGC	3 cut(s)	47, 49, 484
AspS9I	GGNCC	3 cut(s)	167, 329, 640
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	499, 685
AvaII	GGWCC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	1062, 1095
BanI	GGYRCC	2 cut(s)	481, 1070
BbsI	GAAGAC	3 cut(s)	452, 597, 683
BbvI	GCAGC	2 cut(s)	55, 869
BceAI	ACGGC	2 cut(s)	761, 978
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	4 cut(s)	585, 838, 972, 981
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	170
BfaI	CTAG	5 cut(s)	453, 833, 875, 1050, 1113
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	2 cut(s)	69, 858
BlsI	GCNGC	2 cut(s)	70, 859
Bme1390I	CCNGG	5 cut(s)	170, 585, 838, 972, 981
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	167, 329, 640
BmiI	GGNNCC	3 cut(s)	483, 642, 1072
BmrFI	CCNGG	5 cut(s)	170, 585, 838, 972, 981
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	3 cut(s)	452, 597, 683
BpuEI	CTTGAG	2 cut(s)	793, 928
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	135, 584, 994, 1074
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	837, 971
Bse118I	RCCGGY	2 cut(s)	122, 484
Bse1I	ACTGG	1 cut(s)	1069
Bse3DI	GCAATG	2 cut(s)	660, 867
BseBI	CCWGG	4 cut(s)	585, 838, 972, 981
BseDI	CCNNGG	4 cut(s)	135, 584, 994, 1074
BseGI	GGATG	3 cut(s)	426, 538, 688
BseLI	CCNNNNNNNGG	2 cut(s)	837, 971
BseMI	GCAATG	2 cut(s)	660, 867
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	1069
BsePI	GCGCGC	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	1118
BseXI	GCAGC	2 cut(s)	55, 869
BseYI	CCCAGC	1 cut(s)	826
Bsh1236I	CGCG	2 cut(s)	47, 557
BshFI	GGCC	5 cut(s)	168, 641, 913, 993, 1028
BshNI	GGYRCC	2 cut(s)	481, 1070
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	123, 170, 485
BslI	CCNNNNNNNGG	2 cut(s)	837, 971
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	5 cut(s)	168, 641, 913, 993, 1028
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	391, 492, 544, 739
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	5 cut(s)	168, 641, 913, 993, 1028
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	47, 557
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	483, 642, 1072
BspPI	GGATC	2 cut(s)	500, 539
BspT107I	GGYRCC	2 cut(s)	481, 1070
BsrDI	GCAATG	2 cut(s)	660, 867
BsrFI	RCCGGY	2 cut(s)	122, 484
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	1069
BssAI	RCCGGY	2 cut(s)	122, 484
BssECI	CCNNGG	4 cut(s)	135, 584, 994, 1074
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	4 cut(s)	391, 492, 544, 739
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	1 cut(s)	1074
Bst2UI	CCWGG	4 cut(s)	585, 838, 972, 981
Bst4CI	ACNGT	3 cut(s)	158, 273, 1005
Bst6I	CTCTTC	2 cut(s)	471, 966
BstACI	GRCGYC	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	28, 47
BstDEI	CTNAG	2 cut(s)	278, 333
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	3 cut(s)	426, 538, 688
BstFNI	CGCG	2 cut(s)	47, 557
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	3 cut(s)	47, 49, 484
BstKTI	GATC	4 cut(s)	394, 495, 547, 742
BstMBI	GATC	4 cut(s)	391, 492, 544, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 51, 806, 902
BstNI	CCWGG	4 cut(s)	585, 838, 972, 981
BstSCI	CCNGG	5 cut(s)	168, 583, 836, 970, 979
BstUI	CGCG	2 cut(s)	47, 557
BstV1I	GCAGC	2 cut(s)	55, 869
BstV2I	GAAGAC	3 cut(s)	452, 597, 683
BsuRI	GGCC	5 cut(s)	168, 641, 913, 993, 1028
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	3 cut(s)	426, 538, 688
BtsIMutI	CAGTG	2 cut(s)	727, 1062
Cac8I	GCNNGC	2 cut(s)	28, 47
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	3 cut(s)	47, 49, 484
Cfr10I	RCCGGY	2 cut(s)	122, 484
Cfr13I	GGNCC	3 cut(s)	167, 329, 640
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	4 cut(s)	323, 355, 624, 1071
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	8 cut(s)	473, 599, 629, 659, 737, 783, 919, 937
CviQI	GTAC	4 cut(s)	323, 355, 624, 1071
DdeI	CTNAG	2 cut(s)	278, 333
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	4 cut(s)	393, 494, 546, 741
DpnII	GATC	4 cut(s)	391, 492, 544, 739
Eam1104I	CTCTTC	2 cut(s)	471, 966
EarI	CTCTTC	2 cut(s)	471, 966
Eco130I	CCWWGG	1 cut(s)	1074
Eco147I	AGGCCT	1 cut(s)	913
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	4 cut(s)	583, 836, 970, 979
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT22I	ATGCAT	1 cut(s)	660
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	1074
FaeI	CATG	8 cut(s)	476, 602, 632, 662, 740, 786, 922, 940
FatI	CATG	8 cut(s)	472, 598, 628, 658, 736, 782, 918, 936
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	69, 858
FokI	GGATG	3 cut(s)	433, 545, 695
Fsp4HI	GCNGC	2 cut(s)	69, 858
FspBI	CTAG	5 cut(s)	453, 833, 875, 1050, 1113
GlaI	GCGC	3 cut(s)	46, 48, 483
GluI	GCNGC	2 cut(s)	69, 858
GsaI	CCCAGC	1 cut(s)	830
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	168, 641, 913, 993, 1028
HapII	CCGG	3 cut(s)	123, 170, 485
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	3 cut(s)	47, 49, 484
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	8 cut(s)	476, 602, 632, 662, 740, 786, 922, 940
Hin6I	GCGC	3 cut(s)	45, 47, 482
HinP1I	GCGC	3 cut(s)	45, 47, 482
HincII	GTYRAC	2 cut(s)	142, 823
HindII	GTYRAC	2 cut(s)	142, 823
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	77, 230, 950, 1059
HpaII	CCGG	3 cut(s)	123, 170, 485
HphI	GGTGA	2 cut(s)	499, 685
Hpy166II	GTNNAC	6 cut(s)	142, 175, 323, 823, 977, 1008
Hpy188I	TCNGA	6 cut(s)	76, 85, 136, 152, 435, 549
Hpy188III	TCNNGA	5 cut(s)	413, 473, 772, 848, 1113
Hpy8I	GTNNAC	6 cut(s)	142, 175, 323, 823, 977, 1008
Hpy99I	CGWCG	3 cut(s)	65, 68, 747
HpyAV	CCTTC	2 cut(s)	479, 1139
HpyCH4III	ACNGT	3 cut(s)	158, 273, 1005
HpyCH4V	TGCA	7 cut(s)	112, 407, 653, 658, 843, 867, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 51, 806, 902
HpyF3I	CTNAG	2 cut(s)	278, 333
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	8 cut(s)	476, 602, 632, 662, 740, 786, 922, 940
HspAI	GCGC	3 cut(s)	45, 47, 482
KasI	GGCGCC	1 cut(s)	481
KpnI	GGTACC	1 cut(s)	1074
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 492, 544, 739
Lsp1109I	GCAGC	2 cut(s)	55, 869
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	1 cut(s)	970
MaeI	CTAG	5 cut(s)	453, 833, 875, 1050, 1113
MaeIII	GTNAC	2 cut(s)	99, 273
MalI	GATC	4 cut(s)	393, 494, 546, 741
MboI	GATC	4 cut(s)	391, 492, 544, 739
MboII	GAAGA	8 cut(s)	121, 349, 452, 488, 602, 688, 953, 1125
MluCI	AATT	6 cut(s)	251, 295, 384, 815, 1117, 1122
Mly113I	GGCGCC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	660
MseI	TTAA	3 cut(s)	308, 383, 510
MspI	CCGG	3 cut(s)	123, 170, 485
MspR9I	CCNGG	5 cut(s)	170, 585, 838, 972, 981
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	4 cut(s)	585, 838, 972, 981
MvnI	CGCG	2 cut(s)	47, 557
MwoI	GCNNNNNNNGC	4 cut(s)	32, 51, 806, 902
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	391, 492, 544, 739
NlaIII	CATG	8 cut(s)	476, 602, 632, 662, 740, 786, 922, 940
NlaIV	GGNNCC	3 cut(s)	483, 642, 1072
NsiI	ATGCAT	1 cut(s)	660
PagI	TCATGA	1 cut(s)	472
PauI	GCGCGC	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	77, 230, 950, 1059
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	70, 859
PluTI	GGCGCC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	4 cut(s)	583, 836, 970, 979
PspFI	CCCAGC	1 cut(s)	826
PspGI	CCWGG	4 cut(s)	583, 836, 970, 979
PspN4I	GGNNCC	3 cut(s)	483, 642, 1072
PspPI	GGNCC	3 cut(s)	167, 329, 640
PspPPI	RGGWCCY	1 cut(s)	329
PteI	GCGCGC	1 cut(s)	45
RsaI	GTAC	4 cut(s)	324, 356, 625, 1072
RsaNI	GTAC	4 cut(s)	323, 355, 624, 1071
SaqAI	TTAA	3 cut(s)	308, 383, 510
SatI	GCNGC	2 cut(s)	69, 858
Sau3AI	GATC	4 cut(s)	391, 492, 544, 739
Sau96I	GGNCC	3 cut(s)	167, 329, 640
ScrFI	CCNGG	5 cut(s)	170, 585, 838, 972, 981
SexAI	ACCWGGT	1 cut(s)	970
SfaNI	GCATC	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	483
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	772, 943
SmoI	CTYRAG	2 cut(s)	772, 943
Sse9I	AATT	6 cut(s)	251, 295, 384, 815, 1117, 1122
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	1 cut(s)	557
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	5 cut(s)	453, 833, 875, 1050, 1113
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	5 cut(s)	168, 583, 836, 970, 979
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	3 cut(s)	158, 273, 1005
TaqI	TCGA	2 cut(s)	233, 742
TasI	AATT	6 cut(s)	251, 295, 384, 815, 1117, 1122
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	4 cut(s)	77, 230, 950, 1059
Tru1I	TTAA	3 cut(s)	308, 383, 510
Tru9I	TTAA	3 cut(s)	308, 383, 510
TscAI	CASTG	2 cut(s)	727, 1069
TseI	GCWGC	2 cut(s)	68, 857
TspDTI	ATGAA	7 cut(s)	461, 488, 489, 810, 920, 935, 942
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	2 cut(s)	727, 1069
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	3 cut(s)	251, 295, 1117
XbaI	TCTAGA	1 cut(s)	1112
XspI	CTAG	5 cut(s)	453, 833, 875, 1050, 1113
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.