Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Forward (+)

61791137 .. 61796105

Gene Structure 4969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGATTGTTGCTCCGGTTTGCGTGCCTGCTTTGCCGGAAAAGGCGAGCAGAGCCAAGACGACGACGCTTCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCTACCAGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGGGTCTCTTGCCAAATGGGGTAGAAGTAGCTGTAAAGAAACTCTCTTTAGATTCAAGGCAAGGAGTGAGGGAATTTACCAATGAGGTAAAACTGTTACTTAGAGTTCAGCACAAGAATTTGGTAATGTTAATGGGGTGTTGTGTACAAGGACCTGAGAAGATGTTGGTTTATGAGTACCTCCCAAACAAGAGCCTTGATTACTTTATTTTTGATCAAAGCAAATCTGCATCTCTGGATTGGAAGACGAGGTTTCGGATTATAACAGGAGTGGCTAGAGGTCTTCTTTACCTTCATGAAGAGGCGCCGGTGAGGATCATTCATAGGGATATTAAAGCAAGTAATATATTGTTGGATGAGAAGCTTGATCCAAAAATCGCGGATTTTGGATTGGCAAGGCTGTTTCCTGGGGAAGACACTCATGTAAATACATTTAGGATTTCTGGTACTCATGGTTATATGGCCCCTGAATATGCAATGCATGGATATTTGTCGGTGAAGACGGATGTTTTCAGTTATGGAGTGTTGGTGTTAGAGATTGTCAGTGGGAGAAAGAACCATGATCGACAGCTTGATAGAGAAAAGGCAGACCTCTTGAGCTATACATGGAAGTTGTATGAAGCAGGGAAGGCATTGGAATTAGTTGACCCAGCCCTAGCCAGGTGCAATCGTGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAATCTTGCAGATAGGCCTGACATGAACTCTGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGGACGGTGGACGACTACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACCAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTACTCTAGAAATTCAATTTCTTATTCTTCTATTGATGAAGTACTGGGTTTTCAAAGAGCAGAGAAGATATGGACATTTTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

396

Amino Acids

44.04

Weight (kDa)

6.33

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 252	1.9e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	46 - 309	5.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	1067
AccB1I	GGYRCC	2 cut(s)	478, 1067
AccII	CGCG	1 cut(s)	554
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	497, 536
AcsI	RAATTY	3 cut(s)	248, 292, 1114
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	6 cut(s)	321, 353, 622, 1069, 1106, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	834, 968
AgsI	TTSAA	4 cut(s)	231, 986, 1119, 1157
AjnI	CCWGG	4 cut(s)	580, 833, 967, 976
AluBI	AGCT	6 cut(s)	104, 206, 538, 745, 774, 871
AluI	AGCT	6 cut(s)	104, 206, 538, 745, 774, 871
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	497, 536
AoxI	GGCC	5 cut(s)	163, 636, 908, 988, 1023
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	3 cut(s)	248, 292, 1114
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	3 cut(s)	164, 326, 637
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	496, 682
AvaII	GGWCC	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	1059, 1092
BanI	GGYRCC	2 cut(s)	478, 1067
BbsI	GAAGAC	4 cut(s)	425, 449, 594, 680
BbvI	GCAGC	1 cut(s)	866
BceAI	ACGGC	1 cut(s)	975
BciT130I	CCWGG	4 cut(s)	582, 835, 969, 978
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	5 cut(s)	450, 830, 872, 1047, 1110
BfoI	RGCGCY	1 cut(s)	482
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
BmcAI	AGTACT	2 cut(s)	1106, 1146
Bme1390I	CCNGG	5 cut(s)	167, 582, 835, 969, 978
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	164, 326, 637
BmiI	GGNNCC	3 cut(s)	480, 639, 1069
BmrFI	CCNGG	5 cut(s)	167, 582, 835, 969, 978
BmrI	ACTGGG	1 cut(s)	1157
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	1157
BpiI	GAAGAC	4 cut(s)	425, 449, 594, 680
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpuEI	CTTGAG	2 cut(s)	790, 925
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	132, 581, 991, 1071
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	834, 968
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	120, 1066, 1152
Bse3DI	GCAATG	2 cut(s)	657, 864
BseBI	CCWGG	4 cut(s)	582, 835, 969, 978
BseDI	CCNNGG	4 cut(s)	132, 581, 991, 1071
BseGI	GGATG	2 cut(s)	535, 685
BseLI	CCNNNNNNNGG	2 cut(s)	834, 968
BseMI	GCAATG	2 cut(s)	657, 864
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	120, 1066, 1152
BseRI	GAGGAG	1 cut(s)	1115
BseXI	GCAGC	1 cut(s)	866
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	5 cut(s)	165, 638, 910, 990, 1025
BshNI	GGYRCC	2 cut(s)	478, 1067
BsiSI	CCGG	4 cut(s)	15, 36, 167, 482
BslI	CCNNNNNNNGG	2 cut(s)	834, 968
BsmAI	GTCTC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	864
BsnI	GGCC	5 cut(s)	165, 638, 910, 990, 1025
Bso31I	GGTCTC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	388, 489, 541, 736
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	5 cut(s)	165, 638, 910, 990, 1025
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	480, 639, 1069
BspPI	GGATC	2 cut(s)	497, 536
BspT107I	GGYRCC	2 cut(s)	478, 1067
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	657, 864
BsrFI	RCCGGY	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	3 cut(s)	120, 1066, 1152
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	4 cut(s)	132, 581, 991, 1071
BssMI	GATC	4 cut(s)	388, 489, 541, 736
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	1071
Bst2UI	CCWGG	4 cut(s)	582, 835, 969, 978
Bst4CI	ACNGT	3 cut(s)	155, 270, 1002
Bst6I	CTCTTC	2 cut(s)	468, 963
BstACI	GRCGYC	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	24, 28, 47
BstDEI	CTNAG	2 cut(s)	275, 330
BstDSI	CCRYGG	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	535, 685
BstFNI	CGCG	1 cut(s)	554
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	391, 492, 544, 739
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	388, 489, 541, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 51, 803, 899
BstNI	CCWGG	4 cut(s)	582, 835, 969, 978
BstSCI	CCNGG	5 cut(s)	165, 580, 833, 967, 976
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	866
BstV2I	GAAGAC	4 cut(s)	425, 449, 594, 680
BsuRI	GGCC	5 cut(s)	165, 638, 910, 990, 1025
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	535, 685
BtsIMutI	CAGTG	2 cut(s)	724, 1059
Cac8I	GCNNGC	3 cut(s)	24, 28, 47
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	3 cut(s)	164, 326, 637
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	6 cut(s)	320, 352, 621, 1068, 1105, 1145
CviAII	CATG	8 cut(s)	470, 596, 626, 656, 734, 780, 916, 934
CviQI	GTAC	6 cut(s)	320, 352, 621, 1068, 1105, 1145
DdeI	CTNAG	2 cut(s)	275, 330
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	4 cut(s)	390, 491, 543, 738
DpnII	GATC	4 cut(s)	388, 489, 541, 736
Eam1104I	CTCTTC	2 cut(s)	468, 963
EarI	CTCTTC	2 cut(s)	468, 963
Eco130I	CCWWGG	1 cut(s)	1071
Eco147I	AGGCCT	1 cut(s)	910
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	4 cut(s)	580, 833, 967, 976
EcoT14I	CCWWGG	1 cut(s)	1071
EcoT22I	ATGCAT	1 cut(s)	657
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	1071
FaeI	CATG	8 cut(s)	473, 599, 629, 659, 737, 783, 919, 937
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	8 cut(s)	469, 595, 625, 655, 733, 779, 915, 933
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	855
FokI	GGATG	2 cut(s)	542, 692
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	5 cut(s)	450, 830, 872, 1047, 1110
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	855
GsaI	CCCAGC	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	5 cut(s)	165, 638, 910, 990, 1025
HapII	CCGG	4 cut(s)	15, 36, 167, 482
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	8 cut(s)	473, 599, 629, 659, 737, 783, 919, 937
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	2 cut(s)	139, 820
HindII	GTYRAC	2 cut(s)	139, 820
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	74, 227, 947, 1056
HpaII	CCGG	4 cut(s)	15, 36, 167, 482
HphI	GGTGA	2 cut(s)	496, 682
Hpy166II	GTNNAC	6 cut(s)	139, 172, 320, 820, 974, 1005
Hpy188I	TCNGA	5 cut(s)	73, 82, 133, 149, 432
Hpy188III	TCNNGA	5 cut(s)	410, 470, 769, 845, 1110
Hpy8I	GTNNAC	6 cut(s)	139, 172, 320, 820, 974, 1005
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	2 cut(s)	476, 796
HpyCH4III	ACNGT	3 cut(s)	155, 270, 1002
HpyCH4V	TGCA	7 cut(s)	109, 404, 650, 655, 840, 864, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 51, 803, 899
HpyF3I	CTNAG	2 cut(s)	275, 330
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	8 cut(s)	473, 599, 629, 659, 737, 783, 919, 937
HspAI	GCGC	1 cut(s)	479
KasI	GGCGCC	1 cut(s)	478
KpnI	GGTACC	1 cut(s)	1071
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	388, 489, 541, 736
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	866
LweI	GCATC	1 cut(s)	413
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	5 cut(s)	450, 830, 872, 1047, 1110
MaeIII	GTNAC	2 cut(s)	96, 270
MalI	GATC	4 cut(s)	390, 491, 543, 738
MboI	GATC	4 cut(s)	388, 489, 541, 736
MluCI	AATT	5 cut(s)	248, 292, 812, 1114, 1119
Mly113I	GGCGCC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	507
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	2 cut(s)	305, 507
MspI	CCGG	4 cut(s)	15, 36, 167, 482
MspR9I	CCNGG	5 cut(s)	167, 582, 835, 969, 978
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	4 cut(s)	582, 835, 969, 978
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	32, 51, 803, 899
NarI	GGCGCC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	4 cut(s)	388, 489, 541, 736
NlaIII	CATG	8 cut(s)	473, 599, 629, 659, 737, 783, 919, 937
NlaIV	GGNNCC	3 cut(s)	480, 639, 1069
NsiI	ATGCAT	1 cut(s)	657
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	910
PctI	GAATGC	1 cut(s)	864
PfeI	GAWTC	4 cut(s)	74, 227, 947, 1056
PkrI	GCNGC	1 cut(s)	856
PluTI	GGCGCC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	4 cut(s)	580, 833, 967, 976
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	4 cut(s)	580, 833, 967, 976
PspN4I	GGNNCC	3 cut(s)	480, 639, 1069
PspPI	GGNCC	3 cut(s)	164, 326, 637
PspPPI	RGGWCCY	1 cut(s)	326
RsaI	GTAC	6 cut(s)	321, 353, 622, 1069, 1106, 1146
RsaNI	GTAC	6 cut(s)	320, 352, 621, 1068, 1105, 1145
SaqAI	TTAA	2 cut(s)	305, 507
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	4 cut(s)	388, 489, 541, 736
Sau96I	GGNCC	3 cut(s)	164, 326, 637
ScaI	AGTACT	2 cut(s)	1106, 1146
ScrFI	CCNGG	5 cut(s)	167, 582, 835, 969, 978
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	1 cut(s)	413
SfoI	GGCGCC	1 cut(s)	480
SgrAI	CRCCGGYG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	769, 940
SmoI	CTYRAG	2 cut(s)	769, 940
Sse9I	AATT	5 cut(s)	248, 292, 812, 1114, 1119
SseBI	AGGCCT	1 cut(s)	910
SsiI	CCGC	1 cut(s)	554
SspDI	GGCGCC	1 cut(s)	478
SspMI	CTAG	5 cut(s)	450, 830, 872, 1047, 1110
StuI	AGGCCT	1 cut(s)	910
StyD4I	CCNGG	5 cut(s)	165, 580, 833, 967, 976
StyI	CCWWGG	1 cut(s)	1071
TaaI	ACNGT	3 cut(s)	155, 270, 1002
TaqI	TCGA	1 cut(s)	739
TasI	AATT	5 cut(s)	248, 292, 812, 1114, 1119
TatI	WGTACW	3 cut(s)	319, 1104, 1144
TfiI	GAWTC	4 cut(s)	74, 227, 947, 1056
Tru1I	TTAA	2 cut(s)	305, 507
Tru9I	TTAA	2 cut(s)	305, 507
TscAI	CASTG	2 cut(s)	724, 1066
TseI	GCWGC	1 cut(s)	854
TspDTI	ATGAA	8 cut(s)	458, 485, 486, 807, 917, 932, 939, 1155
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	724, 1066
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	3 cut(s)	248, 292, 1114
XbaI	TCTAGA	1 cut(s)	1109
XspI	CTAG	5 cut(s)	450, 830, 872, 1047, 1110
ZrmI	AGTACT	2 cut(s)	1106, 1146
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.