Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

5358580 .. 5361296

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGGAAAGAATTTAGAGCACCGACATCTATTTGTATCAATATAAATAAACCACTGAAAAACATCAACCAAGACGACGACGCCGTTCCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCCACCAGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGGGTCTGTTGCCAAATGGGGTAGAAGTAGCTATAAAGAAACTCTCTTTAGATTCGAGGCAAGGAGTGAGGGAATTTACCAATGAGGTAAAACTGTTACTTAGAGTTCAGCACAAGAATTTGGTAATGTTAATGGGGTGTTGTGTACAAGGACCTGAGAAGATGTTGGTTTATGAGTACCTCCCAAACAAGAGCCTTGATTACTTTATTTTTGATCAAAGCAAATCTGCATCTCTGGATTGGATGACGAGGTTTCGGATTATAACAGGAGTGGCTAGAGGTCTTCTTTACCTTCATGAAGAGGCGCCGGTGAGGATCATTCATAGGGATATTAAAGCAAGTAATATATTGTTGGATGAGAAGCTTGATCCGAAAATCGCGGATTTTGGATTGGCAAGGCTGTTTCCTGGGGAAGACACTCATGTAAATACATTTAGGATTTCTGGTACTCATGGTTATATGGCCCCTGAATATGCAATGCATGGATATTTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTATTGGTGTTAGAGATTGTCAGTGGGAGAAAGAACCATGATCGACAGCTTGATAGAGAAAAGGCAGACCTCTTGAGCTATACATGGAAGTTGTATGAAGCAGGAAAGGCATTGGAATTAGTTGACCCAGCCCTAGCCAGGTGCAATCGTGATGAGGTAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAATCTTGCAGATAGGCCTGACATGAACTCAGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGGACGGTGGACTACTACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACCAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTATTCTAGAAATTCAATTTCTTATTCTTCTATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

389

Amino Acids

43.39

Weight (kDa)

7.11

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 257	4.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 315	9.5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	1085
AccB1I	GGYRCC	2 cut(s)	496, 1085
AccII	CGCG	1 cut(s)	572
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	2 cut(s)	515, 554
AcsI	RAATTY	4 cut(s)	11, 266, 310, 1132
AcyI	GRCGYC	2 cut(s)	81, 497
AfaI	GTAC	4 cut(s)	339, 371, 640, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	852, 986
AgsI	TTSAA	2 cut(s)	1004, 1137
AjnI	CCWGG	4 cut(s)	598, 851, 985, 994
AluBI	AGCT	6 cut(s)	122, 224, 556, 763, 792, 889
AluI	AGCT	6 cut(s)	122, 224, 556, 763, 792, 889
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	515, 554
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	5 cut(s)	181, 654, 926, 1006, 1041
ApoI	RAATTY	4 cut(s)	11, 266, 310, 1132
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp718I	GGTACC	1 cut(s)	1085
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	3 cut(s)	182, 344, 655
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BanI	GGYRCC	2 cut(s)	496, 1085
BbsI	GAAGAC	3 cut(s)	467, 612, 698
Bbv12I	GWGCWC	1 cut(s)	22
BceAI	ACGGC	2 cut(s)	68, 993
BciT130I	CCWGG	4 cut(s)	600, 853, 987, 996
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	5 cut(s)	468, 848, 890, 1065, 1128
BfoI	RGCGCY	1 cut(s)	500
Bme1390I	CCNGG	5 cut(s)	185, 600, 853, 987, 996
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	182, 344, 655
BmiI	GGNNCC	3 cut(s)	498, 657, 1087
BmrFI	CCNGG	5 cut(s)	185, 600, 853, 987, 996
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	3 cut(s)	467, 612, 698
BpuEI	CTTGAG	2 cut(s)	808, 943
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	81, 497
BsaJI	CCNNGG	4 cut(s)	150, 599, 1009, 1089
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	852, 986
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	138, 1084
Bse3DI	GCAATG	2 cut(s)	675, 882
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	4 cut(s)	600, 853, 987, 996
BseDI	CCNNGG	4 cut(s)	150, 599, 1009, 1089
BseGI	GGATG	3 cut(s)	441, 553, 703
BseLI	CCNNNNNNNGG	2 cut(s)	852, 986
BseMI	GCAATG	2 cut(s)	675, 882
BseMII	CTCAG	2 cut(s)	339, 954
BseNI	ACTGG	2 cut(s)	138, 1084
BseRI	GAGGAG	1 cut(s)	1133
BseYI	CCCAGC	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	5 cut(s)	183, 656, 928, 1008, 1043
BshNI	GGYRCC	2 cut(s)	496, 1085
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	89, 185, 500
BslI	CCNNNNNNNGG	2 cut(s)	852, 986
BsmI	GAATGC	1 cut(s)	882
BsnI	GGCC	5 cut(s)	183, 656, 928, 1008, 1043
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	406, 507, 559, 754
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	5 cut(s)	183, 656, 928, 1008, 1043
BspCNI	CTCAG	2 cut(s)	340, 953
BspEI	TCCGGA	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	498, 657, 1087
BspPI	GGATC	2 cut(s)	515, 554
BspT107I	GGYRCC	2 cut(s)	496, 1085
BsrDI	GCAATG	2 cut(s)	675, 882
BsrFI	RCCGGY	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	138, 1084
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	4 cut(s)	150, 599, 1009, 1089
BssMI	GATC	4 cut(s)	406, 507, 559, 754
BssNI	GRCGYC	2 cut(s)	81, 497
BssT1I	CCWWGG	1 cut(s)	1089
Bst2UI	CCWGG	4 cut(s)	600, 853, 987, 996
Bst4CI	ACNGT	3 cut(s)	173, 288, 1020
Bst6I	CTCTTC	2 cut(s)	486, 981
BstACI	GRCGYC	2 cut(s)	81, 497
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	293, 348, 940
BstDSI	CCRYGG	1 cut(s)	1009
BstF5I	GGATG	3 cut(s)	441, 553, 703
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	409, 510, 562, 757
BstMBI	GATC	4 cut(s)	406, 507, 559, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	821, 917
BstNI	CCWGG	4 cut(s)	600, 853, 987, 996
BstSCI	CCNGG	5 cut(s)	183, 598, 851, 985, 994
BstUI	CGCG	1 cut(s)	572
BstV2I	GAAGAC	3 cut(s)	467, 612, 698
BsuRI	GGCC	5 cut(s)	183, 656, 928, 1008, 1043
BtgI	CCRYGG	1 cut(s)	1009
BtsCI	GGATG	3 cut(s)	441, 553, 703
BtsIMutI	CAGTG	4 cut(s)	53, 693, 742, 1077
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	182, 344, 655
CseI	GACGC	1 cut(s)	89
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	4 cut(s)	338, 370, 639, 1086
CviAII	CATG	8 cut(s)	488, 614, 644, 674, 752, 798, 934, 952
CviQI	GTAC	4 cut(s)	338, 370, 639, 1086
DdeI	CTNAG	3 cut(s)	293, 348, 940
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	4 cut(s)	408, 509, 561, 756
DpnII	GATC	4 cut(s)	406, 507, 559, 754
Eam1104I	CTCTTC	2 cut(s)	486, 981
EarI	CTCTTC	2 cut(s)	486, 981
Eco130I	CCWWGG	1 cut(s)	1089
Eco147I	AGGCCT	1 cut(s)	928
Eco47I	GGWCC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	4 cut(s)	598, 851, 985, 994
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT22I	ATGCAT	1 cut(s)	675
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	1089
FaeI	CATG	8 cut(s)	491, 617, 647, 677, 755, 801, 937, 955
FatI	CATG	8 cut(s)	487, 613, 643, 673, 751, 797, 933, 951
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	3 cut(s)	448, 560, 710
FspBI	CTAG	5 cut(s)	468, 848, 890, 1065, 1128
GlaI	GCGC	1 cut(s)	498
GsaI	CCCAGC	1 cut(s)	845
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	183, 656, 928, 1008, 1043
HapII	CCGG	3 cut(s)	89, 185, 500
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	81, 497
Hin1II	CATG	8 cut(s)	491, 617, 647, 677, 755, 801, 937, 955
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	2 cut(s)	157, 838
HindII	GTYRAC	2 cut(s)	157, 838
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	92, 245, 965, 1074
HpaII	CCGG	3 cut(s)	89, 185, 500
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	6 cut(s)	157, 190, 338, 838, 992, 1023
Hpy188I	TCNGA	5 cut(s)	100, 151, 167, 450, 564
Hpy188III	TCNNGA	6 cut(s)	89, 428, 488, 787, 863, 1128
Hpy8I	GTNNAC	6 cut(s)	157, 190, 338, 838, 992, 1023
Hpy99I	CGWCG	2 cut(s)	80, 83
HpyAV	CCTTC	2 cut(s)	494, 1154
HpyCH4III	ACNGT	3 cut(s)	173, 288, 1020
HpyCH4V	TGCA	7 cut(s)	127, 422, 668, 673, 858, 882, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	821, 917
HpyF3I	CTNAG	3 cut(s)	293, 348, 940
Hsp92I	GRCGYC	2 cut(s)	81, 497
Hsp92II	CATG	8 cut(s)	491, 617, 647, 677, 755, 801, 937, 955
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	1089
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	406, 507, 559, 754
LweI	GCATC	1 cut(s)	431
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	5 cut(s)	468, 848, 890, 1065, 1128
MaeIII	GTNAC	2 cut(s)	114, 288
MalI	GATC	4 cut(s)	408, 509, 561, 756
MboI	GATC	4 cut(s)	406, 507, 559, 754
MboII	GAAGA	8 cut(s)	136, 364, 467, 503, 617, 703, 968, 1140
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	6 cut(s)	11, 266, 310, 830, 1132, 1137
Mly113I	GGCGCC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	1 cut(s)	675
MroI	TCCGGA	1 cut(s)	88
MseI	TTAA	2 cut(s)	323, 525
MspI	CCGG	3 cut(s)	89, 185, 500
MspR9I	CCNGG	5 cut(s)	185, 600, 853, 987, 996
Mva1269I	GAATGC	1 cut(s)	882
MvaI	CCWGG	4 cut(s)	600, 853, 987, 996
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	821, 917
NarI	GGCGCC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	406, 507, 559, 754
NlaIII	CATG	8 cut(s)	491, 617, 647, 677, 755, 801, 937, 955
NlaIV	GGNNCC	3 cut(s)	498, 657, 1087
NsiI	ATGCAT	1 cut(s)	675
PagI	TCATGA	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	882
PfeI	GAWTC	4 cut(s)	92, 245, 965, 1074
PluTI	GGCGCC	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	4 cut(s)	598, 851, 985, 994
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	4 cut(s)	598, 851, 985, 994
PspN4I	GGNNCC	3 cut(s)	498, 657, 1087
PspPI	GGNCC	3 cut(s)	182, 344, 655
PspPPI	RGGWCCY	1 cut(s)	344
RsaI	GTAC	4 cut(s)	339, 371, 640, 1087
RsaNI	GTAC	4 cut(s)	338, 370, 639, 1086
SaqAI	TTAA	2 cut(s)	323, 525
Sau3AI	GATC	4 cut(s)	406, 507, 559, 754
Sau96I	GGNCC	3 cut(s)	182, 344, 655
ScrFI	CCNGG	5 cut(s)	185, 600, 853, 987, 996
SduI	GDGCHC	1 cut(s)	22
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	1 cut(s)	431
SfoI	GGCGCC	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	787, 958
SmoI	CTYRAG	2 cut(s)	787, 958
Sse9I	AATT	6 cut(s)	11, 266, 310, 830, 1132, 1137
SseBI	AGGCCT	1 cut(s)	928
SsiI	CCGC	1 cut(s)	572
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	5 cut(s)	468, 848, 890, 1065, 1128
StuI	AGGCCT	1 cut(s)	928
StyD4I	CCNGG	5 cut(s)	183, 598, 851, 985, 994
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	3 cut(s)	173, 288, 1020
TaqI	TCGA	2 cut(s)	248, 757
TasI	AATT	6 cut(s)	11, 266, 310, 830, 1132, 1137
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	4 cut(s)	92, 245, 965, 1074
Tru1I	TTAA	2 cut(s)	323, 525
Tru9I	TTAA	2 cut(s)	323, 525
TscAI	CASTG	4 cut(s)	60, 693, 742, 1084
TspDTI	ATGAA	7 cut(s)	476, 503, 504, 825, 935, 950, 957
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	4 cut(s)	60, 693, 742, 1084
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	4 cut(s)	11, 266, 310, 1132
XbaI	TCTAGA	1 cut(s)	1127
XspI	CTAG	5 cut(s)	468, 848, 890, 1065, 1128
Zsp2I	ATGCAT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.