Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010190.1

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Forward (+)

3727 .. 5839

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010190.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

atgaaggaagttccatcacgaacaatacaaagaccacatggaaaagacagacgagtcaagcactacttatttagttgtgaggaaaaagtcaccaccgaaatccagctcctcctctccccacaacggcgtcgtattgtgacgagagtacaatccagtgaggcagctctcatggattgttgctctggtttgtgtgcctgctttgcccgaaaaggcgcgcagagccaagacgacgacgctgcttcggaatcgtctgacctgttttttgagttacaagctctgcaaatcgccaccggtttcttctccgaggtcaacaaactcggacacggtggcttcggcccggtttacaagggtctgttgccaaatggagtagaagtagctataaagaaactctctttagattcgaggcaaggagtgagggaatttaccaatgaggtaaaactgttacttagagttcagcacaagaatttggtaatgttaatggggtgttgtgtacaaggacctgagaagatgttggtttatgagtacctcccaaacaagagccttgattacttaatttttgatcaaagcaaatctgcatctctggattggatgacgaggtttcggattataacaggagtggctagaggtcttctttaccttcatgaagaggcgccggtgaggatcattcatagggatattaaagcaagtaatatattgttggatgagaagcttgatccgaaaatcgcggattttggattggcaaggctgtttcctggggaagacactcatgtaaatacatttaggatttctggtactcatggttatatggcccctgaatatgcaatgcatggatatttgtcggtgaagacggatgttttcagttatggagtattggtgttagagattgtcagtgggagaaagaaccatgatcgacagcttgatagagaaaaggcagacctcttgagctatacatggaagttgtatgaagcaggaaaggcattggaattagttgacccagccctagccaggtgcaatcgtgatgaggcagcaatgtgcattcagctagggcttttatgttgtcaggcaaatcttgcagataggcctgacatgaactctgttcatctcatgttctcaagcgattcatttactcttcccagaccaggtaaacctggacttcaaggccgtggaggacggtggactactacctctacttcggcctttaccaacaatactaatgctagtagtggattcactggtggtaccaaggtttctgggggcagtagttttgttgaggagtattctagaaattcaatttcttattcttctattgatgaaggtaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

440

Amino Acids

48.99

Weight (kDa)

8.21

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AasI	GACNNNNNNGTC	1 cut(s)	53
Acc65I	GGTACC	1 cut(s)	1238
AccB1I	GGYRCC	2 cut(s)	649, 1238
AccII	CGCG	2 cut(s)	215, 725
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	2 cut(s)	668, 707
AcsI	RAATTY	3 cut(s)	419, 463, 1285
AcyI	GRCGYC	2 cut(s)	127, 650
AfaI	GTAC	5 cut(s)	147, 492, 524, 793, 1240
AfiI	CCNNNNNNNGG	3 cut(s)	123, 1005, 1139
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	1157, 1290
AjnI	CCWGG	4 cut(s)	751, 1004, 1138, 1147
AluBI	AGCT	8 cut(s)	106, 164, 275, 377, 709, 916, 945, 1042
AluI	AGCT	8 cut(s)	106, 164, 275, 377, 709, 916, 945, 1042
AlwI	GGATC	2 cut(s)	668, 707
AoxI	GGCC	5 cut(s)	334, 807, 1079, 1159, 1194
ApeKI	GCWGC	3 cut(s)	161, 236, 1025
ApoI	RAATTY	3 cut(s)	419, 463, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AsiGI	ACCGGT	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	1238
AspLEI	GCGC	3 cut(s)	215, 217, 652
AspS9I	GGNCC	3 cut(s)	335, 497, 808
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	3 cut(s)	82, 667, 853
AvaII	GGWCC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	1230, 1263
BanI	GGYRCC	2 cut(s)	649, 1238
BbsI	GAAGAC	3 cut(s)	620, 765, 851
BbvI	GCAGC	3 cut(s)	173, 223, 1037
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	2 cut(s)	140, 1146
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	4 cut(s)	753, 1006, 1140, 1149
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	338
BfaI	CTAG	5 cut(s)	621, 1001, 1043, 1218, 1281
BfoI	RGCGCY	1 cut(s)	653
BisI	GCNGC	3 cut(s)	162, 237, 1026
BlsI	GCNGC	3 cut(s)	163, 238, 1027
Bme1390I	CCNGG	5 cut(s)	338, 753, 1006, 1140, 1149
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	3 cut(s)	335, 497, 808
BmiI	GGNNCC	3 cut(s)	651, 810, 1240
BmrFI	CCNGG	5 cut(s)	338, 753, 1006, 1140, 1149
BmsI	GCATC	1 cut(s)	584
BpiI	GAAGAC	3 cut(s)	620, 765, 851
BpuEI	CTTGAG	2 cut(s)	961, 1096
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	127, 650
BsaJI	CCNNGG	4 cut(s)	303, 752, 1162, 1242
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 1005, 1139
Bse118I	RCCGGY	2 cut(s)	290, 652
Bse1I	ACTGG	2 cut(s)	153, 1237
Bse3DI	GCAATG	2 cut(s)	828, 1035
BseBI	CCWGG	4 cut(s)	753, 1006, 1140, 1149
BseDI	CCNNGG	4 cut(s)	303, 752, 1162, 1242
BseGI	GGATG	3 cut(s)	594, 706, 856
BseLI	CCNNNNNNNGG	3 cut(s)	123, 1005, 1139
BseMI	GCAATG	2 cut(s)	828, 1035
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	153, 1237
BsePI	GCGCGC	1 cut(s)	213
BseRI	GAGGAG	3 cut(s)	98, 101, 1286
BseXI	GCAGC	3 cut(s)	173, 223, 1037
BseYI	CCCAGC	1 cut(s)	994
Bsh1236I	CGCG	2 cut(s)	215, 725
BshFI	GGCC	5 cut(s)	336, 809, 1081, 1161, 1196
BshNI	GGYRCC	2 cut(s)	649, 1238
BshTI	ACCGGT	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	291, 338, 653
BslI	CCNNNNNNNGG	3 cut(s)	123, 1005, 1139
BsmI	GAATGC	1 cut(s)	1035
BsnI	GGCC	5 cut(s)	336, 809, 1081, 1161, 1196
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	559, 660, 712, 907
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	5 cut(s)	336, 809, 1081, 1161, 1196
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	2 cut(s)	215, 725
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	651, 810, 1240
BspPI	GGATC	2 cut(s)	668, 707
BspT107I	GGYRCC	2 cut(s)	649, 1238
BsrDI	GCAATG	2 cut(s)	828, 1035
BsrFI	RCCGGY	2 cut(s)	290, 652
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	153, 1237
BssAI	RCCGGY	2 cut(s)	290, 652
BssECI	CCNNGG	4 cut(s)	303, 752, 1162, 1242
BssHII	GCGCGC	1 cut(s)	213
BssMI	GATC	4 cut(s)	559, 660, 712, 907
BssNI	GRCGYC	2 cut(s)	127, 650
BssT1I	CCWWGG	1 cut(s)	1242
Bst2UI	CCWGG	4 cut(s)	753, 1006, 1140, 1149
Bst4CI	ACNGT	3 cut(s)	326, 441, 1173
Bst6I	CTCTTC	2 cut(s)	639, 1134
BstACI	GRCGYC	2 cut(s)	127, 650
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	196, 215
BstDEI	CTNAG	2 cut(s)	446, 501
BstDSI	CCRYGG	1 cut(s)	1162
BstF5I	GGATG	3 cut(s)	594, 706, 856
BstFNI	CGCG	2 cut(s)	215, 725
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	3 cut(s)	215, 217, 652
BstKTI	GATC	4 cut(s)	562, 663, 715, 910
BstMBI	GATC	4 cut(s)	559, 660, 712, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 219, 974, 1070
BstNI	CCWGG	4 cut(s)	753, 1006, 1140, 1149
BstSCI	CCNGG	5 cut(s)	336, 751, 1004, 1138, 1147
BstUI	CGCG	2 cut(s)	215, 725
BstV1I	GCAGC	3 cut(s)	173, 223, 1037
BstV2I	GAAGAC	3 cut(s)	620, 765, 851
BsuRI	GGCC	5 cut(s)	336, 809, 1081, 1161, 1196
BtgI	CCRYGG	1 cut(s)	1162
BtsCI	GGATG	3 cut(s)	594, 706, 856
BtsIMutI	CAGTG	3 cut(s)	160, 895, 1230
Cac8I	GCNNGC	2 cut(s)	196, 215
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	3 cut(s)	215, 217, 652
Cfr10I	RCCGGY	2 cut(s)	290, 652
Cfr13I	GGNCC	3 cut(s)	335, 497, 808
CseI	GACGC	2 cut(s)	116, 242
CsiI	ACCWGGT	1 cut(s)	1138
Csp6I	GTAC	5 cut(s)	146, 491, 523, 792, 1239
CspAI	ACCGGT	1 cut(s)	290
CviQI	GTAC	5 cut(s)	146, 491, 523, 792, 1239
DdeI	CTNAG	2 cut(s)	446, 501
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	4 cut(s)	561, 662, 714, 909
DpnII	GATC	4 cut(s)	559, 660, 712, 907
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	639, 1134
EarI	CTCTTC	2 cut(s)	639, 1134
Eco130I	CCWWGG	1 cut(s)	1242
Eco147I	AGGCCT	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	4 cut(s)	751, 1004, 1138, 1147
EcoT14I	CCWWGG	1 cut(s)	1242
EcoT22I	ATGCAT	1 cut(s)	828
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	1242
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	3 cut(s)	162, 237, 1026
FokI	GGATG	3 cut(s)	601, 713, 863
Fsp4HI	GCNGC	3 cut(s)	162, 237, 1026
FspBI	CTAG	5 cut(s)	621, 1001, 1043, 1218, 1281
GlaI	GCGC	3 cut(s)	214, 216, 651
GluI	GCNGC	3 cut(s)	162, 237, 1026
GsaI	CCCAGC	1 cut(s)	998
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	5 cut(s)	336, 809, 1081, 1161, 1196
HapII	CCGG	3 cut(s)	291, 338, 653
HgaI	GACGC	2 cut(s)	116, 242
HhaI	GCGC	3 cut(s)	215, 217, 652
Hin1I	GRCGYC	2 cut(s)	127, 650
Hin6I	GCGC	3 cut(s)	213, 215, 650
HinP1I	GCGC	3 cut(s)	213, 215, 650
HincII	GTYRAC	2 cut(s)	310, 991
HindII	GTYRAC	2 cut(s)	310, 991
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	5 cut(s)	54, 245, 398, 1118, 1227
HpaII	CCGG	3 cut(s)	291, 338, 653
HphI	GGTGA	3 cut(s)	82, 667, 853
Hpy166II	GTNNAC	6 cut(s)	310, 343, 491, 991, 1145, 1176
Hpy188I	TCNGA	6 cut(s)	244, 253, 304, 320, 603, 717
Hpy188III	TCNNGA	6 cut(s)	18, 581, 641, 940, 1016, 1281
Hpy8I	GTNNAC	6 cut(s)	310, 343, 491, 991, 1145, 1176
Hpy99I	CGWCG	3 cut(s)	132, 233, 236
HpyAV	CCTTC	2 cut(s)	647, 1307
HpyCH4III	ACNGT	3 cut(s)	326, 441, 1173
HpyCH4V	TGCA	7 cut(s)	280, 575, 821, 826, 1011, 1035, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 219, 974, 1070
HpyF3I	CTNAG	2 cut(s)	446, 501
Hsp92I	GRCGYC	2 cut(s)	127, 650
HspAI	GCGC	3 cut(s)	213, 215, 650
KasI	GGCGCC	1 cut(s)	649
KpnI	GGTACC	1 cut(s)	1242
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	559, 660, 712, 907
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	173, 223, 1037
LweI	GCATC	1 cut(s)	584
MabI	ACCWGGT	1 cut(s)	1138
MaeI	CTAG	5 cut(s)	621, 1001, 1043, 1218, 1281
MaeIII	GTNAC	4 cut(s)	88, 136, 267, 441
MalI	GATC	4 cut(s)	561, 662, 714, 909
MboI	GATC	4 cut(s)	559, 660, 712, 907
MboII	GAAGA	8 cut(s)	289, 517, 620, 656, 770, 856, 1121, 1293
MluCI	AATT	6 cut(s)	419, 463, 552, 983, 1285, 1290
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	828
MseI	TTAA	3 cut(s)	476, 551, 678
MspI	CCGG	3 cut(s)	291, 338, 653
MspR9I	CCNGG	5 cut(s)	338, 753, 1006, 1140, 1149
Mva1269I	GAATGC	1 cut(s)	1035
MvaI	CCWGG	4 cut(s)	753, 1006, 1140, 1149
MvnI	CGCG	2 cut(s)	215, 725
MwoI	GCNNNNNNNGC	4 cut(s)	200, 219, 974, 1070
NarI	GGCGCC	1 cut(s)	650
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	559, 660, 712, 907
NlaIV	GGNNCC	3 cut(s)	651, 810, 1240
NmuCI	GTSAC	2 cut(s)	88, 136
NsiI	ATGCAT	1 cut(s)	828
PagI	TCATGA	1 cut(s)	640
PauI	GCGCGC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	1035
PfeI	GAWTC	4 cut(s)	245, 398, 1118, 1227
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	163, 238, 1027
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	4 cut(s)	751, 1004, 1138, 1147
PspFI	CCCAGC	1 cut(s)	994
PspGI	CCWGG	4 cut(s)	751, 1004, 1138, 1147
PspN4I	GGNNCC	3 cut(s)	651, 810, 1240
PspPI	GGNCC	3 cut(s)	335, 497, 808
PspPPI	RGGWCCY	1 cut(s)	497
PteI	GCGCGC	1 cut(s)	213
RsaI	GTAC	5 cut(s)	147, 492, 524, 793, 1240
RsaNI	GTAC	5 cut(s)	146, 491, 523, 792, 1239
SaqAI	TTAA	3 cut(s)	476, 551, 678
SatI	GCNGC	3 cut(s)	162, 237, 1026
Sau3AI	GATC	4 cut(s)	559, 660, 712, 907
Sau96I	GGNCC	3 cut(s)	335, 497, 808
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	5 cut(s)	338, 753, 1006, 1140, 1149
SexAI	ACCWGGT	1 cut(s)	1138
SfaNI	GCATC	1 cut(s)	584
SfoI	GGCGCC	1 cut(s)	651
SgrAI	CRCCGGYG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	940, 1111
SmoI	CTYRAG	2 cut(s)	940, 1111
Sse9I	AATT	6 cut(s)	419, 463, 552, 983, 1285, 1290
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	1 cut(s)	725
SspDI	GGCGCC	1 cut(s)	649
SspMI	CTAG	5 cut(s)	621, 1001, 1043, 1218, 1281
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	5 cut(s)	336, 751, 1004, 1138, 1147
StyI	CCWWGG	1 cut(s)	1242
TaaI	ACNGT	3 cut(s)	326, 441, 1173
TaqI	TCGA	2 cut(s)	401, 910
TasI	AATT	6 cut(s)	419, 463, 552, 983, 1285, 1290
TatI	WGTACW	2 cut(s)	145, 490
TfiI	GAWTC	4 cut(s)	245, 398, 1118, 1227
Tru1I	TTAA	3 cut(s)	476, 551, 678
Tru9I	TTAA	3 cut(s)	476, 551, 678
TscAI	CASTG	3 cut(s)	160, 895, 1237
TseFI	GTSAC	2 cut(s)	88, 136
TseI	GCWGC	3 cut(s)	161, 236, 1025
Tsp45I	GTSAC	2 cut(s)	88, 136
TspDTI	ATGAA	8 cut(s)	17, 629, 656, 657, 978, 1088, 1103, 1110
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	3 cut(s)	160, 895, 1237
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	3 cut(s)	419, 463, 1285
XbaI	TCTAGA	1 cut(s)	1280
XspI	CTAG	5 cut(s)	621, 1001, 1043, 1218, 1281
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.