Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

5425583 .. 5427509

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATTGTTGCTCCAGTTTGTGTGCCTGCTTTGCCGGAAAAGGCGCACAGAGCCAAGACGACGACGCCTCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCCACCGGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGACATGGAAGTTGTATGAAGCAGGAAAGGCATTGGAATTAGTTGACCCAGCCCTACCCAGGTGCAATCGTGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAGTCTTGCAGATAGGCCTGACATGAACTCTGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGGACGGTGGACTACCACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACCAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTATTCTAGAAATTCAATTTCTTATTCTTCCATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

183

Amino Acids

19.5

Weight (kDa)

4.99

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	234, 368
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	386, 519
AjnI	CCWGG	3 cut(s)	233, 367, 376
AluBI	AGCT	2 cut(s)	104, 271
AluI	AGCT	2 cut(s)	104, 271
AoxI	GGCC	4 cut(s)	163, 308, 388, 423
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AsiGI	ACCGGT	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	1 cut(s)	467
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	235, 369, 378
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	3 cut(s)	272, 447, 510
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	167, 235, 369, 378
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	4 cut(s)	167, 235, 369, 378
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	69, 132, 233, 391, 471
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 368
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	15, 466
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	235, 369, 378
BseDI	CCNNGG	5 cut(s)	69, 132, 233, 391, 471
BseLI	CCNNNNNNNGG	2 cut(s)	234, 368
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	15, 466
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	4 cut(s)	165, 310, 390, 425
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	36, 120, 167
BslI	CCNNNNNNNGG	2 cut(s)	234, 368
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	4 cut(s)	165, 310, 390, 425
BspANI	GGCC	4 cut(s)	165, 310, 390, 425
BspLI	GGNNCC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	15, 466
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	5 cut(s)	69, 132, 233, 391, 471
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	235, 369, 378
Bst4CI	ACNGT	2 cut(s)	155, 402
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 51, 203, 299
BstNI	CCWGG	3 cut(s)	235, 369, 378
BstSCI	CCNGG	4 cut(s)	165, 233, 367, 376
BstV1I	GCAGC	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	165, 310, 390, 425
BtgI	CCRYGG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	468
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	3 cut(s)	180, 316, 334
CviQI	GTAC	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	233, 367, 376
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	183, 319, 337
FaiI	YATR	5 cut(s)	181, 192, 283, 317, 335
FatI	CATG	3 cut(s)	179, 315, 333
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	272, 447, 510
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	4 cut(s)	165, 310, 390, 425
HapII	CCGG	3 cut(s)	36, 120, 167
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	183, 319, 337
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	139, 220
HindII	GTYRAC	2 cut(s)	139, 220
HinfI	GANTC	3 cut(s)	74, 347, 456
HpaII	CCGG	3 cut(s)	36, 120, 167
Hpy166II	GTNNAC	5 cut(s)	139, 172, 220, 374, 405
Hpy188I	TCNGA	4 cut(s)	73, 82, 133, 149
Hpy188III	TCNNGA	2 cut(s)	245, 510
Hpy8I	GTNNAC	5 cut(s)	139, 172, 220, 374, 405
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	2 cut(s)	155, 402
HpyCH4V	TGCA	4 cut(s)	109, 240, 264, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 51, 203, 299
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	183, 319, 337
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	266
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	3 cut(s)	272, 447, 510
MaeIII	GTNAC	1 cut(s)	96
MboII	GAAGA	3 cut(s)	118, 350, 522
MluCI	AATT	3 cut(s)	212, 514, 519
MnlI	CCTC	6 cut(s)	79, 127, 244, 389, 424, 493
MspI	CCGG	3 cut(s)	36, 120, 167
MspR9I	CCNGG	4 cut(s)	167, 235, 369, 378
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	3 cut(s)	235, 369, 378
MwoI	GCNNNNNNNGC	4 cut(s)	32, 51, 203, 299
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	3 cut(s)	183, 319, 337
NlaIV	GGNNCC	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	74, 347, 456
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	233, 367, 376
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	233, 367, 376
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SatI	GCNGC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	167, 235, 369, 378
SexAI	ACCWGGT	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	212, 514, 519
SseBI	AGGCCT	1 cut(s)	310
SspMI	CTAG	3 cut(s)	272, 447, 510
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	4 cut(s)	165, 233, 367, 376
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	155, 402
TasI	AATT	3 cut(s)	212, 514, 519
TfiI	GAWTC	3 cut(s)	74, 347, 456
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	207, 317, 332, 339
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	514
XbaI	TCTAGA	1 cut(s)	509
XspI	CTAG	3 cut(s)	272, 447, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.