Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

34970128 .. 34972376

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1217600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGACTTTGCTCCAGTTTCTGCGTCTGCCTGGAGAGGCTGAGAGCCGGCAGACCCGCCGCTGCAGCCGGCTCTGACGATGCCGAGGACGGAATTGACTCGTTCAACCTCTTCTTCGACCTCCAGGAGCTGCAAATCGCCACCGGTTTCTTCTCCGAGCTCAACAAACTCGGCCACGGAGGATTCGGCCCCGTTTACAAGGGCTTGATGCCAAATTGTCAAGAAATAGCTGTAAAGAAGCTTTCGTTAGATTCCCCGCAAGGAGCTACAGAATTCACCAACGAGGTGAAACTGTTACTGAGAGTTCAACACAAGAATTTGGTCACGTTATTGGGATGTTGTGTAGAAGGGCCTGAGAAGATGTTGGTTTACGAGTATCTCCCAAACAAAAGCCTCGATTACTTTCTTTTCGATAAACAGAAATCTGGAAGCTTGGATTGGACGACAAGGTTTCAGGTGATTAAGGGTGTGGCAAGAGGTCTTCTCTACCTTCATGAAGAGACCCCGGAAAGAATCATTCATAGGGACATCAAAGCTAGTAATATATTACTAGATGAGAAGCTGAACCCGAAAATCTCGGATTGTGGCTTGGCAAGACTCTTTCCTGGGGAGGACACTCATATCAATACATTTCGGATTTCTGGCACTCATGGTTATATGGCTCCTGAATATGCAATGCATGGATATTTATCGGTGAAGACGGATGTTTTCAGTTACGGAGTCTTGGTGTTAGAGATCATCAGTGGGAGAAAGAACCACGATGGGCAGCTTGAAAGAGAAAAGGCCGACCTCTTGAGCTATGTATGTTATGTGGAAAGTTTTACATGGATGCTGCATCAAGGAGGGAAAGCATTGGACTTGGTTGACCCAAACCTGGCCAGGTGCAATCCCGTCGAGGCAGCAATGTGCGTTCAGCTAGGAATTCTATGTTGTCAAGCAAGTGTTGCAGAAAGGCCGGACATGAAATCCATCTATCTCATGTTATCGAGCGATTCATTTACTTTGCCGAGGCCAGGTAAACCTGGATTCCAGGGCCGTAGAGGATGTTGGACAACCACCCCTACCTCCGCTTTTACCAACAATACTAATGCCAGTAGTCGCGGGAGCAGTTTTGGTGAGGAACATTCTAGAAATTGGATGTCTCATTCTTCTATCGACGAAGGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.19

Weight (kDa)

6.02

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 260	9.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 258	2.8e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1101
AciI	CCGC	5 cut(s)	57, 60, 257, 1068, 1101
AcoI	YGGCCR	2 cut(s)	172, 876
AcsI	RAATTY	3 cut(s)	272, 316, 921
AfiI	CCNNNNNNNGG	2 cut(s)	874, 1013
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	106, 308, 773
AjnI	CCWGG	8 cut(s)	30, 123, 604, 873, 878, 1012, 1021, 1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	494, 1146
AlwNI	CAGNNNCTG	2 cut(s)	21, 130
AoxI	GGCC	8 cut(s)	172, 187, 350, 783, 876, 953, 1010, 1033
ApeKI	GCWGC	6 cut(s)	62, 65, 130, 766, 832, 899
ApoI	RAATTY	3 cut(s)	272, 316, 921
AsiGI	ACCGGT	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	188, 350, 1033
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	5 cut(s)	268, 298, 469, 706, 1127
BalI	TGGCCA	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	473, 704
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	6 cut(s)	49, 77, 117, 778, 819, 911
BccI	CCATC	2 cut(s)	755, 977
BceAI	ACGGC	1 cut(s)	1020
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	8 cut(s)	32, 125, 606, 875, 880, 1014, 1023, 1031
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	494, 1146
BfaI	CTAG	4 cut(s)	537, 551, 917, 1128
BfmI	CTRYAG	2 cut(s)	63, 267
BisI	GCNGC	7 cut(s)	60, 63, 66, 131, 767, 833, 900
BlsI	GCNGC	7 cut(s)	61, 64, 67, 132, 768, 834, 901
Bme1390I	CCNGG	9 cut(s)	32, 125, 506, 606, 875, 880, 1014, 1023, 1031
BmgT120I	GGNCC	3 cut(s)	188, 350, 1033
BmiI	GGNNCC	2 cut(s)	190, 663
BmrFI	CCNGG	9 cut(s)	32, 125, 506, 606, 875, 880, 1014, 1023, 1031
BmsI	GCATC	4 cut(s)	70, 198, 819, 844
BpiI	GAAGAC	2 cut(s)	473, 704
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	2 cut(s)	53, 107
BpuEI	CTTGAG	1 cut(s)	814
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	6 cut(s)	84, 175, 504, 605, 1007, 1030
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	874, 1013
Bse118I	RCCGGY	3 cut(s)	47, 68, 143
Bse1I	ACTGG	2 cut(s)	15, 1092
Bse3DI	GCAATG	2 cut(s)	681, 909
Bse8I	GATNNNNATC	1 cut(s)	688
BseBI	CCWGG	8 cut(s)	32, 125, 606, 875, 880, 1014, 1023, 1031
BseDI	CCNNGG	6 cut(s)	84, 175, 504, 605, 1007, 1030
BseGI	GGATG	5 cut(s)	341, 709, 834, 1049, 1143
BseJI	GATNNNNATC	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	874, 1013
BseMI	GCAATG	2 cut(s)	681, 909
BseMII	CTCAG	3 cut(s)	32, 290, 345
BseNI	ACTGG	2 cut(s)	15, 1092
BseXI	GCAGC	6 cut(s)	49, 77, 117, 778, 819, 911
Bsh1236I	CGCG	1 cut(s)	1101
BshFI	GGCC	8 cut(s)	174, 189, 352, 785, 878, 955, 1012, 1035
BshTI	ACCGGT	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	5 cut(s)	48, 69, 144, 506, 956
BslFI	GGGAC	2 cut(s)	18, 539
BslI	CCNNNNNNNGG	2 cut(s)	874, 1013
BsmAI	GTCTC	2 cut(s)	494, 1146
BsmFI	GGGAC	2 cut(s)	18, 539
BsnI	GGCC	8 cut(s)	174, 189, 352, 785, 878, 955, 1012, 1035
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	735
BspACI	CCGC	5 cut(s)	57, 60, 257, 1068, 1101
BspANI	GGCC	8 cut(s)	174, 189, 352, 785, 878, 955, 1012, 1035
BspCNI	CTCAG	3 cut(s)	33, 291, 346
BspFNI	CGCG	1 cut(s)	1101
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	190, 663
BspMAI	CTGCAG	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	2 cut(s)	681, 909
BsrFI	RCCGGY	3 cut(s)	47, 68, 143
BsrI	ACTGG	2 cut(s)	15, 1092
BssAI	RCCGGY	3 cut(s)	47, 68, 143
BssECI	CCNNGG	6 cut(s)	84, 175, 504, 605, 1007, 1030
BssMI	GATC	1 cut(s)	735
Bst2UI	CCWGG	8 cut(s)	32, 125, 606, 875, 880, 1014, 1023, 1031
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	116, 492
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	49, 70
BstDEI	CTNAG	3 cut(s)	41, 299, 354
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	5 cut(s)	341, 709, 834, 1049, 1143
BstFNI	CGCG	1 cut(s)	1101
BstKTI	GATC	1 cut(s)	738
BstMAI	GTCTC	2 cut(s)	494, 1146
BstMBI	GATC	1 cut(s)	735
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 944
BstNI	CCWGG	8 cut(s)	32, 125, 606, 875, 880, 1014, 1023, 1031
BstSCI	CCNGG	9 cut(s)	30, 123, 504, 604, 873, 878, 1012, 1021, 1029
BstSFI	CTRYAG	2 cut(s)	63, 267
BstUI	CGCG	1 cut(s)	1101
BstV1I	GCAGC	6 cut(s)	49, 77, 117, 778, 819, 911
BstV2I	GAAGAC	2 cut(s)	473, 704
BsuRI	GGCC	8 cut(s)	174, 189, 352, 785, 878, 955, 1012, 1035
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	5 cut(s)	341, 709, 834, 1049, 1143
BtsIMutI	CAGTG	1 cut(s)	748
Cac8I	GCNNGC	2 cut(s)	49, 70
CaiI	CAGNNNCTG	2 cut(s)	21, 130
CciI	TCATGA	1 cut(s)	493
Cfr10I	RCCGGY	3 cut(s)	47, 68, 143
Cfr13I	GGNCC	3 cut(s)	188, 350, 1033
CseI	GACGC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	6 cut(s)	494, 650, 680, 825, 961, 979
DdeI	CTNAG	3 cut(s)	41, 299, 354
DpnI	GATC	1 cut(s)	737
DpnII	GATC	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	172, 876
Eam1104I	CTCTTC	2 cut(s)	116, 492
EarI	CTCTTC	2 cut(s)	116, 492
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	272, 921
EcoRII	CCWGG	8 cut(s)	30, 123, 604, 873, 878, 1012, 1021, 1029
EcoT22I	ATGCAT	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	6 cut(s)	497, 653, 683, 828, 964, 982
FaqI	GGGAC	2 cut(s)	18, 539
FatI	CATG	6 cut(s)	493, 649, 679, 824, 960, 978
FauI	CCCGC	3 cut(s)	64, 264, 1094
Fnu4HI	GCNGC	7 cut(s)	60, 63, 66, 131, 767, 833, 900
FokI	GGATG	5 cut(s)	348, 716, 841, 1056, 1150
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	7 cut(s)	60, 63, 66, 131, 767, 833, 900
FspBI	CTAG	4 cut(s)	537, 551, 917, 1128
GluI	GCNGC	7 cut(s)	60, 63, 66, 131, 767, 833, 900
GsuI	CTGGAG	2 cut(s)	53, 107
HaeIII	GGCC	8 cut(s)	174, 189, 352, 785, 878, 955, 1012, 1035
HapII	CCGG	5 cut(s)	48, 69, 144, 506, 956
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	6 cut(s)	497, 653, 683, 828, 964, 982
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HindIII	AAGCTT	2 cut(s)	239, 430
HinfI	GANTC	8 cut(s)	98, 183, 251, 513, 597, 720, 992, 1026
HpaII	CCGG	5 cut(s)	48, 69, 144, 506, 956
HphI	GGTGA	5 cut(s)	268, 298, 469, 706, 1127
Hpy166II	GTNNAC	4 cut(s)	196, 370, 865, 1019
Hpy188I	TCNGA	4 cut(s)	76, 157, 580, 636
Hpy188III	TCNNGA	6 cut(s)	221, 426, 494, 665, 793, 1128
Hpy8I	GTNNAC	4 cut(s)	196, 370, 865, 1019
Hpy99I	CGWCG	2 cut(s)	896, 1160
HpyAV	CCTTC	3 cut(s)	341, 500, 1154
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	7 cut(s)	65, 133, 674, 679, 835, 885, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 944
HpyF3I	CTNAG	3 cut(s)	41, 299, 354
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	6 cut(s)	497, 653, 683, 828, 964, 982
KroI	GCCGGC	2 cut(s)	47, 68
KroNI	GCCGGC	2 cut(s)	49, 70
Kzo9I	GATC	1 cut(s)	735
LmnI	GCTCC	5 cut(s)	17, 127, 263, 667, 1104
Lsp1109I	GCAGC	6 cut(s)	49, 77, 117, 778, 819, 911
LweI	GCATC	4 cut(s)	70, 198, 819, 844
MaeI	CTAG	4 cut(s)	537, 551, 917, 1128
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	3 cut(s)	294, 322, 713
MalI	GATC	1 cut(s)	737
MboI	GATC	1 cut(s)	735
MboII	GAAGA	8 cut(s)	103, 106, 142, 370, 473, 509, 709, 1140
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	6 cut(s)	93, 214, 272, 316, 921, 1132
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	3 cut(s)	92, 591, 729
MmeI	TCCRAC	1 cut(s)	1028
Mox20I	TGGCCA	1 cut(s)	878
Mph1103I	ATGCAT	1 cut(s)	681
MroNI	GCCGGC	2 cut(s)	47, 68
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	5 cut(s)	48, 69, 144, 506, 956
MspR9I	CCNGG	9 cut(s)	32, 125, 506, 606, 875, 880, 1014, 1023, 1031
MvaI	CCWGG	8 cut(s)	32, 125, 606, 875, 880, 1014, 1023, 1031
MvnI	CGCG	1 cut(s)	1101
MwoI	GCNNNNNNNGC	2 cut(s)	65, 944
NaeI	GCCGGC	2 cut(s)	49, 70
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	1 cut(s)	735
NgoMIV	GCCGGC	2 cut(s)	47, 68
NlaIII	CATG	6 cut(s)	497, 653, 683, 828, 964, 982
NlaIV	GGNNCC	2 cut(s)	190, 663
NmeAIII	GCCGAG	3 cut(s)	109, 150, 1032
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	681
PagI	TCATGA	1 cut(s)	493
PdiI	GCCGGC	2 cut(s)	49, 70
PfeI	GAWTC	5 cut(s)	183, 251, 513, 992, 1026
PfoI	TCCNGGA	1 cut(s)	123
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	7 cut(s)	61, 64, 67, 132, 768, 834, 901
PleI	GAGTC	3 cut(s)	92, 591, 728
PpsI	GAGTC	3 cut(s)	92, 591, 728
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	8 cut(s)	30, 123, 604, 873, 878, 1012, 1021, 1029
PspGI	CCWGG	8 cut(s)	30, 123, 604, 873, 878, 1012, 1021, 1029
PspN4I	GGNNCC	2 cut(s)	190, 663
PspPI	GGNCC	3 cut(s)	188, 350, 1033
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	2 cut(s)	21, 130
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	7 cut(s)	60, 63, 66, 131, 767, 833, 900
Sau3AI	GATC	1 cut(s)	735
Sau96I	GGNCC	3 cut(s)	188, 350, 1033
SchI	GAGTC	3 cut(s)	92, 591, 729
ScrFI	CCNGG	9 cut(s)	32, 125, 506, 606, 875, 880, 1014, 1023, 1031
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	4 cut(s)	70, 198, 819, 844
SfcI	CTRYAG	2 cut(s)	63, 267
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
Sse9I	AATT	6 cut(s)	93, 214, 272, 316, 921, 1132
SsiI	CCGC	5 cut(s)	57, 60, 257, 1068, 1101
SspMI	CTAG	4 cut(s)	537, 551, 917, 1128
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	9 cut(s)	30, 123, 504, 604, 873, 878, 1012, 1021, 1029
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	6 cut(s)	117, 396, 411, 894, 986, 1155
TasI	AATT	6 cut(s)	93, 214, 272, 316, 921, 1132
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	5 cut(s)	183, 251, 513, 992, 1026
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	6 cut(s)	62, 65, 130, 766, 832, 899
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	5 cut(s)	482, 509, 510, 977, 984
TspGWI	ACGGA	4 cut(s)	105, 192, 716, 732
TspRI	CASTG	1 cut(s)	748
XapI	RAATTY	3 cut(s)	272, 316, 921
XbaI	TCTAGA	1 cut(s)	1127
XspI	CTAG	4 cut(s)	537, 551, 917, 1128
Zsp2I	ATGCAT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.