Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

5756112 .. 5758320

Gene Structure 2209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAGCCAACAAATATGAAGGAAGTTCCATCACGAACAATACAAAGACCACATGGAAAAGACAGACGAGTCAAGCAGTACTTATTTAGTTGTGAGGAAAAAGTCACCACCGAAATCCATCTCCTCCTCTCCCCACAACGGCGTCGTCTTGTGACGAGAGTACAATCCAGTGAGGCAGCTCTCATGGATTGTTGCTCTGGTTTGTGTGCCTGCTTTGCCCGAAAAGGCGCGCAGAGCCAAGACGACGACGCTGCTTCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCCACCGGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGGGTCTGTTGCCAAATGGGGTAGAAGTAGCTATAAAGAAACTCTCTTTAGATTCGAGGCAAGGAGTGAGGGAATTTACCAATGAGGTAAAACTGTTACTTAGAGTTCAGCACAAGAATTTGGTAATGTTAATGGGGTGTTGTGTACAAGGACCTGAGAAGATGTTGGTTTATGAGTACCTCCCAAACAAGAGCCTTGATTACTTTATTTTTGATCAAATCAAATCTGCATCTCTGGATTGGATGACGAGGTTTCGGATTATAACAGGAGTGGCTAGAGGTCTTCTTTACCTTCATGAAGAGGCGCCGGTGAGGATCATTCATAGGGATATTAAAGCAAGTAATATATTGTTGGATGAGAAGCTTGACCCGAAAATCGCGGATTTTGGATTGGCAAGGCTGTTTCCTGGGGAAGACACTCATGTAAATACATTTAGGATTTCTGGTACTCATGGTTATATGGCCCCTGAATATGCAATGCATGGATATTTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTATTGGTGTTAGAGATTGTCAGTGGGAGAAAGAACCATGATCGACAGCTTGATAGAGAAAAGGCAGACCTCTTGAGCTATACATGGAAGTTGTATGAAGCAGGAAAGGCATTGGAATTAGTTGACCCAGCCCTAGCCAGGTGCAATCGTGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAATCTTGCAGATAGGCCTGACATGAACTCTGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGTACGGTGGACTACTACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACTAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTATTCTAGAAATTCAATTTCTTATTCTTCTATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

445

Amino Acids

49.67

Weight (kDa)

8.21

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	106 - 314	7.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	108 - 371	3.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	664
AccII	CGCG	2 cut(s)	230, 740
AciI	CCGC	1 cut(s)	740
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	434, 478, 1300
AcyI	GRCGYC	2 cut(s)	142, 665
AfaI	GTAC	7 cut(s)	80, 162, 507, 539, 808, 1185, 1255
AfiI	CCNNNNNNNGG	3 cut(s)	138, 1020, 1154
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	1172, 1305
AjnI	CCWGG	4 cut(s)	766, 1019, 1153, 1162
AluBI	AGCT	7 cut(s)	179, 290, 392, 724, 931, 960, 1057
AluI	AGCT	7 cut(s)	179, 290, 392, 724, 931, 960, 1057
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	5 cut(s)	349, 822, 1094, 1174, 1209
ApeKI	GCWGC	4 cut(s)	4, 176, 251, 1040
ApoI	RAATTY	3 cut(s)	434, 478, 1300
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	3 cut(s)	230, 232, 667
AspS9I	GGNCC	3 cut(s)	350, 512, 823
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	97, 682
AvaII	GGWCC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	1245, 1278
BanI	GGYRCC	1 cut(s)	664
BbsI	GAAGAC	3 cut(s)	635, 780, 866
BbvI	GCAGC	4 cut(s)	16, 188, 238, 1052
BccI	CCATC	2 cut(s)	37, 126
BceAI	ACGGC	2 cut(s)	155, 1161
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	4 cut(s)	768, 1021, 1155, 1164
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	5 cut(s)	636, 1016, 1058, 1233, 1296
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	4 cut(s)	5, 177, 252, 1041
BlsI	GCNGC	4 cut(s)	6, 178, 253, 1042
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	5 cut(s)	353, 768, 1021, 1155, 1164
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	350, 512, 823
BmiI	GGNNCC	2 cut(s)	666, 825
BmrFI	CCNGG	5 cut(s)	353, 768, 1021, 1155, 1164
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	3 cut(s)	635, 780, 866
BpuEI	CTTGAG	2 cut(s)	976, 1111
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	2 cut(s)	142, 665
BsaJI	CCNNGG	3 cut(s)	318, 767, 1177
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 1020, 1154
Bse118I	RCCGGY	2 cut(s)	305, 667
Bse1I	ACTGG	2 cut(s)	168, 1252
Bse3DI	GCAATG	2 cut(s)	843, 1050
BseBI	CCWGG	4 cut(s)	768, 1021, 1155, 1164
BseDI	CCNNGG	3 cut(s)	318, 767, 1177
BseGI	GGATG	3 cut(s)	609, 721, 871
BseLI	CCNNNNNNNGG	3 cut(s)	138, 1020, 1154
BseMI	GCAATG	2 cut(s)	843, 1050
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	168, 1252
BsePI	GCGCGC	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	113, 116, 1301
BseXI	GCAGC	4 cut(s)	16, 188, 238, 1052
BseYI	CCCAGC	1 cut(s)	1009
Bsh1236I	CGCG	2 cut(s)	230, 740
BshFI	GGCC	5 cut(s)	351, 824, 1096, 1176, 1211
BshNI	GGYRCC	1 cut(s)	664
BshTI	ACCGGT	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	306, 353, 668
BslI	CCNNNNNNNGG	3 cut(s)	138, 1020, 1154
BsmI	GAATGC	1 cut(s)	1050
BsnI	GGCC	5 cut(s)	351, 824, 1096, 1176, 1211
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	574, 675, 922
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	5 cut(s)	351, 824, 1096, 1176, 1211
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	230, 740
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	666, 825
BspPI	GGATC	1 cut(s)	683
BspT107I	GGYRCC	1 cut(s)	664
BsrDI	GCAATG	2 cut(s)	843, 1050
BsrFI	RCCGGY	2 cut(s)	305, 667
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	168, 1252
BssAI	RCCGGY	2 cut(s)	305, 667
BssECI	CCNNGG	3 cut(s)	318, 767, 1177
BssHII	GCGCGC	1 cut(s)	228
BssMI	GATC	3 cut(s)	574, 675, 922
BssNI	GRCGYC	2 cut(s)	142, 665
Bst2UI	CCWGG	4 cut(s)	768, 1021, 1155, 1164
Bst4CI	ACNGT	3 cut(s)	341, 456, 1188
Bst6I	CTCTTC	2 cut(s)	654, 1149
BstACI	GRCGYC	2 cut(s)	142, 665
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	211, 230
BstDEI	CTNAG	3 cut(s)	461, 516, 1257
BstDSI	CCRYGG	1 cut(s)	1177
BstF5I	GGATG	3 cut(s)	609, 721, 871
BstFNI	CGCG	2 cut(s)	230, 740
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	3 cut(s)	230, 232, 667
BstKTI	GATC	3 cut(s)	577, 678, 925
BstMBI	GATC	3 cut(s)	574, 675, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 234, 989, 1085
BstNI	CCWGG	4 cut(s)	768, 1021, 1155, 1164
BstSCI	CCNGG	5 cut(s)	351, 766, 1019, 1153, 1162
BstUI	CGCG	2 cut(s)	230, 740
BstV1I	GCAGC	4 cut(s)	16, 188, 238, 1052
BstV2I	GAAGAC	3 cut(s)	635, 780, 866
BsuRI	GGCC	5 cut(s)	351, 824, 1096, 1176, 1211
BtgI	CCRYGG	1 cut(s)	1177
BtsCI	GGATG	3 cut(s)	609, 721, 871
BtsIMutI	CAGTG	4 cut(s)	175, 861, 910, 1245
Cac8I	GCNNGC	2 cut(s)	211, 230
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	3 cut(s)	230, 232, 667
Cfr10I	RCCGGY	2 cut(s)	305, 667
Cfr13I	GGNCC	3 cut(s)	350, 512, 823
CseI	GACGC	2 cut(s)	131, 257
CsiI	ACCWGGT	1 cut(s)	1153
Csp6I	GTAC	7 cut(s)	79, 161, 506, 538, 807, 1184, 1254
CspAI	ACCGGT	1 cut(s)	305
CviQI	GTAC	7 cut(s)	79, 161, 506, 538, 807, 1184, 1254
DdeI	CTNAG	3 cut(s)	461, 516, 1257
DinI	GGCGCC	1 cut(s)	666
DpnI	GATC	3 cut(s)	576, 677, 924
DpnII	GATC	3 cut(s)	574, 675, 922
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	654, 1149
EarI	CTCTTC	2 cut(s)	654, 1149
Eco147I	AGGCCT	1 cut(s)	1096
Eco47I	GGWCC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	4 cut(s)	766, 1019, 1153, 1162
EcoT22I	ATGCAT	1 cut(s)	843
EgeI	GGCGCC	1 cut(s)	666
EheI	GGCGCC	1 cut(s)	666
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	5, 177, 252, 1041
FokI	GGATG	3 cut(s)	616, 728, 878
Fsp4HI	GCNGC	4 cut(s)	5, 177, 252, 1041
FspBI	CTAG	5 cut(s)	636, 1016, 1058, 1233, 1296
GlaI	GCGC	3 cut(s)	229, 231, 666
GluI	GCNGC	4 cut(s)	5, 177, 252, 1041
GsaI	CCCAGC	1 cut(s)	1013
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	5 cut(s)	351, 824, 1096, 1176, 1211
HapII	CCGG	3 cut(s)	306, 353, 668
HgaI	GACGC	2 cut(s)	131, 257
HhaI	GCGC	3 cut(s)	230, 232, 667
Hin1I	GRCGYC	2 cut(s)	142, 665
Hin6I	GCGC	3 cut(s)	228, 230, 665
HinP1I	GCGC	3 cut(s)	228, 230, 665
HincII	GTYRAC	2 cut(s)	325, 1006
HindII	GTYRAC	2 cut(s)	325, 1006
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	5 cut(s)	69, 260, 413, 1133, 1242
HpaII	CCGG	3 cut(s)	306, 353, 668
HphI	GGTGA	2 cut(s)	97, 682
Hpy166II	GTNNAC	6 cut(s)	325, 358, 506, 1006, 1160, 1191
Hpy188I	TCNGA	5 cut(s)	259, 268, 319, 335, 618
Hpy188III	TCNNGA	6 cut(s)	33, 596, 656, 955, 1031, 1296
Hpy8I	GTNNAC	6 cut(s)	325, 358, 506, 1006, 1160, 1191
Hpy99I	CGWCG	3 cut(s)	147, 248, 251
HpyAV	CCTTC	3 cut(s)	13, 662, 1322
HpyCH4III	ACNGT	3 cut(s)	341, 456, 1188
HpyCH4V	TGCA	8 cut(s)	4, 295, 590, 836, 841, 1026, 1050, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 234, 989, 1085
HpyF3I	CTNAG	3 cut(s)	461, 516, 1257
Hsp92I	GRCGYC	2 cut(s)	142, 665
HspAI	GCGC	3 cut(s)	228, 230, 665
KasI	GGCGCC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	574, 675, 922
Lsp1109I	GCAGC	4 cut(s)	16, 188, 238, 1052
LweI	GCATC	1 cut(s)	599
MabI	ACCWGGT	1 cut(s)	1153
MaeI	CTAG	5 cut(s)	636, 1016, 1058, 1233, 1296
MaeIII	GTNAC	4 cut(s)	103, 151, 282, 456
MalI	GATC	3 cut(s)	576, 677, 924
MboI	GATC	3 cut(s)	574, 675, 922
MboII	GAAGA	8 cut(s)	304, 532, 635, 671, 785, 871, 1136, 1308
MluCI	AATT	5 cut(s)	434, 478, 998, 1300, 1305
Mly113I	GGCGCC	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	693
Mph1103I	ATGCAT	1 cut(s)	843
MseI	TTAA	2 cut(s)	491, 693
MspI	CCGG	3 cut(s)	306, 353, 668
MspR9I	CCNGG	5 cut(s)	353, 768, 1021, 1155, 1164
Mva1269I	GAATGC	1 cut(s)	1050
MvaI	CCWGG	4 cut(s)	768, 1021, 1155, 1164
MvnI	CGCG	2 cut(s)	230, 740
MwoI	GCNNNNNNNGC	4 cut(s)	215, 234, 989, 1085
NarI	GGCGCC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	574, 675, 922
NlaIV	GGNNCC	2 cut(s)	666, 825
NmuCI	GTSAC	2 cut(s)	103, 151
NsiI	ATGCAT	1 cut(s)	843
PagI	TCATGA	1 cut(s)	655
PauI	GCGCGC	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	1096
PctI	GAATGC	1 cut(s)	1050
PfeI	GAWTC	4 cut(s)	260, 413, 1133, 1242
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	6, 178, 253, 1042
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	4 cut(s)	766, 1019, 1153, 1162
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	4 cut(s)	766, 1019, 1153, 1162
PspN4I	GGNNCC	2 cut(s)	666, 825
PspPI	GGNCC	3 cut(s)	350, 512, 823
PspPPI	RGGWCCY	1 cut(s)	512
PteI	GCGCGC	1 cut(s)	228
RsaI	GTAC	7 cut(s)	80, 162, 507, 539, 808, 1185, 1255
RsaNI	GTAC	7 cut(s)	79, 161, 506, 538, 807, 1184, 1254
SaqAI	TTAA	2 cut(s)	491, 693
SatI	GCNGC	4 cut(s)	5, 177, 252, 1041
Sau3AI	GATC	3 cut(s)	574, 675, 922
Sau96I	GGNCC	3 cut(s)	350, 512, 823
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	5 cut(s)	353, 768, 1021, 1155, 1164
SexAI	ACCWGGT	1 cut(s)	1153
SfaNI	GCATC	1 cut(s)	599
SfoI	GGCGCC	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	667
SinI	GGWCC	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	955, 1126
SmoI	CTYRAG	2 cut(s)	955, 1126
Sse9I	AATT	5 cut(s)	434, 478, 998, 1300, 1305
SseBI	AGGCCT	1 cut(s)	1096
SsiI	CCGC	1 cut(s)	740
SspDI	GGCGCC	1 cut(s)	664
SspMI	CTAG	5 cut(s)	636, 1016, 1058, 1233, 1296
StuI	AGGCCT	1 cut(s)	1096
StyD4I	CCNGG	5 cut(s)	351, 766, 1019, 1153, 1162
TaaI	ACNGT	3 cut(s)	341, 456, 1188
TaqI	TCGA	2 cut(s)	416, 925
TasI	AATT	5 cut(s)	434, 478, 998, 1300, 1305
TatI	WGTACW	3 cut(s)	78, 160, 505
TfiI	GAWTC	4 cut(s)	260, 413, 1133, 1242
Tru1I	TTAA	2 cut(s)	491, 693
Tru9I	TTAA	2 cut(s)	491, 693
TscAI	CASTG	4 cut(s)	175, 861, 910, 1252
TseFI	GTSAC	2 cut(s)	103, 151
TseI	GCWGC	4 cut(s)	4, 176, 251, 1040
Tsp45I	GTSAC	2 cut(s)	103, 151
TspDTI	ATGAA	8 cut(s)	32, 644, 671, 672, 993, 1103, 1118, 1125
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	4 cut(s)	175, 861, 910, 1252
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	3 cut(s)	434, 478, 1300
XbaI	TCTAGA	1 cut(s)	1295
XspI	CTAG	5 cut(s)	636, 1016, 1058, 1233, 1296
ZrmI	AGTACT	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.