Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

5926683 .. 5928790

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCAGCCAACAAATATGAAGGAAGTTCCATCACGAACAATACAAAGACCACATGGAAAAGACAGACGAGTCAAGCAGTACTTATTTAGTTGTGAGGAAAAAGTCACCACCGAAATCCATCTCCTCCTCTCCCCACAACGGCGTCGTCTTGTGACGAGAGTACAATCCAGTGAGGCAGCTCTCATGGATTGTTGCTCTGGTTTGTGTGCCTGCTTTGCCCGAAAAGGCGCGCAGAGCCAAGACGACGACGCTGCTTCGGAATCGTCTGACCTGTTTTTTGAGTTACAAGCTCTGCAAATCGCCACCGGTTTCTTCTCCGAGGTCAACAAACTCGGACACGGTGGCTTCGGCCCGGTTTACAAGACATGGAAGTTGTATGAAGCAGGAAAGGCATTGGAATTAGTTGACCCAGCCCTAGCCAGGTGCAATCGTGATGAGGCAGCAATGTGCATTCAGCTAGGGCTTTTATGTTGTCAGGCAAATCTTGCAGATAGGCCTGACATGAACTCTGTTCATCTCATGTTCTCAAGCGATTCATTTACTCTTCCCAGACCAGGTAAACCTGGACTTCAAGGCCGTGGAGTACGGTGGACTACTACCTCTACTTCGGCCTTTACCAACAATACTAATGCTAGTAGTGGATTCACTGGTGGTACTAAGGTTTCTGGGGGCAGTAGTTTTGTTGAGGAGTATTCTAGAAATTCAATTTCTTATTCTTCTATTGATGAAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

245

Amino Acids

26.84

Weight (kDa)

8.06

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	4 cut(s)	80, 162, 585, 655
AfiI	CCNNNNNNNGG	3 cut(s)	138, 420, 554
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	572, 705
AjnI	CCWGG	3 cut(s)	419, 553, 562
AluBI	AGCT	3 cut(s)	179, 290, 457
AluI	AGCT	3 cut(s)	179, 290, 457
AoxI	GGCC	4 cut(s)	349, 494, 574, 609
ApeKI	GCWGC	4 cut(s)	4, 176, 251, 440
ApoI	RAATTY	1 cut(s)	700
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	230, 232
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BbvI	GCAGC	4 cut(s)	16, 188, 238, 452
BccI	CCATC	2 cut(s)	37, 126
BceAI	ACGGC	2 cut(s)	155, 561
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	3 cut(s)	421, 555, 564
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	4 cut(s)	416, 458, 633, 696
BisI	GCNGC	4 cut(s)	5, 177, 252, 441
BlsI	GCNGC	4 cut(s)	6, 178, 253, 442
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	4 cut(s)	353, 421, 555, 564
BmgT120I	GGNCC	1 cut(s)	350
BmrFI	CCNGG	4 cut(s)	353, 421, 555, 564
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	318, 577
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 420, 554
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	168, 652
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	421, 555, 564
BseDI	CCNNGG	2 cut(s)	318, 577
BseLI	CCNNNNNNNGG	3 cut(s)	138, 420, 554
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	168, 652
BsePI	GCGCGC	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	113, 116, 701
BseXI	GCAGC	4 cut(s)	16, 188, 238, 452
BseYI	CCCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	351, 496, 576, 611
BshTI	ACCGGT	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	306, 353
BslI	CCNNNNNNNGG	3 cut(s)	138, 420, 554
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	351, 496, 576, 611
BspANI	GGCC	4 cut(s)	351, 496, 576, 611
BspFNI	CGCG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	168, 652
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	318, 577
BssHII	GCGCGC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	142
Bst2UI	CCWGG	3 cut(s)	421, 555, 564
Bst4CI	ACNGT	2 cut(s)	341, 588
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	211, 230
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	1 cut(s)	577
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	230, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 234, 389, 485
BstNI	CCWGG	3 cut(s)	421, 555, 564
BstSCI	CCNGG	4 cut(s)	351, 419, 553, 562
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	4 cut(s)	16, 188, 238, 452
BsuRI	GGCC	4 cut(s)	351, 496, 576, 611
BtgI	CCRYGG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	175, 645
Cac8I	GCNNGC	2 cut(s)	211, 230
CfoI	GCGC	2 cut(s)	230, 232
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	2 cut(s)	131, 257
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	4 cut(s)	79, 161, 584, 654
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	5 cut(s)	53, 184, 366, 502, 520
CviQI	GTAC	4 cut(s)	79, 161, 584, 654
DdeI	CTNAG	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	419, 553, 562
FaeI	CATG	5 cut(s)	56, 187, 369, 505, 523
FaiI	YATR	8 cut(s)	17, 54, 185, 367, 378, 469, 503, 521
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	5 cut(s)	52, 183, 365, 501, 519
Fnu4HI	GCNGC	4 cut(s)	5, 177, 252, 441
Fsp4HI	GCNGC	4 cut(s)	5, 177, 252, 441
FspBI	CTAG	4 cut(s)	416, 458, 633, 696
GlaI	GCGC	2 cut(s)	229, 231
GluI	GCNGC	4 cut(s)	5, 177, 252, 441
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	4 cut(s)	351, 496, 576, 611
HapII	CCGG	2 cut(s)	306, 353
HgaI	GACGC	2 cut(s)	131, 257
HhaI	GCGC	2 cut(s)	230, 232
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	5 cut(s)	56, 187, 369, 505, 523
Hin6I	GCGC	2 cut(s)	228, 230
HinP1I	GCGC	2 cut(s)	228, 230
HincII	GTYRAC	2 cut(s)	325, 406
HindII	GTYRAC	2 cut(s)	325, 406
HinfI	GANTC	4 cut(s)	69, 260, 533, 642
HpaII	CCGG	2 cut(s)	306, 353
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	5 cut(s)	325, 358, 406, 560, 591
Hpy188I	TCNGA	4 cut(s)	259, 268, 319, 335
Hpy188III	TCNNGA	3 cut(s)	33, 431, 696
Hpy8I	GTNNAC	5 cut(s)	325, 358, 406, 560, 591
Hpy99I	CGWCG	3 cut(s)	147, 248, 251
HpyAV	CCTTC	2 cut(s)	13, 722
HpyCH4III	ACNGT	2 cut(s)	341, 588
HpyCH4V	TGCA	5 cut(s)	4, 295, 426, 450, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 234, 389, 485
HpyF3I	CTNAG	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	5 cut(s)	56, 187, 369, 505, 523
HspAI	GCGC	2 cut(s)	228, 230
Lsp1109I	GCAGC	4 cut(s)	16, 188, 238, 452
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	4 cut(s)	416, 458, 633, 696
MaeIII	GTNAC	3 cut(s)	103, 151, 282
MboII	GAAGA	3 cut(s)	304, 536, 708
MluCI	AATT	3 cut(s)	398, 700, 705
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	88, 134, 137, 166, 313, 430, 610, 679
MspI	CCGG	2 cut(s)	306, 353
MspR9I	CCNGG	4 cut(s)	353, 421, 555, 564
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	421, 555, 564
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	215, 234, 389, 485
NciI	CCSGG	1 cut(s)	353
NlaIII	CATG	5 cut(s)	56, 187, 369, 505, 523
NmuCI	GTSAC	2 cut(s)	103, 151
PauI	GCGCGC	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	260, 533, 642
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	6, 178, 253, 442
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	419, 553, 562
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	3 cut(s)	419, 553, 562
PspPI	GGNCC	1 cut(s)	350
PteI	GCGCGC	1 cut(s)	228
RsaI	GTAC	4 cut(s)	80, 162, 585, 655
RsaNI	GTAC	4 cut(s)	79, 161, 584, 654
SatI	GCNGC	4 cut(s)	5, 177, 252, 441
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	4 cut(s)	353, 421, 555, 564
SexAI	ACCWGGT	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	398, 700, 705
SseBI	AGGCCT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	416, 458, 633, 696
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	4 cut(s)	351, 419, 553, 562
TaaI	ACNGT	2 cut(s)	341, 588
TasI	AATT	3 cut(s)	398, 700, 705
TatI	WGTACW	2 cut(s)	78, 160
TfiI	GAWTC	3 cut(s)	260, 533, 642
TscAI	CASTG	2 cut(s)	175, 652
TseFI	GTSAC	2 cut(s)	103, 151
TseI	GCWGC	4 cut(s)	4, 176, 251, 440
Tsp45I	GTSAC	2 cut(s)	103, 151
TspDTI	ATGAA	5 cut(s)	32, 393, 503, 518, 525
TspRI	CASTG	2 cut(s)	175, 652
XapI	RAATTY	1 cut(s)	700
XbaI	TCTAGA	1 cut(s)	695
XspI	CTAG	4 cut(s)	416, 458, 633, 696
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.