Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014651.1

Orthogroup ID

OG0010567

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1080

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggattgttgctctggtttgtgtgcctgctttgcccgaaaaggcgcgcagagccaagacgacgacgctgcttcggaatcgtctgacctgttttttgagttacaagctctgcaaatcgccaccggtttcttctccgaggtcaacaaactcggacacggtggcttcggcccggtttacaagggtctgttgccaaatggagtagaagtagctataaagaaactctctttagattcgaggcaaggagtgagggaatttaccaatgaggtaaaactgttacttagagttcagcacaagaatttggtaatgttaatggggtgttgtgtacaaggacctgagaagatgttggtttatgagtacctcccaaacaagagccttgattacttaatttttgatcaaatcaaatctgcatctctggattggatgacgaggtttcggattataacaggagtggctagaggtcttctttaccttcatgaagaggcgccggtgaggatcattcatagggatattaaagcaagtaatatattgttggatgagaagcttgatccgaaaatcgcggattttggattggcaaggctgtttcctggggaagacactcatgtaaatacatttaggatttctggtactcatggttatatggcccctgaatatgcaatgcatggatatttgtcggtgaagacggatgttttcagttatggagtattggtgttagagattgtcagtgggagaaagaaccatgatcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.72

Weight (kDa)

6.45

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890 FvH4_5g11890
malus_domestica	MD06G1217600.v1.1 MD14G1227800.v1.1
prunus_persica	Prupe.5G222800_v2.0.a1
pyrus_communis	pycom14g18920
rosa_chinensis	RchiOBHm_Chr7g0185691
rosa_laevigata	RLG00000004894
rosa_multiflora	Rmu_sc0008747.1_g000003 Rmu_sc0010190.1_g000002 Rmu_sc0014651.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268730
rosa_rugosa	Rorug06G0470500
rosa_samantha	Rh7AG071900 Rh7BG076000 Rh7CG076000 Rh7DG076000
rosa_wichuraiana	Rw7G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	2 cut(s)	47, 557
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	500, 539
AcsI	RAATTY	2 cut(s)	251, 295
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	3 cut(s)	324, 356, 625
AgeI	ACCGGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	3 cut(s)	107, 209, 541
AluI	AGCT	3 cut(s)	107, 209, 541
AlwI	GGATC	2 cut(s)	500, 539
AoxI	GGCC	2 cut(s)	166, 639
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	251, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	3 cut(s)	47, 49, 484
AspS9I	GGNCC	3 cut(s)	167, 329, 640
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	499, 685
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	3 cut(s)	452, 597, 683
BbvI	GCAGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	170
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	170, 585
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	167, 329, 640
BmiI	GGNNCC	2 cut(s)	483, 642
BmrFI	CCNGG	2 cut(s)	170, 585
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	3 cut(s)	452, 597, 683
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	135, 584
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 690, 720
Bse118I	RCCGGY	2 cut(s)	122, 484
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	135, 584
BseGI	GGATG	3 cut(s)	426, 538, 688
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	324
BsePI	GCGCGC	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	2 cut(s)	47, 557
BshFI	GGCC	2 cut(s)	168, 641
BshNI	GGYRCC	1 cut(s)	481
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	123, 170, 485
BsnI	GGCC	2 cut(s)	168, 641
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	391, 492, 544, 739
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	168, 641
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	47, 557
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	483, 642
BspPI	GGATC	2 cut(s)	500, 539
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	122, 484
BsrGI	TGTACA	1 cut(s)	322
BssAI	RCCGGY	2 cut(s)	122, 484
BssECI	CCNNGG	2 cut(s)	135, 584
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	4 cut(s)	391, 492, 544, 739
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	158, 273
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	28, 47
BstDEI	CTNAG	2 cut(s)	278, 333
BstF5I	GGATG	3 cut(s)	426, 538, 688
BstFNI	CGCG	2 cut(s)	47, 557
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	3 cut(s)	47, 49, 484
BstKTI	GATC	4 cut(s)	394, 495, 547, 742
BstMBI	GATC	4 cut(s)	391, 492, 544, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 51
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	168, 583
BstUI	CGCG	2 cut(s)	47, 557
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	3 cut(s)	452, 597, 683
BsuRI	GGCC	2 cut(s)	168, 641
BtsCI	GGATG	3 cut(s)	426, 538, 688
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	28, 47
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	3 cut(s)	47, 49, 484
Cfr10I	RCCGGY	2 cut(s)	122, 484
Cfr13I	GGNCC	3 cut(s)	167, 329, 640
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	323, 355, 624
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	5 cut(s)	473, 599, 629, 659, 737
CviQI	GTAC	3 cut(s)	323, 355, 624
DdeI	CTNAG	2 cut(s)	278, 333
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	4 cut(s)	393, 494, 546, 741
DpnII	GATC	4 cut(s)	391, 492, 544, 739
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	660
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
FaeI	CATG	5 cut(s)	476, 602, 632, 662, 740
FatI	CATG	5 cut(s)	472, 598, 628, 658, 736
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	433, 545, 695
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	3 cut(s)	46, 48, 483
GluI	GCNGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	168, 641
HapII	CCGG	3 cut(s)	123, 170, 485
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	3 cut(s)	47, 49, 484
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	5 cut(s)	476, 602, 632, 662, 740
Hin6I	GCGC	3 cut(s)	45, 47, 482
HinP1I	GCGC	3 cut(s)	45, 47, 482
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	77, 230
HpaII	CCGG	3 cut(s)	123, 170, 485
HphI	GGTGA	2 cut(s)	499, 685
Hpy166II	GTNNAC	3 cut(s)	142, 175, 323
Hpy188I	TCNGA	6 cut(s)	76, 85, 136, 152, 435, 549
Hpy188III	TCNNGA	2 cut(s)	413, 473
Hpy8I	GTNNAC	3 cut(s)	142, 175, 323
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	2 cut(s)	158, 273
HpyCH4V	TGCA	4 cut(s)	112, 407, 653, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 51
HpyF3I	CTNAG	2 cut(s)	278, 333
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	5 cut(s)	476, 602, 632, 662, 740
HspAI	GCGC	3 cut(s)	45, 47, 482
KasI	GGCGCC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 492, 544, 739
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	99, 273
MalI	GATC	4 cut(s)	393, 494, 546, 741
MboI	GATC	4 cut(s)	391, 492, 544, 739
MboII	GAAGA	6 cut(s)	121, 349, 452, 488, 602, 688
MluCI	AATT	3 cut(s)	251, 295, 384
Mly113I	GGCGCC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	9 cut(s)	130, 228, 240, 256, 368, 420, 449, 472, 483
Mph1103I	ATGCAT	1 cut(s)	660
MseI	TTAA	3 cut(s)	308, 383, 510
MspI	CCGG	3 cut(s)	123, 170, 485
MspR9I	CCNGG	2 cut(s)	170, 585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	2 cut(s)	47, 557
MwoI	GCNNNNNNNGC	2 cut(s)	32, 51
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	391, 492, 544, 739
NlaIII	CATG	5 cut(s)	476, 602, 632, 662, 740
NlaIV	GGNNCC	2 cut(s)	483, 642
NsiI	ATGCAT	1 cut(s)	660
PagI	TCATGA	1 cut(s)	472
PauI	GCGCGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	77, 230
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	483, 642
PspPI	GGNCC	3 cut(s)	167, 329, 640
PspPPI	RGGWCCY	1 cut(s)	329
PteI	GCGCGC	1 cut(s)	45
RsaI	GTAC	3 cut(s)	324, 356, 625
RsaNI	GTAC	3 cut(s)	323, 355, 624
SaqAI	TTAA	3 cut(s)	308, 383, 510
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	391, 492, 544, 739
Sau96I	GGNCC	3 cut(s)	167, 329, 640
ScrFI	CCNGG	2 cut(s)	170, 585
SfaNI	GCATC	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	483
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	251, 295, 384
SsiI	CCGC	1 cut(s)	557
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	168, 583
TaaI	ACNGT	2 cut(s)	158, 273
TaqI	TCGA	2 cut(s)	233, 742
TasI	AATT	3 cut(s)	251, 295, 384
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	77, 230
Tru1I	TTAA	3 cut(s)	308, 383, 510
Tru9I	TTAA	3 cut(s)	308, 383, 510
TscAI	CASTG	1 cut(s)	727
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	461, 488, 489
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	251, 295
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.