Rorug06G0470500

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
59395843 .. 59396554
712 bp
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UTR
Exon/CDS
Intron
Rorug06G0470500.1

Sequence Viewer

Length: 195 bp
ATGGACCCTAGTGAGTTCAAACCTCCACCCAACTATATTGCCACTTCGAAACAGAGCACTGCTAACGCCCTCCAAGGCCGTTTCTTTCTTTCTTCTCGTGTACCTCCCTCCTCTGTTTCAATTCAGAGTCTGGCGGATTGGTCATCTGGGTGGTCTCAAAGATTGAATTTTGAGGTTGTTTTGGTGGTTGATTGA

Protein Analysis

64

Amino Acids

7.07

Weight (kDa)

6.07

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 3 cut(s) 19, 120, 166
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 59
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 73
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 1 cut(s) 78
CviKI_1 RGCY 1 cut(s) 78
CviQI GTAC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 1 cut(s) 36
FspBI CTAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 78
HinfI GANTC 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 101
LpnPI CCDG 2 cut(s) 116, 132
MaeI CTAG 1 cut(s) 9
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 120, 166
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 6 cut(s) 33, 80, 114, 118, 121, 166
MslI CAYNNNNRTG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 47
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 59
SetI ASST 3 cut(s) 25, 106, 177
SfuI TTCGAA 1 cut(s) 47
SgeI CNNG 6 cut(s) 21, 86, 108, 110, 143, 159
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 2 cut(s) 120, 166
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 120, 166
TscAI CASTG 1 cut(s) 64
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.