Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Reverse (-)

7789033 .. 7791663

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAATCTGCGAACGAGAGAATAACATCAAGCCCCTCTTCCTCACCATTACCATCATCTTCAGACCATTTGCAAGCACCTCCCGAAAGCAAAGGCACAGGGAATACAGATCCGAAAATAAATCAGACGCTTACAGGTTCTAGTGAAATTTCATCTACAGGCAAAGTCTTAAACCCCAACACCCCTGCAAGTACTGCTGCCTCTTTGGTAGTTGATGTGAGCAATGATGTAATTTCTTCGGATAATGCCAATGCAACCATCAATCCATCCCCCACCGGCTCTTTCTTAAGTGCAAGCTACACCGATGAGGATTTTCTAGGCAGCTCTACATCTAGGACTGATGAGGCGTTGAGCTTGGGAAATGATCCAGCTGCAACCCAATTTCCTCTTACGCAGGTGATGGAGCGGCCTAGTGACACTGCTAGTGCCTCCGGGTACAGGATCCCTGACTATGTGTTTGCTAGAAAACCATCCGCAGCCCCAATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACCAGGGAACAGTTTTCCTACTTAGGTAAATCCGGTGAGTTGGGAATGCCTGGAGAACTGAACATGTCATATATAGATTTTTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAGTTTTCCCAAAATAGCCGCAGTTTGGTTGAGGGACCAAGTCCAAGAGTAACTGAAGCAAAAGCCGTAGAGACTATGAGACAGGTTATAATGGAATCTGCCGAAAATGATAGCAAAGCAAGTCCATCATCTTCAGCCGATAATCACAGTAAAGGAAGCCCATCGCCGCGCCTCCAAAATCACGCAGTCAGTCCATCCCTCACCGACAACAAGTTTAATAGTCCATCTGTCACGTCCCATGCTTCCAATGGCAGTACTAAATCATTTGCATTTCCAATATTGGCAGGGAGTGAAGATAGAAGCAGTTCACTGAAAATAGATGGAATAGGGAAGCAAAAGCAACAATATTCGCCACGAGGCCAACCACATCAAAAGCAAAATTCACCACGAATAGATTCACGGCCACAGACACCTAGAGAAAGCAGCACACCAAATGCAGCATCCCAGCCCTCGAAATCAGTCCTTGCTACGGTTAAGCACAAATGGCTGTCTTGCTTCTCTTGTTGCTCATGCTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

41.68

Weight (kDa)

5.61

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	1 cut(s)	826
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	4 cut(s)	406, 474, 676, 824
AclWI	GGATC	4 cut(s)	104, 359, 436, 449
AcoI	YGGCCR	1 cut(s)	1058
AcsI	RAATTY	2 cut(s)	147, 1036
AcuI	CTGAAG	3 cut(s)	45, 732, 774
AfaI	GTAC	3 cut(s)	193, 437, 913
AfiI	CCNNNNNNNGG	4 cut(s)	438, 643, 682, 1126
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	609
AjiI	CACGTC	1 cut(s)	891
AjnI	CCWGG	2 cut(s)	548, 595
AluBI	AGCT	4 cut(s)	297, 324, 354, 371
AluI	AGCT	4 cut(s)	297, 324, 354, 371
Alw26I	GTCTC	2 cut(s)	722, 730
AlwI	GGATC	4 cut(s)	104, 359, 436, 449
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	3 cut(s)	407, 1015, 1058
ApeKI	GCWGC	7 cut(s)	197, 321, 371, 476, 497, 1080, 1094
ApoI	RAATTY	2 cut(s)	147, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	2 cut(s)	961, 1051
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	692
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	6 cut(s)	36, 409, 538, 593, 850, 1032
AvaII	GGWCC	1 cut(s)	692
BamHI	GGATCC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	1011
BbvI	GCAGC	7 cut(s)	184, 333, 358, 484, 488, 1092, 1106
BceAI	ACGGC	2 cut(s)	707, 1073
BciT130I	CCWGG	2 cut(s)	550, 597
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	722, 730
BfaI	CTAG	7 cut(s)	141, 317, 333, 411, 423, 462, 1071
BfmI	CTRYAG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	385
BmcAI	AGTACT	2 cut(s)	193, 913
Bme1390I	CCNGG	3 cut(s)	433, 550, 597
Bme18I	GGWCC	1 cut(s)	692
BmgBI	CACGTC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	443, 693
BmrFI	CCNGG	3 cut(s)	433, 550, 597
BmsI	GCATC	1 cut(s)	1106
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	2 cut(s)	578, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	438, 643, 682, 1126
Bse118I	RCCGGY	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	229
BseAI	TCCGGA	1 cut(s)	643
BseBI	CCWGG	2 cut(s)	550, 597
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	4 cut(s)	266, 470, 851, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	438, 643, 682, 1126
BseMI	GCAATG	1 cut(s)	229
BseXI	GCAGC	7 cut(s)	184, 333, 358, 484, 488, 1092, 1106
BseYI	CCCAGC	1 cut(s)	1101
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	3 cut(s)	409, 1017, 1060
BsiSI	CCGG	4 cut(s)	276, 432, 579, 644
BslFI	GGGAC	2 cut(s)	705, 877
BslI	CCNNNNNNNGG	4 cut(s)	438, 643, 682, 1126
BsmAI	GTCTC	2 cut(s)	722, 730
BsmFI	GGGAC	2 cut(s)	705, 877
BsmI	GAATGC	2 cut(s)	522, 597
BsnI	GGCC	3 cut(s)	409, 1017, 1060
Bsp13I	TCCGGA	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	109, 364, 441
BspACI	CCGC	4 cut(s)	406, 474, 676, 824
BspANI	GGCC	3 cut(s)	409, 1017, 1060
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	826
BspLI	GGNNCC	2 cut(s)	443, 693
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	4 cut(s)	104, 359, 436, 449
BspTI	CTTAAG	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	3 cut(s)	109, 364, 441
BssSI	CACGAG	1 cut(s)	1011
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	2 cut(s)	550, 597
Bst4CI	ACNGT	3 cut(s)	558, 806, 1129
Bst6I	CTCTTC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	75, 295
BstDEI	CTNAG	1 cut(s)	568
BstF5I	GGATG	4 cut(s)	266, 470, 851, 1097
BstFNI	CGCG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	3 cut(s)	112, 367, 444
BstMAI	GTCTC	2 cut(s)	722, 730
BstMBI	GATC	3 cut(s)	109, 364, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 1141
BstNI	CCWGG	2 cut(s)	550, 597
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	431, 548, 595
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	826
BstV1I	GCAGC	7 cut(s)	184, 333, 358, 484, 488, 1092, 1106
BstX2I	RGATCY	2 cut(s)	109, 441
BstXI	CCANNNNNNTGG	1 cut(s)	489
BstYI	RGATCY	2 cut(s)	109, 441
BsuRI	GGCC	3 cut(s)	409, 1017, 1060
BtgZI	GCGATG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	4 cut(s)	266, 470, 851, 1097
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	417, 965
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	75, 295
CfoI	GCGC	1 cut(s)	828
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	192, 436, 912
CviAII	CATG	4 cut(s)	538, 610, 896, 1167
CviQI	GTAC	3 cut(s)	192, 436, 912
DdeI	CTNAG	1 cut(s)	568
DpnI	GATC	3 cut(s)	111, 366, 443
DpnII	GATC	3 cut(s)	109, 364, 441
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	3 cut(s)	45, 732, 774
EcoRII	CCWGG	2 cut(s)	548, 595
FaeI	CATG	4 cut(s)	541, 613, 899, 1170
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	2 cut(s)	705, 877
FatI	CATG	4 cut(s)	537, 609, 895, 1166
FokI	GGATG	4 cut(s)	253, 457, 838, 1084
FspBI	CTAG	7 cut(s)	141, 317, 333, 411, 423, 462, 1071
GlaI	GCGC	1 cut(s)	827
GsaI	CCCAGC	1 cut(s)	1105
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	409, 1017, 1060
HapII	CCGG	4 cut(s)	276, 432, 579, 644
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	541, 613, 899, 1170
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HinfI	GANTC	4 cut(s)	5, 509, 752, 1052
HpaII	CCGG	4 cut(s)	276, 432, 579, 644
HphI	GGTGA	6 cut(s)	36, 409, 538, 593, 850, 1032
Hpy166II	GTNNAC	1 cut(s)	965
Hpy188I	TCNGA	5 cut(s)	64, 114, 126, 241, 528
Hpy188III	TCNNGA	2 cut(s)	83, 644
Hpy8I	GTNNAC	1 cut(s)	965
HpyCH4III	ACNGT	3 cut(s)	558, 806, 1129
HpyCH4IV	ACGT	1 cut(s)	890
HpyCH4V	TGCA	7 cut(s)	73, 188, 254, 293, 374, 926, 1094
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 1141
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	1 cut(s)	890
Hsp92II	CATG	4 cut(s)	541, 613, 899, 1170
HspAI	GCGC	1 cut(s)	826
Kpn2I	TCCGGA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	109, 364, 441
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	7 cut(s)	184, 333, 358, 484, 488, 1092, 1106
LweI	GCATC	1 cut(s)	1106
MaeI	CTAG	7 cut(s)	141, 317, 333, 411, 423, 462, 1071
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	5 cut(s)	413, 533, 632, 706, 886
MalI	GATC	3 cut(s)	111, 366, 443
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	3 cut(s)	109, 364, 441
MboII	GAAGA	5 cut(s)	30, 51, 228, 780, 962
MflI	RGATCY	2 cut(s)	109, 441
MluCI	AATT	4 cut(s)	147, 231, 380, 1036
MroI	TCCGGA	1 cut(s)	643
MroXI	GAANNNNTTC	2 cut(s)	961, 1051
MseI	TTAA	5 cut(s)	170, 287, 873, 1131, 1173
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	4 cut(s)	276, 432, 579, 644
MspR9I	CCNGG	3 cut(s)	433, 550, 597
Mva1269I	GAATGC	2 cut(s)	522, 597
MvaI	CCWGG	2 cut(s)	550, 597
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	2 cut(s)	194, 1141
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	3 cut(s)	109, 364, 441
NlaIII	CATG	4 cut(s)	541, 613, 899, 1170
NlaIV	GGNNCC	2 cut(s)	443, 693
NmuCI	GTSAC	2 cut(s)	413, 886
NspI	RCATGY	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	385
PciI	ACATGT	1 cut(s)	609
PctI	GAATGC	2 cut(s)	522, 597
PdmI	GAANNNNTTC	2 cut(s)	961, 1051
PfeI	GAWTC	4 cut(s)	5, 509, 752, 1052
PflFI	GACNNNGTC	1 cut(s)	696
PscI	ACATGT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	548, 595
PspFI	CCCAGC	1 cut(s)	1101
PspGI	CCWGG	2 cut(s)	548, 595
PspN4I	GGNNCC	2 cut(s)	443, 693
PspPI	GGNCC	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	109, 441
PsyI	GACNNNGTC	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	193, 437, 913
RsaNI	GTAC	3 cut(s)	192, 436, 912
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	170, 287, 873, 1131, 1173
Sau3AI	GATC	3 cut(s)	109, 364, 441
Sau96I	GGNCC	1 cut(s)	692
ScaI	AGTACT	2 cut(s)	193, 913
ScrFI	CCNGG	3 cut(s)	433, 550, 597
SfaNI	GCATC	1 cut(s)	1106
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	4 cut(s)	147, 231, 380, 1036
SsiI	CCGC	4 cut(s)	406, 474, 676, 824
SspI	AATATT	2 cut(s)	936, 1004
SspMI	CTAG	7 cut(s)	141, 317, 333, 411, 423, 462, 1071
StyD4I	CCNGG	3 cut(s)	431, 548, 595
TaaI	ACNGT	3 cut(s)	558, 806, 1129
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	2 cut(s)	629, 1109
TasI	AATT	4 cut(s)	147, 231, 380, 1036
TatI	WGTACW	2 cut(s)	191, 911
TauI	GCSGC	3 cut(s)	409, 678, 826
TfiI	GAWTC	4 cut(s)	5, 509, 752, 1052
Tru1I	TTAA	5 cut(s)	170, 287, 873, 1131, 1173
Tru9I	TTAA	5 cut(s)	170, 287, 873, 1131, 1173
TscAI	CASTG	2 cut(s)	424, 972
TseFI	GTSAC	2 cut(s)	413, 886
TseI	GCWGC	7 cut(s)	197, 321, 371, 476, 497, 1080, 1094
Tsp45I	GTSAC	2 cut(s)	413, 886
TspDTI	ATGAA	2 cut(s)	141, 522
TspRI	CASTG	2 cut(s)	424, 972
Tth111I	GACNNNGTC	1 cut(s)	696
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	2 cut(s)	147, 1036
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XmnI	GAANNNNTTC	2 cut(s)	961, 1051
XspI	CTAG	7 cut(s)	141, 317, 333, 411, 423, 462, 1071
ZrmI	AGTACT	2 cut(s)	193, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.