Rh7CG057400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010088
Physical Location & Seq
Forward (+)
4176710 .. 4178137
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG057400.1

Sequence Viewer

Length: 1140 bp
ATGGAATCTGCGAATGAGAAAATAACGTCAAGCCCATCTTCCTCCCCATTACCATCATCTTCAGACCATTTGCAAGCAGCCCCTGAAAGCGAAGGCATAGGGAATTCGGACCCGAGATTAAATCAGACAGTTACAGGTGCTGGTGAGATTGCATCTGCAGGCAAAGGCTTAAGCCCCAAGACCCCTGCAAGTACTTCTGGCCCTCTGGAAGTTGATGTGGGCAATGTTGTAGCAACTTCGGAAAATGGTCTTGCAACGACTCCGTCCCCTGCTGGCTCTCTTCTAAGTACAAGCTACATCGATGAGGATTTTCAAGGCGGCTCGACACCTAAGACTGAGCAGCTTAATGGTGAGTTGAGCCAGGGCAATGATTCAGCAACACAATCGCCTCCTAAGCAGGTGATGGAGAGGCCTAGTGAGCCGAGTACTCCGTACAGGATCCCGGATTATGTCTTTGCGAGGAAACCATCCACAGCCCCGATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACCAGAGAACAGTTTGCCTTTTTAGGTAAATCTGGTGAGTTGGGTTTATGTGGAGAACAGAACATGTCTGGTCCATATATAGACTTCTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAATTTTCCCAAAACGGCGGCAATTTGGATGAGGGCCCAAATCCGAGAGTAACTGAAGCAAAAGCCGTAGAGACTATGAGAGAGGTTATAAGGGAAATTGCCGAAAATGACAACAAAGCAAGTCCATCATCTTCGGCGGATAATCACAGCAAAGGAAGCCCGTCGCCCAGCGTCCGAAATCCTATAGTCAGCCCATCCCTCACTGAACACAAGTTTCATAACATATCTAGCCTTTCTCATGCTTCTGATGGAAGTACTAAATCATTTGCATTTCCAGTATTGTCAGGCGAGGAGAGAAGTGGTTCACTGAGGGTAGATGGAGTAGGGAAGCAAAAGCAACATTCACCACGAAGAGGCTCACGGCCACAAACACCTAAAGAAAGCAGGAAGCCGATTGCTGCATCTCAGAGCCCGAAATCAGCCCTGACCCCGATTAAGCACAAATGGCTACCTTGCTCTTGTTGCCCATTCTGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

40.09

Weight (kDa)

5.62

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 3 cut(s) 318, 678, 797
AclWI GGATC 2 cut(s) 433, 446
AcoI YGGCCR 1 cut(s) 1022
AcsI RAATTY 2 cut(s) 103, 662
AcuI CTGAAG 2 cut(s) 45, 735
AfaI GTAC 5 cut(s) 193, 289, 427, 434, 916
AfiI CCNNNNNNNGG 2 cut(s) 646, 1013
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 2 cut(s) 314, 662
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 294, 343
AluI AGCT 2 cut(s) 294, 343
Alw26I GTCTC 1 cut(s) 725
AlwI GGATC 2 cut(s) 433, 446
AlwNI CAGNNNCTG 2 cut(s) 83, 140
Ama87I CYCGRG 2 cut(s) 112, 631
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 4 cut(s) 199, 410, 694, 1022
ApaI GGGCCC 1 cut(s) 698
ApeKI GCWGC 4 cut(s) 77, 340, 494, 1058
ApoI RAATTY 2 cut(s) 103, 662
Asp700I GAANNNNTTC 1 cut(s) 961
AspS9I GGNCC 5 cut(s) 109, 200, 614, 694, 695
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 6 cut(s) 155, 362, 412, 535, 590, 996
AvaI CYCGRG 2 cut(s) 112, 631
AvaII GGWCC 2 cut(s) 109, 614
BaeGI GKGCMC 1 cut(s) 698
BamHI GGATCC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 698, 1073
BbvI GCAGC 4 cut(s) 89, 352, 481, 1045
BceAI ACGGC 3 cut(s) 691, 710, 1037
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 2 cut(s) 414, 888
BfmI CTRYAG 2 cut(s) 156, 843
BfrI CTTAAG 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 6 cut(s) 78, 319, 341, 495, 679, 1059
BlsI GCNGC 6 cut(s) 79, 320, 342, 496, 680, 1060
BmcAI AGTACT 3 cut(s) 193, 427, 916
Bme1390I CCNGG 2 cut(s) 362, 443
Bme18I GGWCC 2 cut(s) 109, 614
BmeT110I CYCGRG 2 cut(s) 112, 631
BmgT120I GGNCC 5 cut(s) 109, 200, 614, 694, 695
BmiI GGNNCC 3 cut(s) 111, 440, 696
BmrFI CCNGG 2 cut(s) 362, 443
BmsI GCATC 2 cut(s) 161, 1070
Bpu10I CCTNAGC 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 1013
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 2 cut(s) 229, 373
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 467, 694, 854
BseLI CCNNNNNNNGG 2 cut(s) 646, 1013
BseMI GCAATG 2 cut(s) 229, 373
BseMII CTCAG 3 cut(s) 327, 959, 1079
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 4 cut(s) 89, 352, 481, 1045
BseYI CCCAGC 1 cut(s) 827
BshFI GGCC 4 cut(s) 201, 412, 696, 1024
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 112, 631
BsiSI CCGG 2 cut(s) 443, 647
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 646, 1013
BsmAI GTCTC 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 4 cut(s) 201, 412, 696, 1024
BsoBI CYCGRG 2 cut(s) 112, 631
Bsp120I GGGCCC 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 698, 1073
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 3 cut(s) 318, 678, 797
BspANI GGCC 4 cut(s) 201, 412, 696, 1024
BspCNI CTCAG 3 cut(s) 328, 960, 1078
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 111, 440, 696
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 2 cut(s) 433, 446
BspTI CTTAAG 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 229, 373
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 130, 555
Bst6I CTCTTC 2 cut(s) 285, 1006
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 3 cut(s) 75, 160, 274
BstDEI CTNAG 6 cut(s) 284, 330, 336, 393, 968, 1065
BstF5I GGATG 3 cut(s) 467, 694, 854
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 394, 418, 816, 1105, 1122
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 360, 441
BstSFI CTRYAG 2 cut(s) 156, 843
BstSLI GKGCMC 1 cut(s) 698
BstV1I GCAGC 4 cut(s) 89, 352, 481, 1045
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 201, 412, 696, 1024
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 3 cut(s) 467, 694, 854
BtsIMutI CAGTG 2 cut(s) 861, 965
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 75, 160, 274
CaiI CAGNNNCTG 2 cut(s) 83, 140
Cfr13I GGNCC 5 cut(s) 109, 200, 614, 694, 695
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 820
Csp6I GTAC 5 cut(s) 192, 288, 426, 433, 915
CviAII CATG 3 cut(s) 535, 607, 899
CviQI GTAC 5 cut(s) 192, 288, 426, 433, 915
DdeI CTNAG 6 cut(s) 284, 330, 336, 393, 968, 1065
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 1022
Eam1104I CTCTTC 2 cut(s) 285, 1006
EarI CTCTTC 2 cut(s) 285, 1006
EciI GGCGGA 1 cut(s) 812
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 2 cut(s) 698, 1073
Eco47I GGWCC 2 cut(s) 109, 614
Eco57I CTGAAG 2 cut(s) 45, 735
Eco88I CYCGRG 2 cut(s) 112, 631
EcoO109I RGGNCCY 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 698, 1073
FaeI CATG 3 cut(s) 538, 610, 902
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 534, 606, 898
Fnu4HI GCNGC 6 cut(s) 78, 319, 341, 495, 679, 1059
FokI GGATG 3 cut(s) 454, 701, 841
FriOI GRGCYC 2 cut(s) 698, 1073
Fsp4HI GCNGC 6 cut(s) 78, 319, 341, 495, 679, 1059
FspBI CTAG 2 cut(s) 414, 888
GluI GCNGC 6 cut(s) 78, 319, 341, 495, 679, 1059
GsaI CCCAGC 1 cut(s) 831
HaeIII GGCC 4 cut(s) 201, 412, 696, 1024
HapII CCGG 2 cut(s) 443, 647
HgaI GACGC 1 cut(s) 820
Hin1II CATG 3 cut(s) 538, 610, 902
HinfI GANTC 4 cut(s) 5, 259, 371, 506
HpaII CCGG 2 cut(s) 443, 647
HphI GGTGA 6 cut(s) 155, 362, 412, 535, 590, 996
Hpy166II GTNNAC 1 cut(s) 965
Hpy188I TCNGA 9 cut(s) 64, 109, 126, 241, 525, 705, 836, 907, 1068
Hpy188III TCNNGA 3 cut(s) 206, 631, 647
Hpy8I GTNNAC 1 cut(s) 965
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 130, 555
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 7 cut(s) 73, 152, 158, 188, 254, 929, 1061
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 418, 816, 1105, 1122
HpyF3I CTNAG 6 cut(s) 284, 330, 336, 393, 968, 1065
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 3 cut(s) 538, 610, 902
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 1 cut(s) 438
Lsp1109I GCAGC 4 cut(s) 89, 352, 481, 1045
LweI GCATC 2 cut(s) 161, 1070
MaeI CTAG 2 cut(s) 414, 888
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 5 cut(s) 130, 530, 635, 709, 1133
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 5 cut(s) 30, 51, 272, 783, 1023
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 698, 1073
MluCI AATT 4 cut(s) 103, 662, 682, 756
MlyI GAGTC 1 cut(s) 253
MroI TCCGGA 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 961
MseI TTAA 4 cut(s) 119, 170, 345, 1095
MslI CAYNNNNRTG 1 cut(s) 524
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 2 cut(s) 443, 647
MspR9I CCNGG 2 cut(s) 362, 443
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 5 cut(s) 394, 418, 816, 1105, 1122
NciI CCSGG 1 cut(s) 443
NdeII GATC 1 cut(s) 438
NlaIII CATG 3 cut(s) 538, 610, 902
NlaIV GGNNCC 3 cut(s) 111, 440, 696
NmeAIII GCCGAG 1 cut(s) 447
NspI RCATGY 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 388
PceI AGGCCT 1 cut(s) 412
PciI ACATGT 1 cut(s) 606
PctI GAATGC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 3 cut(s) 5, 371, 506
PflFI GACNNNGTC 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 6 cut(s) 79, 320, 342, 496, 680, 1060
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 606
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 827
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 111, 440, 696
PspOMI GGGCCC 1 cut(s) 694
PspPI GGNCC 5 cut(s) 109, 200, 614, 694, 695
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 2 cut(s) 83, 140
PsuI RGATCY 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 262
RsaI GTAC 5 cut(s) 193, 289, 427, 434, 916
RsaNI GTAC 5 cut(s) 192, 288, 426, 433, 915
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 4 cut(s) 119, 170, 345, 1095
SatI GCNGC 6 cut(s) 78, 319, 341, 495, 679, 1059
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 5 cut(s) 109, 200, 614, 694, 695
ScaI AGTACT 3 cut(s) 193, 427, 916
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 362, 443
SduI GDGCHC 2 cut(s) 698, 1073
SfaNI GCATC 2 cut(s) 161, 1070
SfcI CTRYAG 2 cut(s) 156, 843
Sfr274I CTCGAG 1 cut(s) 631
SinI GGWCC 2 cut(s) 109, 614
SlaI CTCGAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 169, 631
SmoI CTYRAG 2 cut(s) 169, 631
Sse9I AATT 4 cut(s) 103, 662, 682, 756
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 3 cut(s) 318, 678, 797
SspMI CTAG 2 cut(s) 414, 888
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 360, 441
TaaI ACNGT 2 cut(s) 130, 555
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 300, 323, 632
TasI AATT 4 cut(s) 103, 662, 682, 756
TatI WGTACW 4 cut(s) 191, 287, 425, 914
TauI GCSGC 2 cut(s) 321, 681
TfiI GAWTC 3 cut(s) 5, 371, 506
Tru1I TTAA 4 cut(s) 119, 170, 345, 1095
Tru9I TTAA 4 cut(s) 119, 170, 345, 1095
TscAI CASTG 2 cut(s) 868, 972
TseI GCWGC 4 cut(s) 77, 340, 494, 1058
TspDTI ATGAA 2 cut(s) 519, 866
TspGWI ACGGA 2 cut(s) 252, 420
TspRI CASTG 2 cut(s) 868, 972
Tth111I GACNNNGTC 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 109, 614
XapI RAATTY 2 cut(s) 103, 662
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 2 cut(s) 414, 888
ZrmI AGTACT 3 cut(s) 193, 427, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.