RchiOBHm_Chr7g0183151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010088
Physical Location & Seq
Forward (+)
4151690 .. 4153955
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16339

Sequence Viewer

Length: 1143 bp
ATGGAATCTGCGAATGAGAAAATAACGTCAAGCCCATCTTCCTCCCCATTACCATCATCTTCAGACCATTTGCAAGCAGCCCCTGAAAGCAAAGGCATAGGGAATTCGGACCCGAGATTAAATCAGACAGATACAGGTGCTGGTGAGATTGCATCTGCAGGCAAAGGCTTAAGCCCCAAGACCCCTGCAAGTACTTCTGGCCCTCTGGAAGTTGATGTGGGCAATGTTGTAGCTACTTCGGAAAATGGTCTTGCAACGACTCCGTCCCCTGCTGGCTCTCTTCTAAGTACAAGCTACATCGATGAGGATTTTCAAGGCGGCTCGACACCTAAGACTGAGCAGCTTAATGGTGAGTTGAGCCAGGGCAATGATTCAGCAACACAATCGCCTCCTAAGCAGGTGATGGAGCGGCCTAGTGAGCCGAGTACTCCGTACAGGATCCCGGATTATGTCTTTGCGAGGAAACCATCCACAGCCCCGATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACCAGAGAACAGTTTGCCTTTTTAGGTAAATCTGGTGAGTTGGGTTTATCTGGAGAACAGAACATGTTGTCCGGTCCATATATAGACTTCTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAATTTTCCCAAAACGGCGGCAATTTGGATGAGGGCCCAAATCCGAGAGTAACTGAAGCAAAAGCCGTAGAGACCATGAGAGAGGTTATAAGGGAAATTGCCGAAAATGACAACAAAGCAAGTCCATCATCTTCGGCGGATAATCACAGCAAAGGAAGCCCGTCGCCCAGCGTCCGAAATCCTATAGTCAGCCCATCCCTCACTGAACACAAGTTTCATAACATATCTAGCCTTTCTCATGCTTCTGATGGAAGTACTAAATCATTTGCATTTCCAGTATTGGCAGGCGAGGAGAGAAGTGGTTCACTGAGGGTAGATGGAGTAGGGAAGCAAAAGCAACATTCACCACGAAGAGGCTCACGGCCACAAACACCTAAAGAAAGCAGAAAGCCGATTGCTGCATCTCAGAGCCCGAAATCAGCCCTGACCCCGATTAAGCACAAATGGCTACCTTGCTCTTGTTGCCCATTTTGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

40.18

Weight (kDa)

5.74

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 752
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccBSI CCGCTC 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 4 cut(s) 318, 409, 681, 800
AclWI GGATC 2 cut(s) 433, 446
AcoI YGGCCR 1 cut(s) 1025
AcsI RAATTY 2 cut(s) 103, 665
AcuI CTGAAG 2 cut(s) 45, 738
AfaI GTAC 5 cut(s) 193, 289, 427, 434, 919
AfiI CCNNNNNNNGG 2 cut(s) 649, 1016
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 2 cut(s) 314, 665
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 3 cut(s) 233, 294, 343
AluI AGCT 3 cut(s) 233, 294, 343
Alw26I GTCTC 1 cut(s) 728
AlwI GGATC 2 cut(s) 433, 446
AlwNI CAGNNNCTG 2 cut(s) 83, 140
Ama87I CYCGRG 2 cut(s) 112, 634
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 4 cut(s) 199, 410, 697, 1025
ApaI GGGCCC 1 cut(s) 701
ApeKI GCWGC 4 cut(s) 77, 340, 494, 1061
ApoI RAATTY 2 cut(s) 103, 665
Asp700I GAANNNNTTC 1 cut(s) 964
AspS9I GGNCC 5 cut(s) 109, 200, 617, 697, 698
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 6 cut(s) 155, 362, 412, 535, 590, 999
AvaI CYCGRG 2 cut(s) 112, 634
AvaII GGWCC 2 cut(s) 109, 617
BaeGI GKGCMC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 701, 1076
BbvI GCAGC 4 cut(s) 89, 352, 481, 1048
BceAI ACGGC 3 cut(s) 694, 713, 1040
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 2 cut(s) 414, 891
BfmI CTRYAG 2 cut(s) 156, 846
BfrI CTTAAG 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 7 cut(s) 78, 319, 341, 410, 495, 682, 1062
BlsI GCNGC 7 cut(s) 79, 320, 342, 411, 496, 683, 1063
BmcAI AGTACT 3 cut(s) 193, 427, 919
Bme1390I CCNGG 2 cut(s) 362, 443
Bme18I GGWCC 2 cut(s) 109, 617
BmeT110I CYCGRG 2 cut(s) 112, 634
BmgT120I GGNCC 5 cut(s) 109, 200, 617, 697, 698
BmiI GGNNCC 3 cut(s) 111, 440, 699
BmrFI CCNGG 2 cut(s) 362, 443
BmsI GCATC 2 cut(s) 161, 1073
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 2 cut(s) 614, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 1016
Bse1I ACTGG 1 cut(s) 938
Bse3DI GCAATG 2 cut(s) 229, 373
BseAI TCCGGA 1 cut(s) 649
BseBI CCWGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 467, 697, 857
BseLI CCNNNNNNNGG 2 cut(s) 649, 1016
BseMI GCAATG 2 cut(s) 229, 373
BseMII CTCAG 3 cut(s) 327, 962, 1082
BseNI ACTGG 1 cut(s) 938
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 4 cut(s) 89, 352, 481, 1048
BseYI CCCAGC 1 cut(s) 830
BshFI GGCC 4 cut(s) 201, 412, 699, 1027
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 112, 634
BsiSI CCGG 3 cut(s) 443, 615, 650
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 649, 1016
BsmAI GTCTC 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 4 cut(s) 201, 412, 699, 1027
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 2 cut(s) 112, 634
Bsp120I GGGCCC 1 cut(s) 697
Bsp1286I GDGCHC 2 cut(s) 701, 1076
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 4 cut(s) 318, 409, 681, 800
BspANI GGCC 4 cut(s) 201, 412, 699, 1027
BspCNI CTCAG 3 cut(s) 328, 963, 1081
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 649
BspLI GGNNCC 3 cut(s) 111, 440, 699
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 2 cut(s) 433, 446
BspTI CTTAAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 728
BsrBI CCGCTC 1 cut(s) 409
BsrDI GCAATG 2 cut(s) 229, 373
BsrI ACTGG 1 cut(s) 938
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 2 cut(s) 285, 1009
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 4 cut(s) 75, 160, 274, 949
BstDEI CTNAG 6 cut(s) 284, 330, 336, 393, 971, 1068
BstF5I GGATG 3 cut(s) 467, 697, 857
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 394, 418, 819, 1108, 1125
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 360, 441
BstSFI CTRYAG 2 cut(s) 156, 846
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 89, 352, 481, 1048
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 201, 412, 699, 1027
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 3 cut(s) 467, 697, 857
BtsIMutI CAGTG 2 cut(s) 864, 968
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 75, 160, 274, 949
CaiI CAGNNNCTG 2 cut(s) 83, 140
Cfr13I GGNCC 5 cut(s) 109, 200, 617, 697, 698
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 823
Csp6I GTAC 5 cut(s) 192, 288, 426, 433, 918
CviAII CATG 4 cut(s) 535, 607, 739, 902
CviQI GTAC 5 cut(s) 192, 288, 426, 433, 918
DdeI CTNAG 6 cut(s) 284, 330, 336, 393, 971, 1068
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 1025
Eam1104I CTCTTC 2 cut(s) 285, 1009
EarI CTCTTC 2 cut(s) 285, 1009
EciI GGCGGA 1 cut(s) 815
Eco24I GRGCYC 2 cut(s) 701, 1076
Eco31I GGTCTC 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 109, 617
Eco57I CTGAAG 2 cut(s) 45, 738
Eco88I CYCGRG 2 cut(s) 112, 634
EcoO109I RGGNCCY 1 cut(s) 697
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 701, 1076
FaeI CATG 4 cut(s) 538, 610, 742, 905
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 250
FatI CATG 4 cut(s) 534, 606, 738, 901
Fnu4HI GCNGC 7 cut(s) 78, 319, 341, 410, 495, 682, 1062
FokI GGATG 3 cut(s) 454, 704, 844
FriOI GRGCYC 2 cut(s) 701, 1076
Fsp4HI GCNGC 7 cut(s) 78, 319, 341, 410, 495, 682, 1062
FspBI CTAG 2 cut(s) 414, 891
GluI GCNGC 7 cut(s) 78, 319, 341, 410, 495, 682, 1062
GsaI CCCAGC 1 cut(s) 834
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 4 cut(s) 201, 412, 699, 1027
HapII CCGG 3 cut(s) 443, 615, 650
HgaI GACGC 1 cut(s) 823
Hin1II CATG 4 cut(s) 538, 610, 742, 905
HinfI GANTC 4 cut(s) 5, 259, 371, 506
HpaII CCGG 3 cut(s) 443, 615, 650
HphI GGTGA 6 cut(s) 155, 362, 412, 535, 590, 999
Hpy166II GTNNAC 1 cut(s) 968
Hpy188I TCNGA 9 cut(s) 64, 109, 126, 241, 525, 708, 839, 910, 1071
Hpy188III TCNNGA 4 cut(s) 206, 594, 634, 650
Hpy8I GTNNAC 1 cut(s) 968
Hpy99I CGWCG 1 cut(s) 829
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 7 cut(s) 73, 152, 158, 188, 254, 932, 1064
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 418, 819, 1108, 1125
HpyF3I CTNAG 6 cut(s) 284, 330, 336, 393, 971, 1068
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 4 cut(s) 538, 610, 742, 905
Kpn2I TCCGGA 1 cut(s) 649
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 4 cut(s) 89, 352, 481, 1048
LweI GCATC 2 cut(s) 161, 1073
MaeI CTAG 2 cut(s) 414, 891
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 4 cut(s) 530, 638, 712, 1136
MalI GATC 1 cut(s) 440
MbiI CCGCTC 1 cut(s) 409
MboI GATC 1 cut(s) 438
MboII GAAGA 5 cut(s) 30, 51, 272, 786, 1026
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 701, 1076
MluCI AATT 4 cut(s) 103, 665, 685, 759
MlyI GAGTC 1 cut(s) 253
MroI TCCGGA 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 964
MseI TTAA 4 cut(s) 119, 170, 345, 1098
MslI CAYNNNNRTG 1 cut(s) 524
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 3 cut(s) 443, 615, 650
MspR9I CCNGG 2 cut(s) 362, 443
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 5 cut(s) 394, 418, 819, 1108, 1125
NciI CCSGG 1 cut(s) 443
NdeII GATC 1 cut(s) 438
NlaIII CATG 4 cut(s) 538, 610, 742, 905
NlaIV GGNNCC 3 cut(s) 111, 440, 699
NmeAIII GCCGAG 1 cut(s) 447
NspI RCATGY 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 388
PciI ACATGT 1 cut(s) 606
PctI GAATGC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 3 cut(s) 5, 371, 506
PflFI GACNNNGTC 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 7 cut(s) 79, 320, 342, 411, 496, 683, 1063
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 606
PsiI TTATAA 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 111, 440, 699
PspOMI GGGCCC 1 cut(s) 697
PspPI GGNCC 5 cut(s) 109, 200, 617, 697, 698
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 2 cut(s) 83, 140
PsuI RGATCY 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 262
RsaI GTAC 5 cut(s) 193, 289, 427, 434, 919
RsaNI GTAC 5 cut(s) 192, 288, 426, 433, 918
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 4 cut(s) 119, 170, 345, 1098
SatI GCNGC 7 cut(s) 78, 319, 341, 410, 495, 682, 1062
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 5 cut(s) 109, 200, 617, 697, 698
ScaI AGTACT 3 cut(s) 193, 427, 919
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 362, 443
SduI GDGCHC 2 cut(s) 701, 1076
SfaNI GCATC 2 cut(s) 161, 1073
SfcI CTRYAG 2 cut(s) 156, 846
Sfr274I CTCGAG 1 cut(s) 634
SinI GGWCC 2 cut(s) 109, 617
SlaI CTCGAG 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 169, 634
SmoI CTYRAG 2 cut(s) 169, 634
Sse9I AATT 4 cut(s) 103, 665, 685, 759
SsiI CCGC 4 cut(s) 318, 409, 681, 800
SspMI CTAG 2 cut(s) 414, 891
StyD4I CCNGG 2 cut(s) 360, 441
TaaI ACNGT 1 cut(s) 555
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 300, 323, 635
TasI AATT 4 cut(s) 103, 665, 685, 759
TatI WGTACW 4 cut(s) 191, 287, 425, 917
TauI GCSGC 3 cut(s) 321, 412, 684
TfiI GAWTC 3 cut(s) 5, 371, 506
Tru1I TTAA 4 cut(s) 119, 170, 345, 1098
Tru9I TTAA 4 cut(s) 119, 170, 345, 1098
TscAI CASTG 2 cut(s) 871, 975
TseI GCWGC 4 cut(s) 77, 340, 494, 1061
TspDTI ATGAA 2 cut(s) 519, 869
TspGWI ACGGA 2 cut(s) 252, 420
TspRI CASTG 2 cut(s) 871, 975
Tth111I GACNNNGTC 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 109, 617
XapI RAATTY 2 cut(s) 103, 665
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 2 cut(s) 414, 891
ZrmI AGTACT 3 cut(s) 193, 427, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.