Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Reverse (-)

64828824 .. 64832474

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAATCTGTGAATGGGAAAATAACGTCAAGCCCATCTTCCTCCCCATTACCATCATCTTCGGACCATTTGCAAGCAGCCCCCGGAAGCAAAGGCATAGGGAATTTGGATCCAAGTTTAAATCAGACAGTTACAGGTCCTGGTGAGATTGCATCTGCAGGCAAAGGCTTAAGTCCCAAGACCCCCGCAAGTACTTCTGGCCCTTTGGAAGTTGATGTGGGCAATGTTGTAGCAACTTCGGAAAATGGTCTCGCAACAACTCCATCCCCCGCTGGCTCTCTTCTAAGTACAAGCTACACCGATGAGGATTTTCAAGGCAGCTCGACACCTAAGACTGAGCAGCTTAATGGTGAGTTGAGCCAGGGCAATGATTCAGCAACACAATCGCCTCCTACGCAGGTGATGGAGCGGCCCAGTGAGCCGAGTACTCCGTACAGGATCCCGGATTATGTCTTTGCGAGGAAACCATCCACAGCCCCGATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACTAGAGAACAGTTTGCCTTTTTAGGTAAATCTGGTGAATTGGGTTTATCTGGAGAACAGAACATGTCTGGTCCATATATAGACTTCTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAATTTTCCCAAAACGGCGGCAATTTGGATGAGGGCGCAAATCCGAGAGTAACTGAAGCAAAAGCCGTAGAGACTATGAGAGAGGTTATAAGGGAAATTGCCGAAAATGACAACAAAGCAAGTCCATCATCTTCGGCGGATAATCACAGCAAAGGAAGCCTGTCGCCCAACGTCCGAAATCCTATAGTCAGCCCATCCCTCACTGAACACAAGTTTCATAATATATCTAGCCTTTCTCATGCTTCTGATGGAAGTACTAAATCATTTGCATTTCCAGTATTGTCAGGTGAGGAGAGAAGTGGTTCACTGAGGGTAGATGGAGTAGGGAAGCAAAAGCCACATTCGCCACGAAGAGGCTCACGGCCACAAACACCTAAAGAAAGCAGGAAGCCGAATGCTACATCTCAGACCCCGAAATCTGCCCTGACCCCGATTAAGCACAAATGGCTATCTTGCTCTTGTTGCCCATTCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

39.95

Weight (kDa)

5.87

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	5 cut(s)	186, 270, 409, 678, 797
AclWI	GGATC	4 cut(s)	104, 117, 433, 446
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	2 cut(s)	103, 662
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	5 cut(s)	193, 289, 427, 434, 916
AfiI	CCNNNNNNNGG	2 cut(s)	646, 1013
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	314, 662
AjnI	CCWGG	2 cut(s)	139, 360
AluBI	AGCT	3 cut(s)	294, 321, 343
AluI	AGCT	3 cut(s)	294, 321, 343
Alw26I	GTCTC	2 cut(s)	254, 725
AlwI	GGATC	4 cut(s)	104, 117, 433, 446
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	3 cut(s)	199, 410, 1022
ApeKI	GCWGC	4 cut(s)	77, 318, 340, 494
ApoI	RAATTY	2 cut(s)	103, 662
Asp700I	GAANNNNTTC	1 cut(s)	961
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	5 cut(s)	64, 137, 200, 411, 614
AsuC2I	CCSGG	2 cut(s)	84, 443
AsuHPI	GGTGA	5 cut(s)	155, 362, 412, 590, 959
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	3 cut(s)	64, 137, 614
BamHI	GGATCC	2 cut(s)	109, 438
BbvI	GCAGC	4 cut(s)	89, 330, 352, 481
BceAI	ACGGC	3 cut(s)	691, 710, 1037
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	2 cut(s)	141, 362
BcnI	CCSGG	2 cut(s)	84, 443
BcoDI	GTCTC	2 cut(s)	254, 725
BfaI	CTAG	2 cut(s)	546, 888
BfmI	CTRYAG	2 cut(s)	156, 843
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
BlsI	GCNGC	6 cut(s)	79, 320, 342, 411, 496, 680
BmcAI	AGTACT	3 cut(s)	193, 427, 916
Bme1390I	CCNGG	4 cut(s)	84, 141, 362, 443
Bme18I	GGWCC	3 cut(s)	64, 137, 614
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	5 cut(s)	64, 137, 200, 411, 614
BmiI	GGNNCC	2 cut(s)	111, 440
BmrFI	CCNGG	4 cut(s)	84, 141, 362, 443
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	2 cut(s)	84, 443
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	82, 361
BsaWI	WCCGGW	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	2 cut(s)	646, 1013
Bse1I	ACTGG	2 cut(s)	414, 935
Bse3DI	GCAATG	2 cut(s)	229, 373
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	2 cut(s)	141, 362
BseDI	CCNNGG	2 cut(s)	82, 361
BseGI	GGATG	4 cut(s)	263, 467, 694, 854
BseLI	CCNNNNNNNGG	2 cut(s)	646, 1013
BseMI	GCAATG	2 cut(s)	229, 373
BseMII	CTCAG	3 cut(s)	327, 959, 1079
BseNI	ACTGG	2 cut(s)	414, 935
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	4 cut(s)	89, 330, 352, 481
BshFI	GGCC	3 cut(s)	201, 412, 1024
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	84, 443, 647
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	646, 1013
BsmAI	GTCTC	2 cut(s)	254, 725
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	2 cut(s)	519, 1060
BsnI	GGCC	3 cut(s)	201, 412, 1024
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	631
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	2 cut(s)	109, 438
BspACI	CCGC	5 cut(s)	186, 270, 409, 678, 797
BspANI	GGCC	3 cut(s)	201, 412, 1024
BspCNI	CTCAG	3 cut(s)	328, 960, 1078
BspEI	TCCGGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	111, 440
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	4 cut(s)	104, 117, 433, 446
BspTI	CTTAAG	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	229, 373
BsrI	ACTGG	2 cut(s)	414, 935
BssECI	CCNNGG	2 cut(s)	82, 361
BssMI	GATC	2 cut(s)	109, 438
Bst2UI	CCWGG	2 cut(s)	141, 362
Bst4CI	ACNGT	2 cut(s)	130, 555
Bst6I	CTCTTC	2 cut(s)	285, 1006
BstAFI	CTTAAG	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	75, 160, 274
BstDEI	CTNAG	5 cut(s)	284, 330, 336, 968, 1065
BstF5I	GGATG	4 cut(s)	263, 467, 694, 854
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	2 cut(s)	112, 441
BstMAI	GTCTC	2 cut(s)	254, 725
BstMBI	GATC	2 cut(s)	109, 438
BstMWI	GCNNNNNNNGC	6 cut(s)	394, 418, 816, 1003, 1105, 1122
BstNI	CCWGG	2 cut(s)	141, 362
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	4 cut(s)	82, 139, 360, 441
BstSFI	CTRYAG	2 cut(s)	156, 843
BstV1I	GCAGC	4 cut(s)	89, 330, 352, 481
BstX2I	RGATCY	2 cut(s)	109, 438
BstYI	RGATCY	2 cut(s)	109, 438
BsuRI	GGCC	3 cut(s)	201, 412, 1024
BtsCI	GGATG	4 cut(s)	263, 467, 694, 854
BtsIMutI	CAGTG	3 cut(s)	421, 861, 965
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	75, 160, 274
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	5 cut(s)	64, 137, 200, 411, 614
Csp6I	GTAC	5 cut(s)	192, 288, 426, 433, 915
CviAII	CATG	3 cut(s)	535, 607, 899
CviQI	GTAC	5 cut(s)	192, 288, 426, 433, 915
DdeI	CTNAG	5 cut(s)	284, 330, 336, 968, 1065
DpnI	GATC	2 cut(s)	111, 440
DpnII	GATC	2 cut(s)	109, 438
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	2 cut(s)	285, 1006
EarI	CTCTTC	2 cut(s)	285, 1006
EciI	GGCGGA	1 cut(s)	812
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	64, 137, 614
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	139, 360
FaeI	CATG	3 cut(s)	538, 610, 902
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	3 cut(s)	534, 606, 898
FauI	CCCGC	2 cut(s)	193, 277
Fnu4HI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
FokI	GGATG	4 cut(s)	250, 454, 701, 841
Fsp4HI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
FspBI	CTAG	2 cut(s)	546, 888
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	201, 412, 1024
HapII	CCGG	3 cut(s)	84, 443, 647
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	3 cut(s)	538, 610, 902
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HinfI	GANTC	3 cut(s)	5, 371, 506
HpaII	CCGG	3 cut(s)	84, 443, 647
HphI	GGTGA	5 cut(s)	155, 362, 412, 590, 959
Hpy166II	GTNNAC	1 cut(s)	965
Hpy188I	TCNGA	8 cut(s)	64, 126, 241, 525, 705, 836, 907, 1068
Hpy188III	TCNNGA	3 cut(s)	594, 631, 647
Hpy8I	GTNNAC	1 cut(s)	965
HpyCH4III	ACNGT	2 cut(s)	130, 555
HpyCH4IV	ACGT	2 cut(s)	26, 831
HpyCH4V	TGCA	4 cut(s)	73, 152, 158, 929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	394, 418, 816, 1003, 1105, 1122
HpyF3I	CTNAG	5 cut(s)	284, 330, 336, 968, 1065
HpySE526I	ACGT	2 cut(s)	26, 831
Hsp92II	CATG	3 cut(s)	538, 610, 902
HspAI	GCGC	1 cut(s)	696
Kpn2I	TCCGGA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	109, 438
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	4 cut(s)	89, 330, 352, 481
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	546, 888
MaeII	ACGT	2 cut(s)	26, 831
MaeIII	GTNAC	5 cut(s)	130, 530, 635, 709, 1133
MalI	GATC	2 cut(s)	111, 440
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	2 cut(s)	109, 438
MboII	GAAGA	5 cut(s)	30, 51, 272, 783, 1023
MflI	RGATCY	2 cut(s)	109, 438
MluCI	AATT	5 cut(s)	103, 581, 662, 682, 756
MroI	TCCGGA	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	961
MseI	TTAA	4 cut(s)	119, 170, 345, 1095
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	3 cut(s)	84, 443, 647
MspR9I	CCNGG	4 cut(s)	84, 141, 362, 443
Mva1269I	GAATGC	2 cut(s)	519, 1060
MvaI	CCWGG	2 cut(s)	141, 362
MwoI	GCNNNNNNNGC	6 cut(s)	394, 418, 816, 1003, 1105, 1122
NciI	CCSGG	2 cut(s)	84, 443
NdeII	GATC	2 cut(s)	109, 438
NlaIII	CATG	3 cut(s)	538, 610, 902
NlaIV	GGNNCC	2 cut(s)	111, 440
NmeAIII	GCCGAG	1 cut(s)	447
NspI	RCATGY	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	2 cut(s)	519, 1060
PdmI	GAANNNNTTC	1 cut(s)	961
PfeI	GAWTC	3 cut(s)	5, 371, 506
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	6 cut(s)	79, 320, 342, 411, 496, 680
PpuMI	RGGWCCY	1 cut(s)	137
PscI	ACATGT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	139, 360
PspGI	CCWGG	2 cut(s)	139, 360
PspN4I	GGNNCC	2 cut(s)	111, 440
PspPI	GGNCC	5 cut(s)	64, 137, 200, 411, 614
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	109, 438
RsaI	GTAC	5 cut(s)	193, 289, 427, 434, 916
RsaNI	GTAC	5 cut(s)	192, 288, 426, 433, 915
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	119, 170, 345, 1095
SatI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
Sau3AI	GATC	2 cut(s)	109, 438
Sau96I	GGNCC	5 cut(s)	64, 137, 200, 411, 614
ScaI	AGTACT	3 cut(s)	193, 427, 916
ScrFI	CCNGG	4 cut(s)	84, 141, 362, 443
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	2 cut(s)	156, 843
Sfr274I	CTCGAG	1 cut(s)	631
SinI	GGWCC	3 cut(s)	64, 137, 614
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	169, 631
SmoI	CTYRAG	2 cut(s)	169, 631
Sse9I	AATT	5 cut(s)	103, 581, 662, 682, 756
SsiI	CCGC	5 cut(s)	186, 270, 409, 678, 797
SspMI	CTAG	2 cut(s)	546, 888
StyD4I	CCNGG	4 cut(s)	82, 139, 360, 441
TaaI	ACNGT	2 cut(s)	130, 555
TaiI	ACGT	2 cut(s)	29, 834
TaqI	TCGA	2 cut(s)	323, 632
TasI	AATT	5 cut(s)	103, 581, 662, 682, 756
TatI	WGTACW	4 cut(s)	191, 287, 425, 914
TauI	GCSGC	2 cut(s)	412, 681
TfiI	GAWTC	3 cut(s)	5, 371, 506
Tru1I	TTAA	4 cut(s)	119, 170, 345, 1095
Tru9I	TTAA	4 cut(s)	119, 170, 345, 1095
TscAI	CASTG	3 cut(s)	421, 868, 972
TseI	GCWGC	4 cut(s)	77, 318, 340, 494
TspDTI	ATGAA	2 cut(s)	519, 866
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	3 cut(s)	421, 868, 972
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	3 cut(s)	64, 137, 614
XapI	RAATTY	2 cut(s)	103, 662
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	961
XspI	CTAG	2 cut(s)	546, 888
ZrmI	AGTACT	3 cut(s)	193, 427, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.