Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

29715837 .. 29719413

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1212300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAATCTGCAGATGATAGAACAAGGTTAAGCCCTGTAGCTACAACTCCATGTGAAGTTGATACCGCGGCCAAAGGATTAGGCAGCGGATCAGGCGGATTAGGCTTGTCCGATCAGTTGAATGAGTTGAGGACGGATCCAATTACCGCTCTAGGAGAAGCTAATATTTCTACTGTAGGAGAAAGTTTAAGTAACTCTCAGGTATCTGATTGTAATGAAGCCTTTGAATTGGGTGCAAATGCAACCAGTGCCGAGGATTTTGCTGCCTGCGCGGCCACAGATGCTTCGCAGAATGTGCAACCTAGTGATAGACTAGAAGGATCACATTCTCAACCAGCAGATGATGCAAACGATTCAGCAACACAGTCTCCGCCTACGCAGATGATGGAGCGGCCAGGCGACCCTGCCTCCTCACCGTATAGGATTCCAGATTATGTGTTTGCTAGGAACAAATCAACAGCCCCATTGGAATGGAGCACTGAATCCAATGAGTCCTTGTTCAGCATTCAGATGGGAAATACGAGTTTTACCAAAGACCAGTTTAACTGGTTGTGTAAATCTGGTGAATTGGGTTTACCTGAGGTAAATTACTTGCCTGGTAGTCCATGCAACATTGACTTCACAAGCAACCAGCCTCCGGCTAAGCAAACGGCGCAATCAGCGGAGAATGCTTCCAATAAGTTAAGCACGGTGGTGGAGGAGCCGAGTCTGAGGGTAACAGAAGAGAAAGCTGCGGAAACCATGAGAGAAGTTCTAAGGGAAAATGCAGTGAATCATGAAAGAGAGAAGTCAACCACTGCCCGCGAGGGTGGCAAGTATCACTCGGCTCGCCTCTCTCATGCTTCGGATGGAAGTACAAGATCTTTTGCATTCCCAATATTGTTAGGGGACATAAATGTTTCGCTACGGGGAGAAGGAACGAGACACAAGCACCAATCGGGGTCAAAGCGAACGTCGCAGCGAGAATCGCAGCCGCAAATGCCGGAAGAAACACCGAATGCGTCGTCTCCGCCCTCAAAACCAACCCCAATTGTACCCAAGTGCGGCTGGGGGCTGTCTTGCTTCTCTTGTTGCCCATCATGCTGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

38.74

Weight (kDa)

4.83

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	149, 391
AccII	CGCG	3 cut(s)	68, 272, 804
AclWI	GGATC	4 cut(s)	97, 131, 144, 328
AcoI	YGGCCR	3 cut(s)	69, 273, 392
AfaI	GTAC	3 cut(s)	856, 1035, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	637, 1043
AgsI	TTSAA	2 cut(s)	121, 227
AjnI	CCWGG	2 cut(s)	394, 595
AleI	CACNNNNGTG	1 cut(s)	692
AluBI	AGCT	3 cut(s)	41, 161, 731
AluI	AGCT	3 cut(s)	41, 161, 731
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	372, 916, 1011
AlwI	GGATC	4 cut(s)	97, 131, 144, 328
AoxI	GGCC	3 cut(s)	69, 273, 392
ApeKI	GCWGC	5 cut(s)	84, 263, 731, 958, 970
ArsI	GACNNNNNNTTYG	4 cut(s)	938, 970, 989, 1021
AspLEI	GCGC	2 cut(s)	272, 655
AsuHPI	GGTGA	2 cut(s)	405, 575
AxyI	CCTNAGG	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	5 cut(s)	96, 250, 718, 970, 982
BccI	CCATC	4 cut(s)	379, 505, 842, 1084
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	396, 597
BcoDI	GTCTC	3 cut(s)	372, 916, 1011
BfaI	CTAG	4 cut(s)	152, 303, 314, 444
BfmI	CTRYAG	3 cut(s)	9, 36, 174
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	860
BlpI	GCTNAGC	1 cut(s)	642
Bme1390I	CCNGG	2 cut(s)	396, 597
BmiI	GGNNCC	2 cut(s)	138, 702
BmrFI	CCNGG	2 cut(s)	396, 597
BmsI	GCATC	2 cut(s)	271, 334
Bpu1102I	GCTNAGC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	66, 252
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 1043
Bse1I	ACTGG	3 cut(s)	246, 538, 551
Bse21I	CCTNAGG	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	396, 597
BseDI	CCNNGG	2 cut(s)	66, 252
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	2 cut(s)	637, 1043
BseMII	CTCAG	3 cut(s)	212, 570, 701
BseNI	ACTGG	3 cut(s)	246, 538, 551
BseRI	GAGGAG	2 cut(s)	400, 713
BseXI	GCAGC	5 cut(s)	96, 250, 718, 970, 982
BseYI	CCCAGC	1 cut(s)	1047
Bsh1236I	CGCG	3 cut(s)	68, 272, 804
BshFI	GGCC	3 cut(s)	71, 275, 394
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	638, 983
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	2 cut(s)	637, 1043
BsmAI	GTCTC	3 cut(s)	372, 916, 1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	1 cut(s)	902
BsmI	GAATGC	4 cut(s)	504, 673, 869, 1003
BsnI	GGCC	3 cut(s)	71, 275, 394
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	89, 112, 136, 320, 860
Bsp1720I	GCTNAGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	71, 275, 394
BspCNI	CTCAG	3 cut(s)	211, 571, 702
BspFNI	CGCG	3 cut(s)	68, 272, 804
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	2 cut(s)	138, 702
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	4 cut(s)	97, 131, 144, 328
BsrBI	CCGCTC	2 cut(s)	149, 391
BsrI	ACTGG	3 cut(s)	246, 538, 551
BssECI	CCNNGG	2 cut(s)	66, 252
BssMI	GATC	5 cut(s)	89, 112, 136, 320, 860
Bst2UI	CCWGG	2 cut(s)	396, 597
Bst4CI	ACNGT	4 cut(s)	175, 366, 417, 691
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	3 cut(s)	248, 295, 344
BstC8I	GCNNGC	3 cut(s)	268, 802, 829
BstDEI	CTNAG	6 cut(s)	198, 579, 642, 710, 755, 1089
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	3 cut(s)	68, 272, 804
BstHHI	GCGC	2 cut(s)	272, 655
BstKTI	GATC	5 cut(s)	92, 115, 139, 323, 863
BstMAI	GTCTC	3 cut(s)	372, 916, 1011
BstMBI	GATC	5 cut(s)	89, 112, 136, 320, 860
BstNI	CCWGG	2 cut(s)	396, 597
BstSCI	CCNGG	2 cut(s)	394, 595
BstSFI	CTRYAG	3 cut(s)	9, 36, 174
BstUI	CGCG	3 cut(s)	68, 272, 804
BstV1I	GCAGC	5 cut(s)	96, 250, 718, 970, 982
BstX2I	RGATCY	2 cut(s)	136, 860
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	2 cut(s)	136, 860
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	71, 275, 394
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	2 cut(s)	774, 795
BtsIMutI	CAGTG	4 cut(s)	253, 477, 774, 795
Cac8I	GCNNGC	3 cut(s)	268, 802, 829
CciI	TCATGA	1 cut(s)	775
CfoI	GCGC	2 cut(s)	272, 655
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	3 cut(s)	855, 1034, 1086
CviAII	CATG	6 cut(s)	51, 606, 742, 776, 839, 1080
CviQI	GTAC	3 cut(s)	855, 1034, 1086
DdeI	CTNAG	6 cut(s)	198, 579, 642, 710, 755, 1089
DpnI	GATC	5 cut(s)	91, 114, 138, 322, 862
DpnII	GATC	5 cut(s)	89, 112, 136, 320, 860
EaeI	YGGCCR	3 cut(s)	69, 273, 392
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	3 cut(s)	111, 360, 999
Eco81I	CCTNAGG	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	394, 595
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	6 cut(s)	54, 609, 745, 779, 842, 1083
FaiI	YATR	9 cut(s)	52, 420, 435, 607, 743, 777, 840, 893, 1081
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	6 cut(s)	50, 605, 741, 775, 838, 1079
FauI	CCCGC	1 cut(s)	809
FokI	GGATG	1 cut(s)	860
FspBI	CTAG	4 cut(s)	152, 303, 314, 444
GlaI	GCGC	2 cut(s)	271, 654
GsaI	CCCAGC	1 cut(s)	1051
HaeIII	GGCC	3 cut(s)	71, 275, 394
HapII	CCGG	2 cut(s)	638, 983
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	2 cut(s)	272, 655
Hin1II	CATG	6 cut(s)	54, 609, 745, 779, 842, 1083
Hin6I	GCGC	2 cut(s)	270, 653
HinP1I	GCGC	2 cut(s)	270, 653
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	8 cut(s)	5, 353, 424, 482, 491, 706, 772, 965
HpaII	CCGG	2 cut(s)	638, 983
HphI	GGTGA	2 cut(s)	405, 575
Hpy166II	GTNNAC	2 cut(s)	575, 792
Hpy188I	TCNGA	5 cut(s)	112, 208, 510, 711, 847
Hpy188III	TCNNGA	2 cut(s)	428, 776
Hpy8I	GTNNAC	2 cut(s)	575, 792
Hpy99I	CGWCG	2 cut(s)	958, 1006
HpyAV	CCTTC	2 cut(s)	311, 908
HpyCH4III	ACNGT	4 cut(s)	175, 366, 417, 691
HpyCH4IV	ACGT	1 cut(s)	953
HpyCH4V	TGCA	8 cut(s)	11, 236, 242, 298, 347, 609, 767, 869
HpyF3I	CTNAG	6 cut(s)	198, 579, 642, 710, 755, 1089
HpySE526I	ACGT	1 cut(s)	953
Hsp92II	CATG	6 cut(s)	54, 609, 745, 779, 842, 1083
HspAI	GCGC	2 cut(s)	270, 653
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	89, 112, 136, 320, 860
LmnI	GCTCC	3 cut(s)	388, 474, 700
Lsp1109I	GCAGC	5 cut(s)	96, 250, 718, 970, 982
LweI	GCATC	2 cut(s)	271, 334
MaeI	CTAG	4 cut(s)	152, 303, 314, 444
MaeII	ACGT	1 cut(s)	953
MaeIII	GTNAC	2 cut(s)	191, 715
MalI	GATC	5 cut(s)	91, 114, 138, 322, 862
MbiI	CCGCTC	2 cut(s)	149, 391
MboI	GATC	5 cut(s)	89, 112, 136, 320, 860
MboII	GAAGA	2 cut(s)	734, 998
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	2 cut(s)	136, 860
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	5 cut(s)	141, 227, 566, 586, 1029
MlyI	GAGTC	2 cut(s)	500, 715
MseI	TTAA	4 cut(s)	29, 188, 543, 683
MslI	CAYNNNNRTG	3 cut(s)	469, 509, 692
MspA1I	CMGCKG	3 cut(s)	68, 87, 662
MspI	CCGG	2 cut(s)	638, 983
MspR9I	CCNGG	2 cut(s)	396, 597
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	4 cut(s)	504, 673, 869, 1003
MvaI	CCWGG	2 cut(s)	396, 597
MvnI	CGCG	3 cut(s)	68, 272, 804
NdeII	GATC	5 cut(s)	89, 112, 136, 320, 860
NlaIII	CATG	6 cut(s)	54, 609, 745, 779, 842, 1083
NlaIV	GGNNCC	2 cut(s)	138, 702
NmeAIII	GCCGAG	3 cut(s)	277, 729, 803
OliI	CACNNNNGTG	1 cut(s)	692
PagI	TCATGA	1 cut(s)	775
PctI	GAATGC	4 cut(s)	504, 673, 869, 1003
PfeI	GAWTC	6 cut(s)	5, 353, 424, 482, 772, 965
PleI	GAGTC	2 cut(s)	499, 714
PpsI	GAGTC	2 cut(s)	499, 714
Psp6I	CCWGG	2 cut(s)	394, 595
PspFI	CCCAGC	1 cut(s)	1047
PspGI	CCWGG	2 cut(s)	394, 595
PspN4I	GGNNCC	2 cut(s)	138, 702
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	136, 860
RsaI	GTAC	3 cut(s)	856, 1035, 1087
RsaNI	GTAC	3 cut(s)	855, 1034, 1086
RseI	CAYNNNNRTG	3 cut(s)	469, 509, 692
SacII	CCGCGG	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	29, 188, 543, 683
Sau3AI	GATC	5 cut(s)	89, 112, 136, 320, 860
SchI	GAGTC	2 cut(s)	500, 715
ScrFI	CCNGG	2 cut(s)	396, 597
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	9 cut(s)	29, 43, 163, 204, 304, 580, 585, 733, 956
SfaNI	GCATC	2 cut(s)	271, 334
SfcI	CTRYAG	3 cut(s)	9, 36, 174
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SmiMI	CAYNNNNRTG	3 cut(s)	469, 509, 692
Sse9I	AATT	5 cut(s)	141, 227, 566, 586, 1029
SspI	AATATT	2 cut(s)	166, 879
SspMI	CTAG	4 cut(s)	152, 303, 314, 444
StyD4I	CCNGG	2 cut(s)	394, 595
TaaI	ACNGT	4 cut(s)	175, 366, 417, 691
TaiI	ACGT	1 cut(s)	956
TasI	AATT	5 cut(s)	141, 227, 566, 586, 1029
TatI	WGTACW	2 cut(s)	854, 1085
TauI	GCSGC	5 cut(s)	71, 275, 394, 976, 1047
TfiI	GAWTC	6 cut(s)	5, 353, 424, 482, 772, 965
Tru1I	TTAA	4 cut(s)	29, 188, 543, 683
Tru9I	TTAA	4 cut(s)	29, 188, 543, 683
TscAI	CASTG	4 cut(s)	253, 484, 774, 802
TseI	GCWGC	5 cut(s)	84, 263, 731, 958, 970
TspDTI	ATGAA	2 cut(s)	231, 792
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	4 cut(s)	253, 484, 774, 802
XspI	CTAG	4 cut(s)	152, 303, 314, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.