Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

19455724 .. 19459433

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTATGATTTTATGACGGTGTATGCGTGTTATCTTGCCATCATAGGTGGCCTTGGAGTTACTCTGATACTGTTAGCTGTGTATCAGAAAGCTTTGCCAGCTCTTCCCGTGTCAATAATGCTCGGCGTACTGTTTTATGTATTGACACGGCTCTTACTGGAAGTTTTCGTTGTACAATTCCAACACCTGCAAAGTTGGGAGAAGGGAGGATGCTGTATGGATCGGAGCCTCGGAGGAAGCCCGAACGTCTACATTTGTTTGTACCAAGAATATCAAATCTTCGATTGTTTGTTTCAGCTGGATTCAGTTGCATATCGAAAGGAATCCGATGGTTTTGGACTGCCGGAGGCAGAACCAAGACAATTTTTAGTTATGGAATCTGCAGATGATAGAACAAGGTTAAGCACTGCAGCTACAACTCCATGTGAAGTTGATAATGCGGCCAAAGGATTAGGCAGCAGATCAGGCGGATTAGGCTTGTCTGATCAGTTGAATGAGTTGAGGACAGATCCAATTACCGCTCCAGGAGAAGCTAATATTTCTACTGTAAGAGAAAGATTAAGTAACTCTCAGGTATCTGATTGTAATGAAGCCTTTGAATTGGGTGCAAATGCAACCCGTGCCGAGGATTTTGCCGCCTGGGCGGCCACAGATGCTGCGCAGAATGTGCAGCCTACTGATAGACTAGAAGGATCACATTCTCAACCAGCAGATGATGCAAACGATTCAGCAACACAATCTCCGCCTATGCAGATGATGGAGCGGCCAGGCGACCCTGCCTCCTCACCGTATAGGATTCCGGATTATGTGTTTGCTAGGAACAAATCAACAGCCCCATTGGAATGGAGCACTGAATCCAATGAGTCCTTGTTCAGCATTCAGATGGGAAATACGAGTTTTACCAGAGACCAGTTTAACTGGTTGTGTAAATCTGGTGAATTGGGTTTACCTGGTGAGGTAAATTACTTGCCTGGTGGTCCATGCAACATTGACTTCACAAGCAACCAGCCTCCGGCTAAGCAAACTGCACAATCAGCGGAGAATGCTTCCAATAAGTTAAGCACGGTGGTGGAGGAGCCGAGTCTGATGAGGGTAACTGAAGAGAAAGCTGCGGAAACCATGAGAGAAGTTCTAAGGGAAAATGCAGTGAATCATGAGAAAGAGAAGTCAACCACCGCCCGTGAGGGCGGCAAGTATCACTCGGCTCGCCTCTCTCATGCTTCGGATGGAAGTACAAGATCTTTTGCATTCCCAATATTGTTAGGGGACATAAATGTTTCGCTACGGGGAGAAGGAACGAAACACAAGCACCAATTGGGGTCAACGAGAACGTCGCAGCGAGAATCGCAGCCGCAAACACCAAAAGAAACACCGAACGCGTCGTCTCCGGCCTCAAAACCAACCCCAATTGTACCCAAGTGCGGCTGGGGGCTGTCTTGCTTCTCTTGTTGCCCATCATGCTGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

490

Amino Acids

53.25

Weight (kDa)

5.02

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	195
Acc16I	TGCGCA	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	195
AccBSI	CCGCTC	2 cut(s)	521, 763
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	1379
AccIII	TCCGGA	1 cut(s)	799
AclWI	GGATC	3 cut(s)	228, 503, 700
AcoI	YGGCCR	3 cut(s)	441, 645, 764
AcuI	CTGAAG	1 cut(s)	1119
AfaI	GTAC	6 cut(s)	129, 174, 263, 1234, 1413, 1465
AfiI	CCNNNNNNNGG	3 cut(s)	625, 1012, 1421
AflIII	ACRYGT	1 cut(s)	1377
AgsI	TTSAA	2 cut(s)	493, 599
AjnI	CCWGG	5 cut(s)	523, 638, 766, 949, 970
AleI	CACNNNNGTG	1 cut(s)	1067
AluBI	AGCT	7 cut(s)	77, 92, 101, 298, 413, 533, 1109
AluI	AGCT	7 cut(s)	77, 92, 101, 298, 413, 533, 1109
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	2 cut(s)	900, 1389
AlwI	GGATC	3 cut(s)	228, 503, 700
AlwNI	CAGNNNCTG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	5 cut(s)	49, 441, 645, 764, 1389
ApeKI	GCWGC	7 cut(s)	410, 456, 656, 670, 1109, 1336, 1348
ArsI	GACNNNNNNTTYG	2 cut(s)	1367, 1399
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	3 cut(s)	777, 947, 965
AvaII	GGWCC	1 cut(s)	977
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	7 cut(s)	422, 468, 643, 682, 1096, 1348, 1360
BccI	CCATC	6 cut(s)	47, 323, 751, 877, 1220, 1462
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	5 cut(s)	525, 640, 768, 951, 972
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	900, 1389
BfaI	CTAG	2 cut(s)	686, 816
BfmI	CTRYAG	2 cut(s)	381, 408
BfuAI	ACCTGC	1 cut(s)	195
BglI	GCCNNNNNGGC	2 cut(s)	641, 644
BglII	AGATCT	1 cut(s)	1238
BlpI	GCTNAGC	1 cut(s)	1017
Bme1390I	CCNGG	5 cut(s)	525, 640, 768, 951, 972
Bme18I	GGWCC	1 cut(s)	977
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	2 cut(s)	227, 1077
BmrFI	CCNGG	5 cut(s)	525, 640, 768, 951, 972
BmsI	GCATC	3 cut(s)	200, 643, 706
BpmI	CTGGAG	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	1017
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	4 cut(s)	52, 229, 624, 639
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	4 cut(s)	724, 754, 764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 1012, 1421
Bse1I	ACTGG	3 cut(s)	162, 910, 923
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	5 cut(s)	525, 640, 768, 951, 972
BseDI	CCNNGG	4 cut(s)	52, 229, 624, 639
BseGI	GGATG	2 cut(s)	215, 1231
BseLI	CCNNNNNNNGG	3 cut(s)	625, 1012, 1421
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	3 cut(s)	162, 910, 923
BseRI	GAGGAG	2 cut(s)	772, 1088
BseXI	GCAGC	7 cut(s)	422, 468, 643, 682, 1096, 1348, 1360
BseYI	CCCAGC	1 cut(s)	1425
BsgI	GTGCAG	2 cut(s)	689, 1011
Bsh1236I	CGCG	1 cut(s)	1379
BshFI	GGCC	5 cut(s)	51, 443, 647, 766, 1391
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	4 cut(s)	344, 800, 1013, 1388
BslFI	GGGAC	1 cut(s)	1280
BslI	CCNNNNNNNGG	3 cut(s)	625, 1012, 1421
BsmAI	GTCTC	2 cut(s)	900, 1389
BsmBI	CGTCTC	1 cut(s)	1389
BsmFI	GGGAC	1 cut(s)	1280
BsmI	GAATGC	3 cut(s)	876, 1048, 1247
BsnI	GGCC	5 cut(s)	51, 443, 647, 766, 1391
Bso31I	GGTCTC	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp13I	TCCGGA	1 cut(s)	799
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspANI	GGCC	5 cut(s)	51, 443, 647, 766, 1391
BspCNI	CTCAG	1 cut(s)	583
BspEI	TCCGGA	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	1379
BspHI	TCATGA	1 cut(s)	1153
BspLI	GGNNCC	2 cut(s)	227, 1077
BspMAI	CTGCAG	2 cut(s)	385, 412
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	228, 503, 700
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	900
BsrBI	CCGCTC	2 cut(s)	521, 763
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	162, 910, 923
BssECI	CCNNGG	4 cut(s)	52, 229, 624, 639
BssMI	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	5 cut(s)	525, 640, 768, 951, 972
Bst4CI	ACNGT	6 cut(s)	19, 72, 132, 547, 789, 1066
Bst6I	CTCTTC	2 cut(s)	108, 1095
BstAPI	GCANNNNNTGC	3 cut(s)	620, 667, 716
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	99, 1207
BstDEI	CTNAG	4 cut(s)	570, 1017, 1133, 1467
BstF5I	GGATG	2 cut(s)	215, 1231
BstFNI	CGCG	1 cut(s)	1379
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	6 cut(s)	223, 464, 487, 511, 695, 1241
BstMAI	GTCTC	2 cut(s)	900, 1389
BstMBI	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
BstNI	CCWGG	5 cut(s)	525, 640, 768, 951, 972
BstSCI	CCNGG	5 cut(s)	523, 638, 766, 949, 970
BstSFI	CTRYAG	2 cut(s)	381, 408
BstUI	CGCG	1 cut(s)	1379
BstV1I	GCAGC	7 cut(s)	422, 468, 643, 682, 1096, 1348, 1360
BstX2I	RGATCY	2 cut(s)	508, 1238
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	2 cut(s)	508, 1238
BsuRI	GGCC	5 cut(s)	51, 443, 647, 766, 1391
BtsCI	GGATG	2 cut(s)	215, 1231
BtsI	GCAGTG	2 cut(s)	405, 1152
BtsIMutI	CAGTG	3 cut(s)	405, 849, 1152
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	99, 1207
CaiI	CAGNNNCTG	1 cut(s)	656
CciI	TCATGA	1 cut(s)	1153
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	977
CseI	GACGC	1 cut(s)	1368
CsiI	ACCWGGT	1 cut(s)	949
Csp6I	GTAC	6 cut(s)	128, 173, 262, 1233, 1412, 1464
CviAII	CATG	6 cut(s)	423, 981, 1120, 1154, 1217, 1458
CviQI	GTAC	6 cut(s)	128, 173, 262, 1233, 1412, 1464
DdeI	CTNAG	4 cut(s)	570, 1017, 1133, 1467
DpnI	GATC	6 cut(s)	222, 463, 486, 510, 694, 1240
DpnII	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
EaeI	YGGCCR	3 cut(s)	441, 645, 764
Eam1104I	CTCTTC	2 cut(s)	108, 1095
EarI	CTCTTC	2 cut(s)	108, 1095
EciI	GGCGGA	2 cut(s)	483, 732
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	900
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	1 cut(s)	1119
EcoRII	CCWGG	5 cut(s)	523, 638, 766, 949, 970
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	1389
FaeI	CATG	6 cut(s)	426, 984, 1123, 1157, 1220, 1461
FaqI	GGGAC	1 cut(s)	1280
FatI	CATG	6 cut(s)	422, 980, 1119, 1153, 1216, 1457
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	2 cut(s)	222, 1238
FspBI	CTAG	2 cut(s)	686, 816
FspI	TGCGCA	1 cut(s)	660
GlaI	GCGC	1 cut(s)	660
GsaI	CCCAGC	1 cut(s)	1429
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	5 cut(s)	51, 443, 647, 766, 1391
HapII	CCGG	4 cut(s)	344, 800, 1013, 1388
HgaI	GACGC	1 cut(s)	1368
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	6 cut(s)	426, 984, 1123, 1157, 1220, 1461
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	2 cut(s)	1170, 1323
HindII	GTYRAC	2 cut(s)	1170, 1323
HindIII	AAGCTT	1 cut(s)	90
HpaII	CCGG	4 cut(s)	344, 800, 1013, 1388
HphI	GGTGA	3 cut(s)	777, 947, 965
Hpy166II	GTNNAC	4 cut(s)	250, 947, 1170, 1323
Hpy188III	TCNNGA	2 cut(s)	800, 1154
Hpy8I	GTNNAC	4 cut(s)	250, 947, 1170, 1323
Hpy99I	CGWCG	2 cut(s)	1336, 1384
HpyAV	CCTTC	3 cut(s)	196, 683, 1286
HpyCH4III	ACNGT	6 cut(s)	19, 72, 132, 547, 789, 1066
HpyCH4IV	ACGT	2 cut(s)	246, 1331
HpyF3I	CTNAG	4 cut(s)	570, 1017, 1133, 1467
HpySE526I	ACGT	2 cut(s)	246, 1331
Hsp92II	CATG	6 cut(s)	426, 984, 1123, 1157, 1220, 1461
HspAI	GCGC	1 cut(s)	659
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	5 cut(s)	225, 526, 760, 846, 1075
Lsp1109I	GCAGC	7 cut(s)	422, 468, 643, 682, 1096, 1348, 1360
LweI	GCATC	3 cut(s)	200, 643, 706
MabI	ACCWGGT	1 cut(s)	949
MaeI	CTAG	2 cut(s)	686, 816
MaeII	ACGT	2 cut(s)	246, 1331
MaeIII	GTNAC	3 cut(s)	58, 563, 1093
MalI	GATC	6 cut(s)	222, 463, 486, 510, 694, 1240
MbiI	CCGCTC	2 cut(s)	521, 763
MboI	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
MboII	GAAGA	3 cut(s)	95, 271, 1112
MfeI	CAATTG	2 cut(s)	1313, 1407
MflI	RGATCY	2 cut(s)	508, 1238
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	8 cut(s)	176, 362, 513, 599, 938, 961, 1313, 1407
MluI	ACGCGT	1 cut(s)	1377
MlyI	GAGTC	2 cut(s)	872, 1090
MmeI	TCCRAC	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	4 cut(s)	401, 560, 915, 1058
MslI	CAYNNNNRTG	3 cut(s)	841, 881, 1067
MspA1I	CMGCKG	2 cut(s)	298, 1037
MspI	CCGG	4 cut(s)	344, 800, 1013, 1388
MspR9I	CCNGG	5 cut(s)	525, 640, 768, 951, 972
MunI	CAATTG	2 cut(s)	1313, 1407
Mva1269I	GAATGC	3 cut(s)	876, 1048, 1247
MvaI	CCWGG	5 cut(s)	525, 640, 768, 951, 972
MvnI	CGCG	1 cut(s)	1379
NdeII	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
NlaIII	CATG	6 cut(s)	426, 984, 1123, 1157, 1220, 1461
NlaIV	GGNNCC	2 cut(s)	227, 1077
NmeAIII	GCCGAG	4 cut(s)	102, 649, 1104, 1181
NsbI	TGCGCA	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	1067
PagI	TCATGA	1 cut(s)	1153
PaqCI	CACCTGC	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	3 cut(s)	876, 1048, 1247
PfeI	GAWTC	8 cut(s)	302, 323, 377, 725, 796, 854, 1150, 1343
PfoI	TCCNGGA	1 cut(s)	523
PleI	GAGTC	2 cut(s)	871, 1089
PpsI	GAGTC	2 cut(s)	871, 1089
Psp6I	CCWGG	5 cut(s)	523, 638, 766, 949, 970
PspFI	CCCAGC	1 cut(s)	1425
PspGI	CCWGG	5 cut(s)	523, 638, 766, 949, 970
PspN4I	GGNNCC	2 cut(s)	227, 1077
PspPI	GGNCC	1 cut(s)	977
PstI	CTGCAG	2 cut(s)	385, 412
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	2 cut(s)	508, 1238
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	6 cut(s)	129, 174, 263, 1234, 1413, 1465
RsaNI	GTAC	6 cut(s)	128, 173, 262, 1233, 1412, 1464
RseI	CAYNNNNRTG	3 cut(s)	841, 881, 1067
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	401, 560, 915, 1058
Sau3AI	GATC	6 cut(s)	220, 461, 484, 508, 692, 1238
Sau96I	GGNCC	1 cut(s)	977
SchI	GAGTC	2 cut(s)	872, 1090
ScrFI	CCNGG	5 cut(s)	525, 640, 768, 951, 972
SduI	GDGCHC	1 cut(s)	851
SexAI	ACCWGGT	1 cut(s)	949
SfaNI	GCATC	3 cut(s)	200, 643, 706
SfcI	CTRYAG	2 cut(s)	381, 408
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	3 cut(s)	841, 881, 1067
Sse9I	AATT	8 cut(s)	176, 362, 513, 599, 938, 961, 1313, 1407
SspI	AATATT	2 cut(s)	538, 1257
SspMI	CTAG	2 cut(s)	686, 816
StyD4I	CCNGG	5 cut(s)	523, 638, 766, 949, 970
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	6 cut(s)	19, 72, 132, 547, 789, 1066
TaiI	ACGT	2 cut(s)	249, 1334
TaqI	TCGA	2 cut(s)	282, 316
TasI	AATT	8 cut(s)	176, 362, 513, 599, 938, 961, 1313, 1407
TatI	WGTACW	3 cut(s)	172, 1232, 1463
TauI	GCSGC	7 cut(s)	443, 638, 647, 766, 1191, 1354, 1425
TfiI	GAWTC	8 cut(s)	302, 323, 377, 725, 796, 854, 1150, 1343
Tru1I	TTAA	4 cut(s)	401, 560, 915, 1058
Tru9I	TTAA	4 cut(s)	401, 560, 915, 1058
TscAI	CASTG	3 cut(s)	412, 856, 1152
TseI	GCWGC	7 cut(s)	410, 456, 656, 670, 1109, 1336, 1348
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	3 cut(s)	412, 856, 1152
VpaK11BI	GGWCC	1 cut(s)	977
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	2 cut(s)	686, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.