Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000111.1

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

46624 .. 48053

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000111.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggaatctgcgaatgagaaaataacgtcaagcccatcttcctccccattaccatcatcttcagaccatttgcaagcagcccctgaaagcaaaggcatagggaattcggacccgagattagatcagacagttacaggtgctggtgagattgcatctgcaggcgaaggcttaagccccaagacccctgcaagtacttctggccctctggaagttgatgtgggcaatgttgtagctacttcggaaaatggtcttgcaacgactccgtcccctgctggctctcttctaagtacaagctacatcgatgaggattttcaaggcggctcgacacttaagactgagcagcttaatggtgagttgagccagggcaatgattcagcaacacaatcgcctcctaagcaggtgatggagcggcctagtgagccgagtactccgtacaggatcccggattatgtctttgcgaggaaaccatccacagccccgatggaatggagtgctgcttccaatgaatccctattcagcattcagatgggtaacatgagtttcaccagagaacagtttgcctttttaggtaaatctggtgagttgggtttatctggagaacagaacatgttgtccggtccatatatagacttctcgagtaaccagcctccggataagcaagttgaattttcccaaaacggcggcaatttggatgagggcccaaatccgagagtaactgaagcaaaagccgtagagactatgagagaggttataagggaaattgccgaaaatgacaacaaagcaagtccatcatcttcggcggataatcacagcaaaggaagcccgtcgcccagcgtccgaaatcctatagtcagcccatccctcactgaacacaagtttcataacatatctagcctttctcatgcttctgatggaagtactaaatcatttgcatttccagtattgtcaggcgaggagagaagtggttcactgagggtagatggagtagggaagcaaaagcaacattcaccacgaagaggctcacggccacaaacacctaaagaaagcaggaagccgattgctgcatctcagagcccgaaatcagccctgaccccgattaagcacaaatggctaccttgctcttgttgcccattttgtaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

40.2

Weight (kDa)

5.5

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	4 cut(s)	318, 409, 681, 800
AclWI	GGATC	2 cut(s)	433, 446
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	2 cut(s)	103, 665
AcuI	CTGAAG	2 cut(s)	45, 738
AfaI	GTAC	5 cut(s)	193, 289, 427, 434, 919
AfiI	CCNNNNNNNGG	2 cut(s)	649, 1016
AflII	CTTAAG	2 cut(s)	169, 329
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	314, 665
AjnI	CCWGG	1 cut(s)	360
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	3 cut(s)	233, 294, 343
AluI	AGCT	3 cut(s)	233, 294, 343
Alw26I	GTCTC	1 cut(s)	728
AlwI	GGATC	2 cut(s)	433, 446
AlwNI	CAGNNNCTG	2 cut(s)	83, 140
Ama87I	CYCGRG	2 cut(s)	112, 634
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	4 cut(s)	199, 410, 697, 1025
ApaI	GGGCCC	1 cut(s)	701
ApeKI	GCWGC	4 cut(s)	77, 340, 494, 1061
ApoI	RAATTY	2 cut(s)	103, 665
Asp700I	GAANNNNTTC	1 cut(s)	964
AspS9I	GGNCC	5 cut(s)	109, 200, 617, 697, 698
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	6 cut(s)	155, 362, 412, 535, 590, 999
AvaI	CYCGRG	2 cut(s)	112, 634
AvaII	GGWCC	2 cut(s)	109, 617
BaeGI	GKGCMC	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	701, 1076
BbvI	GCAGC	4 cut(s)	89, 352, 481, 1048
BceAI	ACGGC	3 cut(s)	694, 713, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	2 cut(s)	414, 891
BfmI	CTRYAG	2 cut(s)	156, 846
BfrI	CTTAAG	2 cut(s)	169, 329
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	7 cut(s)	78, 319, 341, 410, 495, 682, 1062
BlsI	GCNGC	7 cut(s)	79, 320, 342, 411, 496, 683, 1063
BmcAI	AGTACT	3 cut(s)	193, 427, 919
Bme1390I	CCNGG	2 cut(s)	362, 443
Bme18I	GGWCC	2 cut(s)	109, 617
BmeT110I	CYCGRG	2 cut(s)	112, 634
BmgT120I	GGNCC	5 cut(s)	109, 200, 617, 697, 698
BmiI	GGNNCC	3 cut(s)	111, 440, 699
BmrFI	CCNGG	2 cut(s)	362, 443
BmsI	GCATC	2 cut(s)	161, 1073
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	2 cut(s)	614, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 1016
Bse1I	ACTGG	1 cut(s)	938
Bse3DI	GCAATG	2 cut(s)	229, 373
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	467, 697, 857
BseLI	CCNNNNNNNGG	2 cut(s)	649, 1016
BseMI	GCAATG	2 cut(s)	229, 373
BseMII	CTCAG	3 cut(s)	327, 962, 1082
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	1 cut(s)	968
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	4 cut(s)	89, 352, 481, 1048
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	4 cut(s)	201, 412, 699, 1027
BshVI	ATCGAT	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	112, 634
BsiSI	CCGG	3 cut(s)	443, 615, 650
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	649, 1016
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	201, 412, 699, 1027
BsoBI	CYCGRG	2 cut(s)	112, 634
Bsp120I	GGGCCC	1 cut(s)	697
Bsp1286I	GDGCHC	2 cut(s)	701, 1076
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	121, 438
BspACI	CCGC	4 cut(s)	318, 409, 681, 800
BspANI	GGCC	4 cut(s)	201, 412, 699, 1027
BspCNI	CTCAG	3 cut(s)	328, 963, 1081
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	111, 440, 699
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	433, 446
BspTI	CTTAAG	2 cut(s)	169, 329
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	229, 373
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	121, 438
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	130, 555
Bst6I	CTCTTC	2 cut(s)	285, 1009
BstAFI	CTTAAG	2 cut(s)	169, 329
BstC8I	GCNNGC	3 cut(s)	75, 160, 274
BstDEI	CTNAG	5 cut(s)	284, 336, 393, 971, 1068
BstF5I	GGATG	3 cut(s)	467, 697, 857
BstKTI	GATC	2 cut(s)	124, 441
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	2 cut(s)	121, 438
BstMWI	GCNNNNNNNGC	5 cut(s)	394, 418, 819, 1108, 1125
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	360, 441
BstSFI	CTRYAG	2 cut(s)	156, 846
BstSLI	GKGCMC	1 cut(s)	701
BstV1I	GCAGC	4 cut(s)	89, 352, 481, 1048
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	4 cut(s)	201, 412, 699, 1027
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	467, 697, 857
BtsIMutI	CAGTG	2 cut(s)	864, 968
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	75, 160, 274
CaiI	CAGNNNCTG	2 cut(s)	83, 140
Cfr13I	GGNCC	5 cut(s)	109, 200, 617, 697, 698
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	1 cut(s)	823
Csp6I	GTAC	5 cut(s)	192, 288, 426, 433, 918
CviAII	CATG	3 cut(s)	535, 607, 902
CviQI	GTAC	5 cut(s)	192, 288, 426, 433, 918
DdeI	CTNAG	5 cut(s)	284, 336, 393, 971, 1068
DpnI	GATC	2 cut(s)	123, 440
DpnII	GATC	2 cut(s)	121, 438
EaeI	YGGCCR	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	285, 1009
EarI	CTCTTC	2 cut(s)	285, 1009
EciI	GGCGGA	1 cut(s)	815
Eco24I	GRGCYC	2 cut(s)	701, 1076
Eco47I	GGWCC	2 cut(s)	109, 617
Eco57I	CTGAAG	2 cut(s)	45, 738
Eco88I	CYCGRG	2 cut(s)	112, 634
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	701, 1076
FaeI	CATG	3 cut(s)	538, 610, 905
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	534, 606, 901
Fnu4HI	GCNGC	7 cut(s)	78, 319, 341, 410, 495, 682, 1062
FokI	GGATG	3 cut(s)	454, 704, 844
FriOI	GRGCYC	2 cut(s)	701, 1076
Fsp4HI	GCNGC	7 cut(s)	78, 319, 341, 410, 495, 682, 1062
FspBI	CTAG	2 cut(s)	414, 891
GluI	GCNGC	7 cut(s)	78, 319, 341, 410, 495, 682, 1062
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	201, 412, 699, 1027
HapII	CCGG	3 cut(s)	443, 615, 650
HgaI	GACGC	1 cut(s)	823
Hin1II	CATG	3 cut(s)	538, 610, 905
HinfI	GANTC	4 cut(s)	5, 259, 371, 506
HpaII	CCGG	3 cut(s)	443, 615, 650
HphI	GGTGA	6 cut(s)	155, 362, 412, 535, 590, 999
Hpy166II	GTNNAC	1 cut(s)	968
Hpy188I	TCNGA	9 cut(s)	64, 109, 126, 241, 525, 708, 839, 910, 1071
Hpy188III	TCNNGA	4 cut(s)	206, 594, 634, 650
Hpy8I	GTNNAC	1 cut(s)	968
Hpy99I	CGWCG	1 cut(s)	829
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	130, 555
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	7 cut(s)	73, 152, 158, 188, 254, 932, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	394, 418, 819, 1108, 1125
HpyF3I	CTNAG	5 cut(s)	284, 336, 393, 971, 1068
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	538, 610, 905
Kpn2I	TCCGGA	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	121, 438
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	4 cut(s)	89, 352, 481, 1048
LweI	GCATC	2 cut(s)	161, 1073
MaeI	CTAG	2 cut(s)	414, 891
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	5 cut(s)	130, 530, 638, 712, 1136
MalI	GATC	2 cut(s)	123, 440
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	2 cut(s)	121, 438
MboII	GAAGA	5 cut(s)	30, 51, 272, 786, 1026
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	701, 1076
MluCI	AATT	4 cut(s)	103, 665, 685, 759
MlyI	GAGTC	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	964
MseI	TTAA	4 cut(s)	170, 330, 345, 1098
MslI	CAYNNNNRTG	1 cut(s)	524
MspCI	CTTAAG	2 cut(s)	169, 329
MspI	CCGG	3 cut(s)	443, 615, 650
MspR9I	CCNGG	2 cut(s)	362, 443
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	5 cut(s)	394, 418, 819, 1108, 1125
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	121, 438
NlaIII	CATG	3 cut(s)	538, 610, 905
NlaIV	GGNNCC	3 cut(s)	111, 440, 699
NmeAIII	GCCGAG	1 cut(s)	447
NspI	RCATGY	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	3 cut(s)	5, 371, 506
PflFI	GACNNNGTC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	7 cut(s)	79, 320, 342, 411, 496, 683, 1063
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	111, 440, 699
PspOMI	GGGCCC	1 cut(s)	697
PspPI	GGNCC	5 cut(s)	109, 200, 617, 697, 698
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	2 cut(s)	83, 140
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	5 cut(s)	193, 289, 427, 434, 919
RsaNI	GTAC	5 cut(s)	192, 288, 426, 433, 918
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	170, 330, 345, 1098
SatI	GCNGC	7 cut(s)	78, 319, 341, 410, 495, 682, 1062
Sau3AI	GATC	2 cut(s)	121, 438
Sau96I	GGNCC	5 cut(s)	109, 200, 617, 697, 698
ScaI	AGTACT	3 cut(s)	193, 427, 919
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	362, 443
SduI	GDGCHC	2 cut(s)	701, 1076
SfaNI	GCATC	2 cut(s)	161, 1073
SfcI	CTRYAG	2 cut(s)	156, 846
Sfr274I	CTCGAG	1 cut(s)	634
SinI	GGWCC	2 cut(s)	109, 617
SlaI	CTCGAG	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	169, 329, 634
SmoI	CTYRAG	3 cut(s)	169, 329, 634
Sse9I	AATT	4 cut(s)	103, 665, 685, 759
SsiI	CCGC	4 cut(s)	318, 409, 681, 800
SspMI	CTAG	2 cut(s)	414, 891
StyD4I	CCNGG	2 cut(s)	360, 441
TaaI	ACNGT	2 cut(s)	130, 555
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	300, 323, 635
TasI	AATT	4 cut(s)	103, 665, 685, 759
TatI	WGTACW	4 cut(s)	191, 287, 425, 917
TauI	GCSGC	3 cut(s)	321, 412, 684
TfiI	GAWTC	3 cut(s)	5, 371, 506
Tru1I	TTAA	4 cut(s)	170, 330, 345, 1098
Tru9I	TTAA	4 cut(s)	170, 330, 345, 1098
TscAI	CASTG	2 cut(s)	871, 975
TseI	GCWGC	4 cut(s)	77, 340, 494, 1061
TspDTI	ATGAA	2 cut(s)	519, 869
TspGWI	ACGGA	2 cut(s)	252, 420
TspRI	CASTG	2 cut(s)	871, 975
Tth111I	GACNNNGTC	1 cut(s)	262
Vha464I	CTTAAG	2 cut(s)	169, 329
VpaK11BI	GGWCC	2 cut(s)	109, 617
XapI	RAATTY	2 cut(s)	103, 665
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	2 cut(s)	414, 891
ZrmI	AGTACT	3 cut(s)	193, 427, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.