Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

16439901 .. 16442427

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G205600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCATCTGCAGATGAGGGAAAAAGGTTAAGCCCCCCCTCCTCCTCCCCACTATCAACATCTTCAGACTTTGTCCATGCAGCAGCCACAGAATCCCCTGCTGAAAGCACAACCGGCCAGAGAAAACAGGACGAGGAGGACAATGTCATAGGAATTTTGGAGCTGGGCGGAATCAGTAGCAACAATGTTATGAGGACAAGCTCTGCTACAACTCTTGGTGAAGTTGATCGATTGAATGATTTGAGGACAGATTCTGCTACCACTCTAGGTGAAGCTAATGCTTCTAGCTCCAGAGGAGAAAATTTTAGTCACTCTCTATCTGATTGTTCTGAAACCACCGACTTTGGATTGGGCACAAATGCAACCAGTATGTCCCAAGAAGGTTCCACTGGCCATACAAAACTTGTGGACTCTCAGGAAGGTTCAGATTATGCTGATGAGGATTTTCTAGGCGCCTCAATGCCGAAGAACGAGCAACCTGGTGATGGATTAGAAGCACCACCTTCTCAGCCAGCGGTTGATGATCTATCATCAGCAACAACAGAATCTCCTCCTACGCAGGTGATGGAGCGACCCGGTGACCCTTCTTCATATAGGATCCCTGACTATGTGTTTGCTAGGAACAAATCCACAGCCCCATTGGAGTGGAGCACTGCATCCAATGAATCCTTGTTCAGCATTCAGATGGGGAATATGAGTTTCACCAAAGACCAGTTTCCTTGGTTGGGCAAATCTGGTGAGCTGGGTTTGCCTGGTGAAGTGAGCATGCCTATGCCTAGTGGTAGCAACCTCAGCAATATTGATTTCTCAAGCAACCAGCCTCCATCTAAGCAGTCTGCTGCTGAGAATTCCCAGGAAAGTGGCAATTTGGAGGAGGAAGTTGAACCAAGCCCAAGAGTAACTGAAGCAAAATCTGCAGCAACCATGAGAGAGGTTATAAGGGAAAATGCAGAAAATCATGAGAAAGCAAATGACTCTGTTGCTGAGGGAAAGTATCATTCAGCTTGCCTCTCTCATGCTTCAGATGGAAGCACAAGATCTTTTGCATTTCCAATATTGGCAGGGGAGGGAGACGTAAGCTGTTCACTGAGGGGAGATGCAATGAAACAAAGGCAACATTCGCCGTCAAAGCCAAAGTCGAAAAGAGAATCGCGGCCACAAACACCTAAAGAAAGTCCAAATGGATCATCACCTCAGACCCCAAAACCAACCCCAAATGGAGGAAAGTGCAGATGGGGGCTGTCCTGCTTCTCTTGTTGCCCATCATGCTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

44.98

Weight (kDa)

4.7

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
AarI	CACCTGC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	1153
AciI	CCGC	3 cut(s)	168, 515, 1153
AclWI	GGATC	3 cut(s)	592, 605, 1192
AcoI	YGGCCR	3 cut(s)	115, 391, 1154
AcsI	RAATTY	3 cut(s)	153, 301, 847
AcuI	CTGAAG	3 cut(s)	48, 924, 1005
AcyI	GRCGYC	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	485, 725, 1220
AgsI	TTSAA	2 cut(s)	235, 884
AjnI	CCWGG	3 cut(s)	478, 751, 852
AluBI	AGCT	7 cut(s)	163, 201, 275, 288, 742, 1004, 1080
AluI	AGCT	7 cut(s)	163, 201, 275, 288, 742, 1004, 1080
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	1 cut(s)	1065
AlwI	GGATC	3 cut(s)	592, 605, 1192
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	115, 391, 1154
ApeKI	GCWGC	4 cut(s)	80, 83, 839, 917
ApoI	RAATTY	3 cut(s)	153, 301, 847
ArsI	GACNNNNNNTTYG	4 cut(s)	596, 628, 1121, 1153
AspLEI	GCGC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	9 cut(s)	230, 281, 494, 574, 590, 694, 749, 767, 1182
BaeGI	GKGCMC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	653
BbvCI	CCTCAGC	2 cut(s)	791, 984
BbvI	GCAGC	4 cut(s)	92, 95, 826, 929
BccI	CCATC	7 cut(s)	479, 559, 679, 832, 1019, 1227, 1270
BceAI	ACGGC	1 cut(s)	1108
BciT130I	CCWGG	3 cut(s)	480, 753, 854
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	1065
BfaI	CTAG	5 cut(s)	266, 285, 449, 618, 777
BfmI	CTRYAG	2 cut(s)	9, 915
BfoI	RGCGCY	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	1037
BisI	GCNGC	5 cut(s)	81, 84, 840, 918, 1154
BlsI	GCNGC	5 cut(s)	82, 85, 841, 919, 1155
Bme1390I	CCNGG	4 cut(s)	480, 576, 753, 854
BmiI	GGNNCC	3 cut(s)	385, 454, 599
BmrFI	CCNGG	4 cut(s)	480, 576, 753, 854
BmsI	GCATC	3 cut(s)	14, 665, 1087
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	2 cut(s)	791, 984
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	719, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 725, 1220
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	3 cut(s)	366, 394, 712
Bse3DI	GCAATG	1 cut(s)	1107
BseBI	CCWGG	3 cut(s)	480, 753, 854
BseCI	ATCGAT	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	719, 852
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	3 cut(s)	485, 725, 1220
BseMI	GCAATG	1 cut(s)	1107
BseMII	CTCAG	7 cut(s)	428, 521, 805, 834, 975, 1079, 1208
BseNI	ACTGG	3 cut(s)	366, 394, 712
BseRI	GAGGAG	6 cut(s)	31, 34, 149, 309, 540, 887
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	4 cut(s)	92, 95, 826, 929
BseYI	CCCAGC	2 cut(s)	163, 742
BsgI	GTGCAG	1 cut(s)	1249
Bsh1236I	CGCG	1 cut(s)	1153
BshFI	GGCC	3 cut(s)	117, 393, 1156
BshNI	GGYRCC	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	114, 576
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	485, 725, 1220
BsmAI	GTCTC	1 cut(s)	1065
BsmBI	CGTCTC	1 cut(s)	1065
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	3 cut(s)	117, 393, 1156
Bsp1286I	GDGCHC	2 cut(s)	356, 653
Bsp143I	GATC	5 cut(s)	226, 523, 597, 1037, 1184
BspACI	CCGC	3 cut(s)	168, 515, 1153
BspANI	GGCC	3 cut(s)	117, 393, 1156
BspCNI	CTCAG	7 cut(s)	427, 520, 804, 835, 976, 1080, 1207
BspDI	ATCGAT	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	385, 454, 599
BspMAI	CTGCAG	2 cut(s)	13, 919
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	3 cut(s)	592, 605, 1192
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	1107
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	366, 394, 712
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	719, 852
BssMI	GATC	5 cut(s)	226, 523, 597, 1037, 1184
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	3 cut(s)	480, 753, 854
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	513, 767, 1006
BstDEI	CTNAG	8 cut(s)	414, 507, 791, 828, 843, 984, 1088, 1194
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	1153
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	229, 526, 600, 1040, 1187
BstMAI	GTCTC	1 cut(s)	1065
BstMBI	GATC	5 cut(s)	226, 523, 597, 1037, 1184
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 748, 792, 914, 1120, 1129, 1266
BstNI	CCWGG	3 cut(s)	480, 753, 854
BstNSI	RCATGY	1 cut(s)	769
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	478, 574, 751, 852
BstSFI	CTRYAG	2 cut(s)	9, 915
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	1 cut(s)	1153
BstV1I	GCAGC	4 cut(s)	92, 95, 826, 929
BstX2I	RGATCY	2 cut(s)	597, 1037
BstXI	CCANNNNNNTGG	2 cut(s)	645, 860
BstYI	RGATCY	2 cut(s)	597, 1037
Bsu15I	ATCGAT	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	117, 393, 1156
BsuTUI	ATCGAT	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	656
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	387, 651, 1085
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	513, 767, 1006
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	478
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 387, 422
CviAII	CATG	6 cut(s)	77, 766, 925, 959, 1016, 1266
DdeI	CTNAG	8 cut(s)	414, 507, 791, 828, 843, 984, 1088, 1194
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	5 cut(s)	228, 525, 599, 1039, 1186
DpnII	GATC	5 cut(s)	226, 523, 597, 1037, 1184
EaeI	YGGCCR	3 cut(s)	115, 391, 1154
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	719
Eco57I	CTGAAG	3 cut(s)	48, 924, 1005
Eco91I	GGTNACC	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	3 cut(s)	478, 751, 852
EcoT14I	CCWWGG	1 cut(s)	719
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	1 cut(s)	1065
FaeI	CATG	6 cut(s)	80, 769, 928, 962, 1019, 1269
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	6 cut(s)	76, 765, 924, 958, 1015, 1265
Fnu4HI	GCNGC	5 cut(s)	81, 84, 840, 918, 1154
FokI	GGATG	1 cut(s)	643
Fsp4HI	GCNGC	5 cut(s)	81, 84, 840, 918, 1154
FspBI	CTAG	5 cut(s)	266, 285, 449, 618, 777
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	5 cut(s)	81, 84, 840, 918, 1154
GsaI	CCCAGC	2 cut(s)	167, 746
GsuI	CTGGAG	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	117, 393, 1156
HapII	CCGG	2 cut(s)	114, 576
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	6 cut(s)	80, 769, 928, 962, 1019, 1269
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	8 cut(s)	92, 171, 251, 410, 545, 665, 974, 1148
HpaII	CCGG	2 cut(s)	114, 576
HphI	GGTGA	9 cut(s)	230, 281, 494, 574, 590, 694, 749, 767, 1182
Hpy166II	GTNNAC	2 cut(s)	409, 1085
Hpy188I	TCNGA	7 cut(s)	67, 322, 331, 427, 684, 1024, 1197
Hpy188III	TCNNGA	4 cut(s)	291, 416, 959, 1275
Hpy8I	GTNNAC	2 cut(s)	409, 1085
HpyAV	CCTTC	4 cut(s)	374, 413, 513, 594
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	9 cut(s)	11, 80, 362, 656, 917, 950, 1046, 1100, 1230
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 748, 792, 914, 1120, 1129, 1266
HpyF3I	CTNAG	8 cut(s)	414, 507, 791, 828, 843, 984, 1088, 1194
HpySE526I	ACGT	1 cut(s)	1074
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	6 cut(s)	80, 769, 928, 962, 1019, 1269
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	5 cut(s)	226, 523, 597, 1037, 1184
LmnI	GCTCC	4 cut(s)	160, 293, 568, 648
Lsp1109I	GCAGC	4 cut(s)	92, 95, 826, 929
LweI	GCATC	3 cut(s)	14, 665, 1087
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	5 cut(s)	266, 285, 449, 618, 777
MaeII	ACGT	1 cut(s)	1074
MaeIII	GTNAC	3 cut(s)	308, 578, 898
MalI	GATC	5 cut(s)	228, 525, 599, 1039, 1186
MboI	GATC	5 cut(s)	226, 523, 597, 1037, 1184
MboII	GAAGA	3 cut(s)	54, 478, 579
MflI	RGATCY	2 cut(s)	597, 1037
MhlI	GDGCHC	2 cut(s)	356, 653
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	153, 301, 847, 865
MluNI	TGGCCA	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	404, 968
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	3 cut(s)	643, 683, 770
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	114, 576
MspR9I	CCNGG	4 cut(s)	480, 576, 753, 854
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	3 cut(s)	480, 753, 854
MvnI	CGCG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	7 cut(s)	114, 748, 792, 914, 1120, 1129, 1266
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	5 cut(s)	226, 523, 597, 1037, 1184
NlaIII	CATG	6 cut(s)	80, 769, 928, 962, 1019, 1269
NlaIV	GGNNCC	3 cut(s)	385, 454, 599
NmuCI	GTSAC	2 cut(s)	308, 578
NspI	RCATGY	1 cut(s)	769
PaeI	GCATGC	1 cut(s)	769
PagI	TCATGA	1 cut(s)	958
PaqCI	CACCTGC	1 cut(s)	550
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	6 cut(s)	92, 171, 251, 545, 665, 1148
PflFI	GACNNNGTC	2 cut(s)	71, 143
PkrI	GCNGC	5 cut(s)	82, 85, 841, 919, 1155
PleI	GAGTC	2 cut(s)	404, 968
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	2 cut(s)	404, 968
PsiI	TTATAA	1 cut(s)	938
Psp6I	CCWGG	3 cut(s)	478, 751, 852
PspEI	GGTNACC	1 cut(s)	578
PspFI	CCCAGC	2 cut(s)	163, 742
PspGI	CCWGG	3 cut(s)	478, 751, 852
PspN4I	GGNNCC	3 cut(s)	385, 454, 599
PstI	CTGCAG	2 cut(s)	13, 919
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	597, 1037
PsyI	GACNNNGTC	2 cut(s)	71, 143
RseI	CAYNNNNRTG	3 cut(s)	643, 683, 770
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	5 cut(s)	81, 84, 840, 918, 1154
Sau3AI	GATC	5 cut(s)	226, 523, 597, 1037, 1184
SchI	GAGTC	2 cut(s)	404, 968
ScrFI	CCNGG	4 cut(s)	480, 576, 753, 854
SduI	GDGCHC	2 cut(s)	356, 653
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	14, 665, 1087
SfcI	CTRYAG	2 cut(s)	9, 915
SfoI	GGCGCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	3 cut(s)	643, 683, 770
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
SphI	GCATGC	1 cut(s)	769
Sse9I	AATT	4 cut(s)	153, 301, 847, 865
SsiI	CCGC	3 cut(s)	168, 515, 1153
SspDI	GGCGCC	1 cut(s)	452
SspI	AATATT	2 cut(s)	799, 1056
SspMI	CTAG	5 cut(s)	266, 285, 449, 618, 777
StyD4I	CCNGG	4 cut(s)	478, 574, 751, 852
StyI	CCWWGG	1 cut(s)	719
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	2 cut(s)	229, 1139
TasI	AATT	4 cut(s)	153, 301, 847, 865
TauI	GCSGC	1 cut(s)	1156
TfiI	GAWTC	6 cut(s)	92, 171, 251, 545, 665, 1148
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	3 cut(s)	394, 658, 1092
TseFI	GTSAC	2 cut(s)	308, 578
TseI	GCWGC	4 cut(s)	80, 83, 839, 917
Tsp45I	GTSAC	2 cut(s)	308, 578
TspDTI	ATGAA	3 cut(s)	579, 678, 1118
TspRI	CASTG	3 cut(s)	394, 658, 1092
Tth111I	GACNNNGTC	2 cut(s)	71, 143
XapI	RAATTY	3 cut(s)	153, 301, 847
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	5 cut(s)	266, 285, 449, 618, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.