Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Reverse (-)

63252681 .. 63257949

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAATCTGCGAATGAGAAAATAACATCAAGCCCATCTTCCTCCCCATTACCATCATCTTCAGACCATGTGCAAGCAGCCCCTGAAAGCAAAGGCATAGGGAATTCGGACCCGAGATTAAATCAGGCAGTTACAGGTGCTGGTGAGATTGCATCTGCAGGCAAAGGCTTAAGCCCCAAGACCCCTGCAAGTACTTCTGGCCCTCTGGAAGTTGATGTTGGCAATGTTGTAGCAACTTCGGAAAATGGTCTTGCACCGACTCCGTCCCCTGTTGGCTCTCTTCTAAGTACAAGCTACACCGATGAGGATTTTCAAGGCGGCTCGACACCTAAGACTGAGCAGCTTAATGGTGAGTTGAGCCAGGGCAATGATTCAGCAACACAATCGCCTCCTACGCAGGTGATGGAGCGGCCTAGTGAGCCGAGTACTCCGTACAGGATCCCGGATTATGTCTTTGCGAGGAAACCATCCACAGCCCCGATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACCAGAGAACAGTTTGCCTTTTTAGGTAAATCTGGTGAGTTGGGTTTATCTGGAGAACAGAACATGTCTGGTCCATATATAGACTTCTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAATTTTCCCAAAACGGCGGCAATTTGGATGAGGGCCCAAATCCGAGAGTAACTGAAGCAAAAGCCGTAGAGACTATGAGAGAGGTTATAAGGAAATTGCCGAAAATGACAACAAAGCAAGTCCATCATCTTCGGCGGATAATCACAGCAAAGGAAGCCCGTCGCCCAGCGTCCGAAATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

29.84

Weight (kDa)

5.07

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	4 cut(s)	318, 409, 678, 796
AclWI	GGATC	2 cut(s)	433, 446
AcsI	RAATTY	2 cut(s)	103, 662
AcuI	CTGAAG	2 cut(s)	45, 735
AfaI	GTAC	4 cut(s)	193, 289, 427, 434
AfiI	CCNNNNNNNGG	1 cut(s)	646
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	314, 662
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	294, 343
AluI	AGCT	2 cut(s)	294, 343
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	2 cut(s)	433, 446
AlwNI	CAGNNNCTG	2 cut(s)	83, 140
Ama87I	CYCGRG	2 cut(s)	112, 631
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	3 cut(s)	199, 410, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	3 cut(s)	77, 340, 494
ApoI	RAATTY	2 cut(s)	103, 662
AspS9I	GGNCC	5 cut(s)	109, 200, 614, 694, 695
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	5 cut(s)	155, 362, 412, 535, 590
AvaI	CYCGRG	2 cut(s)	112, 631
AvaII	GGWCC	2 cut(s)	109, 614
BaeGI	GKGCMC	1 cut(s)	698
BamHI	GGATCC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	698
BbvI	GCAGC	3 cut(s)	89, 352, 481
BccI	CCATC	7 cut(s)	43, 61, 397, 475, 475, 520, 792
BceAI	ACGGC	2 cut(s)	691, 710
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	2 cut(s)	156, 842
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
BlsI	GCNGC	6 cut(s)	79, 320, 342, 411, 496, 680
BmcAI	AGTACT	2 cut(s)	193, 427
Bme1390I	CCNGG	2 cut(s)	362, 443
Bme18I	GGWCC	2 cut(s)	109, 614
BmeT110I	CYCGRG	2 cut(s)	112, 631
BmgT120I	GGNCC	5 cut(s)	109, 200, 614, 694, 695
BmiI	GGNNCC	3 cut(s)	111, 440, 696
BmrFI	CCNGG	2 cut(s)	362, 443
BmsI	GCATC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse3DI	GCAATG	2 cut(s)	229, 373
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	467, 694
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	2 cut(s)	229, 373
BseMII	CTCAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	3 cut(s)	89, 352, 481
BseYI	CCCAGC	1 cut(s)	826
BshFI	GGCC	3 cut(s)	201, 412, 696
BsiHKCI	CYCGRG	2 cut(s)	112, 631
BsiSI	CCGG	2 cut(s)	443, 647
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	201, 412, 696
BsoBI	CYCGRG	2 cut(s)	112, 631
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	4 cut(s)	318, 409, 678, 796
BspANI	GGCC	3 cut(s)	201, 412, 696
BspCNI	CTCAG	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	111, 440, 696
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	433, 446
BspTI	CTTAAG	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	229, 373
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	75, 160
BstDEI	CTNAG	3 cut(s)	284, 330, 336
BstF5I	GGATG	2 cut(s)	467, 694
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 418, 815
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	360, 441
BstSFI	CTRYAG	2 cut(s)	156, 842
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	3 cut(s)	89, 352, 481
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	201, 412, 696
BtsCI	GGATG	2 cut(s)	467, 694
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	75, 160
CaiI	CAGNNNCTG	2 cut(s)	83, 140
Cfr13I	GGNCC	5 cut(s)	109, 200, 614, 694, 695
CseI	GACGC	1 cut(s)	819
Csp6I	GTAC	4 cut(s)	192, 288, 426, 433
CviAII	CATG	3 cut(s)	68, 535, 607
CviQI	GTAC	4 cut(s)	192, 288, 426, 433
DdeI	CTNAG	3 cut(s)	284, 330, 336
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	2 cut(s)	109, 614
Eco57I	CTGAAG	2 cut(s)	45, 735
Eco88I	CYCGRG	2 cut(s)	112, 631
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	698
FaeI	CATG	3 cut(s)	71, 538, 610
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	67, 534, 606
Fnu4HI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
FokI	GGATG	2 cut(s)	454, 701
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
GsaI	CCCAGC	1 cut(s)	830
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	201, 412, 696
HapII	CCGG	2 cut(s)	443, 647
HgaI	GACGC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	71, 538, 610
HinfI	GANTC	4 cut(s)	5, 259, 371, 506
HpaII	CCGG	2 cut(s)	443, 647
HphI	GGTGA	5 cut(s)	155, 362, 412, 535, 590
Hpy188I	TCNGA	6 cut(s)	64, 109, 241, 525, 705, 835
Hpy188III	TCNNGA	4 cut(s)	206, 594, 631, 647
Hpy99I	CGWCG	1 cut(s)	825
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	73, 152, 158, 188, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 418, 815
HpyF3I	CTNAG	3 cut(s)	284, 330, 336
Hsp92II	CATG	3 cut(s)	71, 538, 610
Kpn2I	TCCGGA	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	3 cut(s)	89, 352, 481
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	4 cut(s)	130, 530, 635, 709
MalI	GATC	1 cut(s)	440
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	1 cut(s)	438
MboII	GAAGA	4 cut(s)	30, 51, 272, 782
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	4 cut(s)	103, 662, 682, 755
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	52, 213, 298, 399, 453, 654, 685, 736
MroI	TCCGGA	1 cut(s)	646
MseI	TTAA	3 cut(s)	119, 170, 345
MslI	CAYNNNNRTG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	2 cut(s)	443, 647
MspR9I	CCNGG	2 cut(s)	362, 443
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	394, 418, 815
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	71, 538, 610
NlaIV	GGNNCC	3 cut(s)	111, 440, 696
NmeAIII	GCCGAG	1 cut(s)	447
NspI	RCATGY	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	5, 371, 506
PflFI	GACNNNGTC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	6 cut(s)	79, 320, 342, 411, 496, 680
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	111, 440, 696
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	5 cut(s)	109, 200, 614, 694, 695
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	2 cut(s)	83, 140
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	4 cut(s)	193, 289, 427, 434
RsaNI	GTAC	4 cut(s)	192, 288, 426, 433
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	119, 170, 345
SatI	GCNGC	6 cut(s)	78, 319, 341, 410, 495, 679
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	5 cut(s)	109, 200, 614, 694, 695
ScaI	AGTACT	2 cut(s)	193, 427
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	362, 443
SduI	GDGCHC	1 cut(s)	698
SetI	ASST	7 cut(s)	139, 296, 331, 345, 402, 571, 747
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	2 cut(s)	156, 842
Sfr274I	CTCGAG	1 cut(s)	631
SinI	GGWCC	2 cut(s)	109, 614
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	169, 631
SmoI	CTYRAG	2 cut(s)	169, 631
Sse9I	AATT	4 cut(s)	103, 662, 682, 755
SsiI	CCGC	4 cut(s)	318, 409, 678, 796
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	360, 441
TaaI	ACNGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	323, 632
TasI	AATT	4 cut(s)	103, 662, 682, 755
TatI	WGTACW	3 cut(s)	191, 287, 425
TauI	GCSGC	3 cut(s)	321, 412, 681
TfiI	GAWTC	3 cut(s)	5, 371, 506
Tru1I	TTAA	3 cut(s)	119, 170, 345
Tru9I	TTAA	3 cut(s)	119, 170, 345
TseI	GCWGC	3 cut(s)	77, 340, 494
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	2 cut(s)	252, 420
Tth111I	GACNNNGTC	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	109, 614
XapI	RAATTY	2 cut(s)	103, 662
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	631
XspI	CTAG	1 cut(s)	414
ZrmI	AGTACT	2 cut(s)	193, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.