Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

58252676 .. 58256481

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0454100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCGGTGTTCGGAGCAAAATGGCAGGGTGTGAGATCCATGTGCATGATATTGTTCAACTTTGCGGTTGCTTTTGTATTTGTTAAGGCCGAGAGAGGGCTCAGGCTCGAAAGCTCGAGGTTCCATGGAGCAAAGGGATCTGTTTCCGGCAATGATTATCTTTTCCGAGCTGTAAATTTCCTATGGCAATCGGATAAAGTGGGATACGAACACGTTTGGCCGGAGATGAAGTTCGGATGGGAAATTGTTGTGGGGAGTGCTATTGGATTCTTTGGAGCAGCGTTCGGGAGTGTCGGCGGTGTAGGTGGTGGTGGCATTTTTGTTCCCATGCTTAGCCTGATTGTTGGGTTTGATCCAAAGTCGGCAACAGCTATATCGAAATGTATGATCATGGGTGCAGCTGCCTCAACTGTTTACTATAATCTCAAGCTAAGGCACCCCACGCTTGATATGCCGATTATCGACTATGATTTGGCAGTACTTATCCAACCGATGCTCATGATGGGAATTAGTATAGGAGTGGCATTCAATGTGATCTTTGCTGACTGGATGGTCACAGTTTTGCTTATTGTTCTTTTTATAGGCACATCAACAAAAGCATTCTTCAAGGGTGTTGATACATGGAAAAAGGAAACTATTATGAAAAGGGAAGCCGCAAAGCGACTGGAGTCAAATGGATCTGGTGTTGATGCAGAATACAAGCCTCTTCCAGCTGGCCCAAAAAATGACCAACAAAAGGAGCCAGAGGTCTCTTTTGTGGAGAATGTTTACTGGAAAGAGTTTGGACTTCTGGTTTTTGTCTGGGTCGCATTTCTTGCACTGCAAATTGCCAAGCATCACACATCTACTTGTTCGACAGCCTATTGGATAGTGAATTTGTTACAGATCCCAGTTTCTTTAGGTGTATCTACGTATGAGGCAGTTGGCCTATACAAGGGACGGAAAGTAATAGCATCCAAGGGAGAGGAAGGGACAAATTGGCGAGTGCACCAGCTGATTTCCTACTGTCTTATGGGTGTCGTTGCAGGAATTGTAGGAGGATTGCTTGGACTAGGTGGAGGATTCATTATGGGTCCACTTTTTTTGGAGCTCGGACTCCCCCCTCAGGTCTCCAGTGCCACAGCTACCTTTGCAATGATGTTCTCATCCTCTATGTCTGTTGTAGAATACTACCTTCTAAAACGATTTCCAGTTCCTTATGCTGCTTACTATACAGCTGTGGCTACCATTGCGGCCATTATAGGACAGCATGTTGTGAGGAGGATGATCACGATCTTTGGGAGGGCATCATTGATCATTTTCATTCTAGCTTTTATGATTTTCGTCAGTGCAATCTCACTCGGTGGGGTTGGCATATCGAACATGATTTGGAAGATAAACCACAATGAATACATGGGTTTCGAAAACCTTTGCAAGTATGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

52.03

Weight (kDa)

9.05

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	87 - 204	1.2e-11	Sulfite exporter TauE/SafE
TauE	PF01925	336 - 442	3.4e-12	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	435
AciI	CCGC	5 cut(s)	5, 65, 297, 654, 1232
AclWI	GGATC	5 cut(s)	30, 145, 347, 685, 880
AcoI	YGGCCR	2 cut(s)	218, 1233
AcsI	RAATTY	2 cut(s)	175, 874
AdeI	CACNNNGTG	1 cut(s)	1343
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	4 cut(s)	96, 736, 934, 1105
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	58, 529, 607
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
Alw21I	GWGCWC	2 cut(s)	990, 1092
Alw26I	GTCTC	2 cut(s)	754, 1114
Alw44I	GTGCAC	1 cut(s)	986
AlwI	GGATC	5 cut(s)	30, 145, 347, 685, 880
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	5 cut(s)	87, 218, 715, 925, 1233
ApaLI	GTGCAC	1 cut(s)	986
ApeKI	GCWGC	4 cut(s)	278, 398, 401, 1202
ApoI	RAATTY	2 cut(s)	175, 874
AspS9I	GGNCC	2 cut(s)	716, 1073
AsuII	TTCGAA	1 cut(s)	1401
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	1073
AxyI	CCTNAGG	1 cut(s)	1104
BaeGI	GKGCMC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	2 cut(s)	102, 1092
Bbv12I	GWGCWC	2 cut(s)	990, 1092
BbvI	GCAGC	4 cut(s)	290, 388, 410, 1189
BccI	CCATC	4 cut(s)	231, 496, 544, 1415
BciVI	GTATCC	1 cut(s)	197
BclI	TGATCA	3 cut(s)	387, 1266, 1293
BcoDI	GTCTC	2 cut(s)	754, 1114
BfaI	CTAG	2 cut(s)	1052, 1307
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	6 cut(s)	279, 399, 402, 654, 1203, 1233
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	6 cut(s)	280, 400, 403, 655, 1204, 1234
BmcAI	AGTACT	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	1073
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	716, 1073
BmiI	GGNNCC	4 cut(s)	122, 437, 741, 1074
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	5 cut(s)	483, 679, 844, 962, 1295
BmuI	ACTGGG	1 cut(s)	884
BoxI	GACNNNNGTC	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	686, 1096
Bpu10I	CCTNAGC	2 cut(s)	101, 431
Bpu1102I	GCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	1401
BpuEI	CTTGAG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	1271
BsaI	GGTCTC	2 cut(s)	754, 1114
BsaJI	CCNNGG	2 cut(s)	124, 957
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 736, 934, 1105
Bse1I	ACTGG	6 cut(s)	551, 669, 776, 890, 1113, 1190
Bse21I	CCTNAGG	1 cut(s)	1104
Bse3DI	GCAATG	3 cut(s)	157, 1140, 1227
Bse8I	GATNNNNATC	1 cut(s)	1271
BseDI	CCNNGG	2 cut(s)	124, 957
BseGI	GGATG	5 cut(s)	242, 555, 953, 1145, 1269
BseJI	GATNNNNATC	1 cut(s)	1271
BseLI	CCNNNNNNNGG	4 cut(s)	96, 736, 934, 1105
BseMI	GCAATG	3 cut(s)	157, 1140, 1227
BseMII	CTCAG	2 cut(s)	115, 1118
BseNI	ACTGG	6 cut(s)	551, 669, 776, 890, 1113, 1190
BseRI	GAGGAG	1 cut(s)	1273
BseSI	GKGCMC	1 cut(s)	990
BseXI	GCAGC	4 cut(s)	290, 388, 410, 1189
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	5 cut(s)	89, 220, 717, 927, 1235
BshNI	GGYRCC	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	990, 1092
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	147, 221
BslFI	GGGAC	2 cut(s)	951, 985
BslI	CCNNNNNNNGG	4 cut(s)	96, 736, 934, 1105
BsmAI	GTCTC	2 cut(s)	754, 1114
BsmFI	GGGAC	2 cut(s)	951, 985
BsmI	GAATGC	2 cut(s)	524, 599
BsnI	GGCC	5 cut(s)	89, 220, 717, 927, 1235
Bso31I	GGTCTC	2 cut(s)	754, 1114
BsoBI	CYCGRG	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	1401
Bsp1286I	GDGCHC	3 cut(s)	102, 990, 1092
Bsp1720I	GCTNAGC	1 cut(s)	332
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	5 cut(s)	5, 65, 297, 654, 1232
BspANI	GGCC	5 cut(s)	89, 220, 717, 927, 1235
BspCNI	CTCAG	2 cut(s)	114, 1117
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	122, 437, 741, 1074
BspPI	GGATC	5 cut(s)	30, 145, 347, 685, 880
BspT104I	TTCGAA	1 cut(s)	1401
BspT107I	GGYRCC	1 cut(s)	435
BspTNI	GGTCTC	2 cut(s)	754, 1114
BsrDI	GCAATG	3 cut(s)	157, 1140, 1227
BsrI	ACTGG	6 cut(s)	551, 669, 776, 890, 1113, 1190
BssECI	CCNNGG	2 cut(s)	124, 957
BssT1I	CCWWGG	2 cut(s)	124, 957
Bst4CI	ACNGT	3 cut(s)	412, 559, 1007
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	912
BstBI	TTCGAA	1 cut(s)	1401
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	4 cut(s)	101, 332, 431, 1104
BstDSI	CCRYGG	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	932
BstF5I	GGATG	5 cut(s)	242, 555, 953, 1145, 1269
BstMAI	GTCTC	2 cut(s)	754, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	442, 451, 815, 1130, 1229
BstNSI	RCATGY	1 cut(s)	1253
BstPAI	GACNNNNGTC	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	990
BstSNI	TACGTA	1 cut(s)	912
BstV1I	GCAGC	4 cut(s)	290, 388, 410, 1189
BstX2I	RGATCY	4 cut(s)	35, 137, 677, 885
BstYI	RGATCY	4 cut(s)	35, 137, 677, 885
Bsu36I	CCTNAGG	1 cut(s)	1104
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	5 cut(s)	89, 220, 717, 927, 1235
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	5 cut(s)	242, 555, 953, 1145, 1269
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	3 cut(s)	818, 1120, 1333
Cac8I	GCNNGC	1 cut(s)	715
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	716, 1073
Csp6I	GTAC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	1065, 1100
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	4 cut(s)	101, 332, 431, 1104
DraIII	CACNNNGTG	1 cut(s)	1343
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	2 cut(s)	218, 1233
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	1090
Eco105I	TACGTA	1 cut(s)	912
Eco130I	CCWWGG	2 cut(s)	124, 957
Eco24I	GRGCYC	2 cut(s)	102, 1092
Eco31I	GGTCTC	2 cut(s)	754, 1114
Eco47I	GGWCC	1 cut(s)	1073
Eco53kI	GAGCTC	1 cut(s)	1090
Eco81I	CCTNAGG	1 cut(s)	1104
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	1090
EcoNI	CCTNNNNNAGG	1 cut(s)	932
EcoT14I	CCWWGG	2 cut(s)	124, 957
EcoT38I	GRGCYC	2 cut(s)	102, 1092
ErhI	CCWWGG	2 cut(s)	124, 957
FaqI	GGGAC	2 cut(s)	951, 985
FbaI	TGATCA	3 cut(s)	387, 1266, 1293
Fnu4HI	GCNGC	6 cut(s)	279, 399, 402, 654, 1203, 1233
FokI	GGATG	5 cut(s)	249, 562, 940, 1132, 1276
FriOI	GRGCYC	2 cut(s)	102, 1092
Fsp4HI	GCNGC	6 cut(s)	279, 399, 402, 654, 1203, 1233
FspBI	CTAG	2 cut(s)	1052, 1307
GluI	GCNGC	6 cut(s)	279, 399, 402, 654, 1203, 1233
GsuI	CTGGAG	2 cut(s)	686, 1096
HaeIII	GGCC	5 cut(s)	89, 220, 717, 927, 1235
HapII	CCGG	2 cut(s)	147, 221
HinfI	GANTC	4 cut(s)	267, 668, 1062, 1095
HpaII	CCGG	2 cut(s)	147, 221
Hpy166II	GTNNAC	4 cut(s)	415, 769, 988, 1076
Hpy188I	TCNGA	5 cut(s)	14, 167, 193, 236, 1094
Hpy188III	TCNNGA	3 cut(s)	286, 499, 1270
Hpy8I	GTNNAC	4 cut(s)	415, 769, 988, 1076
HpyAV	CCTTC	2 cut(s)	962, 1184
HpyCH4III	ACNGT	3 cut(s)	412, 559, 1007
HpyCH4IV	ACGT	2 cut(s)	213, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	442, 451, 815, 1130, 1229
HpyF3I	CTNAG	4 cut(s)	101, 332, 431, 1104
HpySE526I	ACGT	2 cut(s)	213, 911
Ksp22I	TGATCA	3 cut(s)	387, 1266, 1293
LmnI	GCTCC	5 cut(s)	14, 128, 275, 739, 1087
Lsp1109I	GCAGC	4 cut(s)	290, 388, 410, 1189
LweI	GCATC	5 cut(s)	483, 679, 844, 962, 1295
MaeI	CTAG	2 cut(s)	1052, 1307
MaeII	ACGT	2 cut(s)	213, 911
MaeIII	GTNAC	2 cut(s)	553, 879
MboII	GAAGA	3 cut(s)	595, 698, 1384
MflI	RGATCY	4 cut(s)	35, 137, 677, 885
MhlI	GDGCHC	3 cut(s)	102, 990, 1092
MluCI	AATT	7 cut(s)	175, 243, 507, 825, 874, 976, 1029
MlyI	GAGTC	2 cut(s)	677, 1089
MmeI	TCCRAC	1 cut(s)	511
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	4 cut(s)	401, 713, 994, 1217
MspI	CCGG	2 cut(s)	147, 221
Mva1269I	GAATGC	2 cut(s)	524, 599
MwoI	GCNNNNNNNGC	5 cut(s)	442, 451, 815, 1130, 1229
NcoI	CCATGG	1 cut(s)	124
NlaIV	GGNNCC	4 cut(s)	122, 437, 741, 1074
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	553
NspI	RCATGY	1 cut(s)	1253
NspV	TTCGAA	1 cut(s)	1401
PaeR7I	CTCGAG	1 cut(s)	115
PagI	TCATGA	1 cut(s)	498
PctI	GAATGC	2 cut(s)	524, 599
PfeI	GAWTC	2 cut(s)	267, 1062
PkrI	GCNGC	6 cut(s)	280, 400, 403, 655, 1204, 1234
PleI	GAGTC	2 cut(s)	676, 1089
PpsI	GAGTC	2 cut(s)	676, 1089
Ppu21I	YACGTR	1 cut(s)	912
PshAI	GACNNNNGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	1092
PspN4I	GGNNCC	4 cut(s)	122, 437, 741, 1074
PspPI	GGNCC	2 cut(s)	716, 1073
PspXI	VCTCGAGB	1 cut(s)	115
PsuI	RGATCY	4 cut(s)	35, 137, 677, 885
PvuII	CAGCTG	4 cut(s)	401, 713, 994, 1217
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	1092
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	6 cut(s)	279, 399, 402, 654, 1203, 1233
Sau96I	GGNCC	2 cut(s)	716, 1073
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	2 cut(s)	677, 1089
SduI	GDGCHC	3 cut(s)	102, 990, 1092
SfaNI	GCATC	5 cut(s)	483, 679, 844, 962, 1295
Sfr274I	CTCGAG	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	1401
SinI	GGWCC	1 cut(s)	1073
SlaI	CTCGAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	115, 425
SmoI	CTYRAG	2 cut(s)	115, 425
SnaBI	TACGTA	1 cut(s)	912
Sse9I	AATT	7 cut(s)	175, 243, 507, 825, 874, 976, 1029
SsiI	CCGC	5 cut(s)	5, 65, 297, 654, 1232
SspMI	CTAG	2 cut(s)	1052, 1307
SstI	GAGCTC	1 cut(s)	1092
StyI	CCWWGG	2 cut(s)	124, 957
TaaI	ACNGT	3 cut(s)	412, 559, 1007
TaiI	ACGT	2 cut(s)	216, 914
TaqI	TCGA	7 cut(s)	108, 116, 377, 462, 854, 1358, 1401
TasI	AATT	7 cut(s)	175, 243, 507, 825, 874, 976, 1029
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	2 cut(s)	656, 1235
TfiI	GAWTC	2 cut(s)	267, 1062
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	3 cut(s)	825, 1120, 1333
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	4 cut(s)	278, 398, 401, 1202
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	5 cut(s)	242, 656, 1054, 1291, 1401
TspGWI	ACGGA	1 cut(s)	955
TspRI	CASTG	3 cut(s)	825, 1120, 1333
VneI	GTGCAC	1 cut(s)	986
VpaK11BI	GGWCC	1 cut(s)	1073
XagI	CCTNNNNNAGG	1 cut(s)	932
XapI	RAATTY	2 cut(s)	175, 874
XceI	RCATGY	1 cut(s)	1253
XhoI	CTCGAG	1 cut(s)	115
XspI	CTAG	2 cut(s)	1052, 1307
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.