Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010088

Physical Location & Seq

Genomic Coordinates Forward (+)

35612529 .. 35614327

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1225400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGATCGGCAGATGAGGGAAATAGGTTAAGCCCTCCCTCCTCTTCCCCCTCCACCTCGTTACCAACATTTTTGGACACTCCCCACGAAGAGTCCACCACGGAAGCAGCCCCCAAAACCACAACGACCTTGCAACAACCTGATCAGGACAACAATGTCGTAGAAACTTTGGATCCCGGATTCAATCAGACAACATTACAAGGTGTGGAACATGGAGATGGAACAAGAGACAGCGATACGAAGAAAAGCCCTGCAGCTACAACTCACTGTGGAATTGATATTGCAGGCAAAGGAAGCAGCGGGTCAGGCGGATTAGACCCGTCCAATCAGTTGAATGAGTTGAGGACGGATCCAATTACCGCTCTAGGCGAAGCTAACACTTCTACCGTAGGAGAAAATTTAAGTTACTCTCAGGTATCTGATTGTTCCGAAGCCTTTGAATTGGGTGCAAATGCAGCCACTGACGAGGATTTTGCCGCCTATGCGGGCACAGAGCCCGCACAGGACGTGCAACCTAGTGATGGACTAGAAGGGTCGCATTCTCAACCAGCAGTTGATGCAAGCGGTTCAGCAACACAATCTCCGCCAACGCAGGTGATGGAGAGGCCAGGCGACCCTACATCCTCACCGTATAGGATTCCGGATTACGTGTTTGCTAGGAACAAATCAACATCCCCAATGGAATGGAGCCCCGCTTCCAACGAGTCATTGTTCAGCATTCAGATGGGAAATATGAGTTTTACCAGGGACGAGTTTAACTGGTTGTGTAAATCCGGTGAATTGGGTTTACCTGGTGAGGTAAGTTACTTGCCTAGTGGTCCATGCAGCATTGACTTCACAAGCAACCAGCCTCCGGCTAAGCAAACGGCGCAATCAGCAGAGAATGCTTCCAATAACAAAGGCAATGTGAAGGAGGAGCCGAGCCTGAGGGCAACCGAAGCGAAAGCTGTGGAAACCATGAGAGAAGTTATAAGGGAAAATGCAGAAAGTCATGAGAAGGAGAAGGCACCCACCGCGGGCGAGGGCGGCAAGTATCATTCAGCTTGCCTCTCTCATGTTTCGGATGGAAGTACAAAATCTTTTGCATTCCCAATATTGGCAGGGGACGGAGACATAAATGTTTCGCTACGGGGAGAAGGAGCGAAACACAAGCACCAACCGGGGTCAAAGCCAACGTCTCAGCGACAATCGCAGCCGCAGACACGGGAAGAAACACCGGAAGCATCTTCTCAGGCCTCGAAACCAACCCCAATTGAACCCAAGTGCAGATGGGGGCTGTCTTGCTTCTCTTGTTGCCCATCATGCTGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

438

Amino Acids

46.1

Weight (kDa)

4.66

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74220 AT2G03630
fragaria_vesca	FvH4_5g13780
malus_domestica	MD06G1225400.v1.1 MD14G1212300.v1.1
prunus_persica	Prupe.5G205600_v2.0.a1
pyrus_communis	pycom14g17590
rosa_chinensis	RchiOBHm_Chr7g0183151
rosa_laevigata	RLG00000005072
rosa_multiflora	Rmu_co8215104.1_g000001 Rmu_ssc0000111.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270710
rosa_rugosa	Rorug06G0454100 Rorug06G0454200 Rorug06G0454300 Rorug06G0454400
rosa_samantha	Rh7AG056700 Rh7BG056400 Rh7CG057400 Rh7DG056300
rosa_wichuraiana	Rw7G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	971
AarI	CACCTGC	1 cut(s)	583
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	1006
AccBSI	CCGCTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	1016
AccIII	TCCGGA	1 cut(s)	640
AclWI	GGATC	5 cut(s)	13, 167, 180, 344, 357
AcsI	RAATTY	1 cut(s)	397
AfaI	GTAC	2 cut(s)	1072, 1309
AfiI	CCNNNNNNNGG	4 cut(s)	521, 853, 1016, 1096
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	4 cut(s)	184, 334, 440, 1256
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	3 cut(s)	607, 743, 790
AluBI	AGCT	4 cut(s)	257, 374, 947, 1043
AluI	AGCT	4 cut(s)	257, 374, 947, 1043
Alw26I	GTCTC	3 cut(s)	222, 1104, 1182
AlwI	GGATC	5 cut(s)	13, 167, 180, 344, 357
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	605, 1233
ApeKI	GCWGC	6 cut(s)	107, 254, 297, 455, 825, 1192
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	4 cut(s)	455, 487, 1160, 1192
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	818
AsuC2I	CCSGG	2 cut(s)	177, 1161
AsuHPI	GGTGA	4 cut(s)	607, 618, 788, 806
AvaII	GGWCC	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	926
BaeGI	GKGCMC	1 cut(s)	491
BamHI	GGATCC	2 cut(s)	172, 349
BanI	GGYRCC	1 cut(s)	1006
BanII	GRGCYC	2 cut(s)	498, 692
BbvI	GCAGC	6 cut(s)	119, 266, 309, 467, 837, 1204
BccI	CCATC	7 cut(s)	212, 515, 592, 718, 1058, 1263, 1306
BceAI	ACGGC	1 cut(s)	882
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	3 cut(s)	609, 745, 792
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	177, 1161
BcoDI	GTCTC	3 cut(s)	222, 1104, 1182
BfaI	CTAG	5 cut(s)	365, 516, 527, 657, 813
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	9 cut(s)	108, 255, 298, 456, 477, 826, 1027, 1193, 1196
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	9 cut(s)	109, 256, 299, 457, 478, 827, 1028, 1194, 1197
Bme1390I	CCNGG	5 cut(s)	177, 609, 745, 792, 1161
Bme18I	GGWCC	1 cut(s)	818
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	5 cut(s)	174, 351, 689, 918, 1008
BmrFI	CCNGG	5 cut(s)	177, 609, 745, 792, 1161
BmsI	GCATC	2 cut(s)	547, 1232
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuMI	CCSGG	2 cut(s)	177, 1161
BsaAI	YACGTR	1 cut(s)	649
BsaJI	CCNNGG	4 cut(s)	99, 744, 1014, 1160
BsaWI	WCCGGW	3 cut(s)	640, 773, 1216
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	4 cut(s)	521, 853, 1016, 1096
Bse1I	ACTGG	1 cut(s)	764
Bse21I	CCTNAGG	1 cut(s)	926
Bse3DI	GCAATG	1 cut(s)	910
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	3 cut(s)	609, 745, 792
BseDI	CCNNGG	4 cut(s)	99, 744, 1014, 1160
BseGI	GGATG	3 cut(s)	620, 671, 1069
BseLI	CCNNNNNNNGG	4 cut(s)	521, 853, 1016, 1096
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	4 cut(s)	425, 917, 1193, 1244
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	2 cut(s)	31, 929
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	6 cut(s)	119, 266, 309, 467, 837, 1204
BsgI	GTGCAG	1 cut(s)	1285
Bsh1236I	CGCG	1 cut(s)	1016
BshFI	GGCC	2 cut(s)	607, 1235
BshNI	GGYRCC	1 cut(s)	1006
BsiSI	CCGG	6 cut(s)	177, 641, 774, 854, 1160, 1217
BslFI	GGGAC	2 cut(s)	761, 1118
BslI	CCNNNNNNNGG	4 cut(s)	521, 853, 1016, 1096
BsmAI	GTCTC	3 cut(s)	222, 1104, 1182
BsmBI	CGTCTC	1 cut(s)	1182
BsmFI	GGGAC	2 cut(s)	761, 1118
BsmI	GAATGC	4 cut(s)	538, 717, 889, 1085
BsnI	GGCC	2 cut(s)	607, 1235
Bsp1286I	GDGCHC	3 cut(s)	491, 498, 692
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	5, 142, 172, 349
Bsp1720I	GCTNAGC	1 cut(s)	858
BspANI	GGCC	2 cut(s)	607, 1235
BspCNI	CTCAG	4 cut(s)	424, 918, 1192, 1243
BspEI	TCCGGA	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	1016
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	5 cut(s)	174, 351, 689, 918, 1008
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	5 cut(s)	13, 167, 180, 344, 357
BspT107I	GGYRCC	1 cut(s)	1006
BsrBI	CCGCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	4 cut(s)	99, 744, 1014, 1160
BssMI	GATC	4 cut(s)	5, 142, 172, 349
Bst2UI	CCWGG	3 cut(s)	609, 745, 792
Bst4CI	ACNGT	3 cut(s)	269, 388, 630
Bst6I	CTCTTC	2 cut(s)	49, 84
BstAPI	GCANNNNNTGC	2 cut(s)	557, 884
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	6 cut(s)	286, 487, 498, 562, 1018, 1045
BstDEI	CTNAG	6 cut(s)	411, 858, 926, 1179, 1230, 1311
BstDSI	CCRYGG	2 cut(s)	99, 1014
BstF5I	GGATG	3 cut(s)	620, 671, 1069
BstFNI	CGCG	1 cut(s)	1016
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	4 cut(s)	8, 145, 175, 352
BstMAI	GTCTC	3 cut(s)	222, 1104, 1182
BstMBI	GATC	4 cut(s)	5, 142, 172, 349
BstNI	CCWGG	3 cut(s)	609, 745, 792
BstSCI	CCNGG	5 cut(s)	175, 607, 743, 790, 1159
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	1016
BstV1I	GCAGC	6 cut(s)	119, 266, 309, 467, 837, 1204
BstX2I	RGATCY	2 cut(s)	172, 349
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	2 cut(s)	172, 349
Bsu36I	CCTNAGG	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	607, 1235
BtgI	CCRYGG	2 cut(s)	99, 1014
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	620, 671, 1069
BtsIMutI	CAGTG	2 cut(s)	265, 459
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	6 cut(s)	286, 487, 498, 562, 1018, 1045
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	991
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	818
Cfr42I	CCGCGG	1 cut(s)	1017
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	1071, 1308
CviAII	CATG	6 cut(s)	212, 822, 958, 992, 1055, 1302
CviQI	GTAC	2 cut(s)	1071, 1308
DdeI	CTNAG	6 cut(s)	411, 858, 926, 1179, 1230, 1311
DpnI	GATC	4 cut(s)	7, 144, 174, 351
DpnII	GATC	4 cut(s)	5, 142, 172, 349
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	49, 84
EarI	CTCTTC	2 cut(s)	49, 84
EciI	GGCGGA	2 cut(s)	324, 573
Eco147I	AGGCCT	1 cut(s)	1235
Eco24I	GRGCYC	2 cut(s)	498, 692
Eco47I	GGWCC	1 cut(s)	818
Eco81I	CCTNAGG	1 cut(s)	926
EcoRII	CCWGG	3 cut(s)	607, 743, 790
EcoT38I	GRGCYC	2 cut(s)	498, 692
Esp3I	CGTCTC	1 cut(s)	1182
FaeI	CATG	6 cut(s)	215, 825, 961, 995, 1058, 1305
FaqI	GGGAC	2 cut(s)	761, 1118
FatI	CATG	6 cut(s)	211, 821, 957, 991, 1054, 1301
FauI	CCCGC	5 cut(s)	293, 478, 505, 700, 1009
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	9 cut(s)	108, 255, 298, 456, 477, 826, 1027, 1193, 1196
FokI	GGATG	3 cut(s)	607, 658, 1076
FriOI	GRGCYC	2 cut(s)	498, 692
Fsp4HI	GCNGC	9 cut(s)	108, 255, 298, 456, 477, 826, 1027, 1193, 1196
FspBI	CTAG	5 cut(s)	365, 516, 527, 657, 813
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	9 cut(s)	108, 255, 298, 456, 477, 826, 1027, 1193, 1196
HaeIII	GGCC	2 cut(s)	607, 1235
HapII	CCGG	6 cut(s)	177, 641, 774, 854, 1160, 1217
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	6 cut(s)	215, 825, 961, 995, 1058, 1305
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HinfI	GANTC	4 cut(s)	92, 180, 637, 704
HpaII	CCGG	6 cut(s)	177, 641, 774, 854, 1160, 1217
HphI	GGTGA	4 cut(s)	607, 618, 788, 806
Hpy166II	GTNNAC	2 cut(s)	96, 788
Hpy188I	TCNGA	5 cut(s)	189, 421, 430, 723, 1063
Hpy188III	TCNNGA	3 cut(s)	146, 641, 992
Hpy8I	GTNNAC	2 cut(s)	96, 788
HpyAV	CCTTC	5 cut(s)	524, 904, 991, 997, 1130
HpyCH4III	ACNGT	3 cut(s)	269, 388, 630
HpyCH4IV	ACGT	3 cut(s)	507, 648, 1175
HpyF3I	CTNAG	6 cut(s)	411, 858, 926, 1179, 1230, 1311
HpySE526I	ACGT	3 cut(s)	507, 648, 1175
Hsp92II	CATG	6 cut(s)	215, 825, 961, 995, 1058, 1305
HspAI	GCGC	1 cut(s)	869
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	1017
Kzo9I	GATC	4 cut(s)	5, 142, 172, 349
LmnI	GCTCC	3 cut(s)	687, 916, 1139
Lsp1109I	GCAGC	6 cut(s)	119, 266, 309, 467, 837, 1204
LweI	GCATC	2 cut(s)	547, 1232
MabI	ACCWGGT	1 cut(s)	790
MaeI	CTAG	5 cut(s)	365, 516, 527, 657, 813
MaeII	ACGT	3 cut(s)	507, 648, 1175
MaeIII	GTNAC	3 cut(s)	60, 404, 803
MalI	GATC	4 cut(s)	7, 144, 174, 351
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	5, 142, 172, 349
MboII	GAAGA	5 cut(s)	36, 101, 253, 1218, 1220
MfeI	CAATTG	1 cut(s)	1251
MflI	RGATCY	2 cut(s)	172, 349
MhlI	GDGCHC	3 cut(s)	491, 498, 692
MluCI	AATT	6 cut(s)	273, 354, 397, 440, 779, 1251
MlyI	GAGTC	2 cut(s)	101, 713
MmeI	TCCRAC	1 cut(s)	723
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	3 cut(s)	29, 401, 756
MslI	CAYNNNNRTG	2 cut(s)	216, 722
MspA1I	CMGCKG	2 cut(s)	300, 1016
MspI	CCGG	6 cut(s)	177, 641, 774, 854, 1160, 1217
MspR9I	CCNGG	5 cut(s)	177, 609, 745, 792, 1161
MunI	CAATTG	1 cut(s)	1251
Mva1269I	GAATGC	4 cut(s)	538, 717, 889, 1085
MvaI	CCWGG	3 cut(s)	609, 745, 792
MvnI	CGCG	1 cut(s)	1016
NciI	CCSGG	2 cut(s)	177, 1161
NdeII	GATC	4 cut(s)	5, 142, 172, 349
NlaIII	CATG	6 cut(s)	215, 825, 961, 995, 1058, 1305
NlaIV	GGNNCC	5 cut(s)	174, 351, 689, 918, 1008
NmeAIII	GCCGAG	1 cut(s)	945
PagI	TCATGA	1 cut(s)	991
PaqCI	CACCTGC	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	1235
PctI	GAATGC	4 cut(s)	538, 717, 889, 1085
PfeI	GAWTC	2 cut(s)	180, 637
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	9 cut(s)	109, 256, 299, 457, 478, 827, 1028, 1194, 1197
PleI	GAGTC	2 cut(s)	100, 712
PpsI	GAGTC	2 cut(s)	100, 712
Ppu21I	YACGTR	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	607, 743, 790
PspGI	CCWGG	3 cut(s)	607, 743, 790
PspN4I	GGNNCC	5 cut(s)	174, 351, 689, 918, 1008
PspPI	GGNCC	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	172, 349
RsaI	GTAC	2 cut(s)	1072, 1309
RsaNI	GTAC	2 cut(s)	1071, 1308
RseI	CAYNNNNRTG	2 cut(s)	216, 722
SacII	CCGCGG	1 cut(s)	1017
SaqAI	TTAA	3 cut(s)	29, 401, 756
SatI	GCNGC	9 cut(s)	108, 255, 298, 456, 477, 826, 1027, 1193, 1196
Sau3AI	GATC	4 cut(s)	5, 142, 172, 349
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	2 cut(s)	101, 713
ScrFI	CCNGG	5 cut(s)	177, 609, 745, 792, 1161
SduI	GDGCHC	3 cut(s)	491, 498, 692
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	2 cut(s)	547, 1232
SfcI	CTRYAG	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	1017
SgrBI	CCGCGG	1 cut(s)	1017
SinI	GGWCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	2 cut(s)	216, 722
Sse9I	AATT	6 cut(s)	273, 354, 397, 440, 779, 1251
SseBI	AGGCCT	1 cut(s)	1235
SspI	AATATT	1 cut(s)	1095
SspMI	CTAG	5 cut(s)	365, 516, 527, 657, 813
StuI	AGGCCT	1 cut(s)	1235
StyD4I	CCNGG	5 cut(s)	175, 607, 743, 790, 1159
TaaI	ACNGT	3 cut(s)	269, 388, 630
TaiI	ACGT	3 cut(s)	510, 651, 1178
TaqI	TCGA	1 cut(s)	1238
TasI	AATT	6 cut(s)	273, 354, 397, 440, 779, 1251
TatI	WGTACW	2 cut(s)	1070, 1307
TauI	GCSGC	3 cut(s)	479, 1029, 1198
TfiI	GAWTC	2 cut(s)	180, 637
Tru1I	TTAA	3 cut(s)	29, 401, 756
Tru9I	TTAA	3 cut(s)	29, 401, 756
TscAI	CASTG	2 cut(s)	272, 466
TseI	GCWGC	6 cut(s)	107, 254, 297, 455, 825, 1192
TspGWI	ACGGA	3 cut(s)	116, 362, 1122
TspRI	CASTG	2 cut(s)	272, 466
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	1 cut(s)	397
XspI	CTAG	5 cut(s)	365, 516, 527, 657, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.