Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Forward (+)

8187359 .. 8189460

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGTAGTAGTTCCTCAACATCATCATCTTCTTCATCGCCTCATCGTTCTCGTGGTGGCAGTAACAATAGTACTAACAGTAACAACGAAGATAGGCCGCGATTCTTCGACCCAAAAGCGAAGAGCAAGTGCTGGGCAAACGCCGCAATAGTGCCAGGTCGACACCCTGAGCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATACTACCCTTCTCCAAAGGTGGTGAATCCGTAGCGGAGAATTGTCAGATTCTTCAAACAAGAGTGAACAGATTCAAATCAAACAAAGAGCAGGTCGACGAGAAAGAATTGAAAGGCTATTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCTGTCTATGGGGATGTGATCCGGCCAGGAAATCAGTGCCGATGCAGAACTGTAGCTGAGATGCTTGGCCAGGTCAAGTCAAAAGACAAAACTGCTGCTTGCAAGTTGCCGCATAGCAGTGAGGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

185

Amino Acids

20.46

Weight (kDa)

8.87

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	2 cut(s)	160, 351
AccII	CGCG	1 cut(s)	100
AciI	CCGC	6 cut(s)	98, 144, 172, 189, 290, 533
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	2 cut(s)	446, 490
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	73, 248
AfeI	AGCGCT	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	311, 331, 367, 419
AjnI	CCWGG	4 cut(s)	154, 225, 448, 492
AluBI	AGCT	2 cut(s)	406, 479
AluI	AGCT	2 cut(s)	406, 479
AlwI	GGATC	1 cut(s)	436
Aor51HI	AGCGCT	1 cut(s)	212
AoxI	GGCC	3 cut(s)	95, 446, 490
ApeKI	GCWGC	2 cut(s)	231, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	180, 213
AsuHPI	GGTGA	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	492
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	218, 505
BciT130I	CCWGG	4 cut(s)	156, 227, 450, 494
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	6 cut(s)	98, 144, 189, 232, 519, 533
BlsI	GCNGC	6 cut(s)	99, 145, 190, 233, 520, 534
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	4 cut(s)	156, 227, 450, 494
BmrFI	CCNGG	4 cut(s)	156, 227, 450, 494
BmsI	GCATC	2 cut(s)	455, 474
Bpu10I	CCTNAGC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	4 cut(s)	156, 227, 450, 494
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	159, 471
BseXI	GCAGC	2 cut(s)	218, 505
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	97, 448, 492
BsiSI	CCGG	2 cut(s)	192, 445
BsnI	GGCC	3 cut(s)	97, 448, 492
Bsp143I	GATC	2 cut(s)	250, 441
BspACI	CCGC	6 cut(s)	98, 144, 172, 189, 290, 533
BspANI	GGCC	3 cut(s)	97, 448, 492
BspCNI	CTCAG	2 cut(s)	160, 472
BspFNI	CGCG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	436
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	250, 441
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	4 cut(s)	156, 227, 450, 494
Bst4CI	ACNGT	2 cut(s)	80, 475
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	193, 523
BstDEI	CTNAG	2 cut(s)	168, 480
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	180, 213
BstKTI	GATC	2 cut(s)	253, 444
BstMBI	GATC	2 cut(s)	250, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 231, 237
BstNI	CCWGG	4 cut(s)	156, 227, 450, 494
BstSCI	CCNGG	4 cut(s)	154, 225, 448, 492
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	218, 505
BsuRI	GGCC	3 cut(s)	97, 448, 492
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	464, 547
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	193, 523
CfoI	GCGC	2 cut(s)	180, 213
Cfr10I	RCCGGY	1 cut(s)	191
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	72, 247
CviJI	RGCY	9 cut(s)	97, 231, 372, 406, 425, 448, 479, 492, 548
CviKI_1	RGCY	9 cut(s)	97, 231, 372, 406, 425, 448, 479, 492, 548
CviQI	GTAC	2 cut(s)	72, 247
DdeI	CTNAG	2 cut(s)	168, 480
DpnI	GATC	2 cut(s)	252, 443
DpnII	GATC	2 cut(s)	250, 441
EaeI	YGGCCR	2 cut(s)	446, 490
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco47III	AGCGCT	1 cut(s)	212
EcoRII	CCWGG	4 cut(s)	154, 225, 448, 492
FaiI	YATR	5 cut(s)	257, 413, 432, 537, 553
FblI	GTMKAC	2 cut(s)	160, 351
Fnu4HI	GCNGC	6 cut(s)	98, 144, 189, 232, 519, 533
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	6 cut(s)	98, 144, 189, 232, 519, 533
GlaI	GCGC	2 cut(s)	179, 212
GluI	GCNGC	6 cut(s)	98, 144, 189, 232, 519, 533
GsaI	CCCAGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	97, 448, 492
HapII	CCGG	2 cut(s)	192, 445
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	180, 213
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	178, 211
HinP1I	GCGC	2 cut(s)	178, 211
HincII	GTYRAC	2 cut(s)	161, 352
HindII	GTYRAC	2 cut(s)	161, 352
HinfI	GANTC	4 cut(s)	102, 281, 304, 327
HpaII	CCGG	2 cut(s)	192, 445
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	161, 322, 352, 393
Hpy188I	TCNGA	1 cut(s)	303
Hpy8I	GTNNAC	4 cut(s)	161, 322, 352, 393
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	80, 475
HpyCH4V	TGCA	3 cut(s)	219, 468, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 231, 237
HpyF3I	CTNAG	2 cut(s)	168, 480
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	178, 211
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	250, 441
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	218, 505
LweI	GCATC	2 cut(s)	455, 474
MaeIII	GTNAC	2 cut(s)	62, 80
MalI	GATC	2 cut(s)	252, 443
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	2 cut(s)	250, 441
MboII	GAAGA	6 cut(s)	21, 24, 97, 101, 133, 299
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	3 cut(s)	295, 362, 414
MluNI	TGGCCA	1 cut(s)	492
MnlI	CCTC	4 cut(s)	25, 51, 245, 538
Mox20I	TGGCCA	1 cut(s)	492
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	540
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	2 cut(s)	192, 445
MspR9I	CCNGG	4 cut(s)	156, 227, 450, 494
MvaI	CCWGG	4 cut(s)	156, 227, 450, 494
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	143, 231, 237
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	250, 441
NgoMIV	GCCGGC	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	4 cut(s)	102, 281, 304, 327
PkrI	GCNGC	6 cut(s)	99, 145, 190, 233, 520, 534
Psp6I	CCWGG	4 cut(s)	154, 225, 448, 492
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	4 cut(s)	154, 225, 448, 492
RsaI	GTAC	2 cut(s)	73, 248
RsaNI	GTAC	2 cut(s)	72, 247
RseI	CAYNNNNRTG	1 cut(s)	540
SalI	GTCGAC	2 cut(s)	159, 350
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	6 cut(s)	98, 144, 189, 232, 519, 533
Sau3AI	GATC	2 cut(s)	250, 441
ScaI	AGTACT	1 cut(s)	73
ScrFI	CCNGG	4 cut(s)	156, 227, 450, 494
SetI	ASST	6 cut(s)	160, 277, 351, 408, 481, 498
SfaNI	GCATC	2 cut(s)	455, 474
SfcI	CTRYAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	540
Sse9I	AATT	3 cut(s)	295, 362, 414
SsiI	CCGC	6 cut(s)	98, 144, 172, 189, 290, 533
StyD4I	CCNGG	4 cut(s)	154, 225, 448, 492
TaaI	ACNGT	2 cut(s)	80, 475
TaqI	TCGA	4 cut(s)	108, 160, 243, 351
TasI	AATT	3 cut(s)	295, 362, 414
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	4 cut(s)	100, 146, 191, 535
TfiI	GAWTC	4 cut(s)	102, 281, 304, 327
TscAI	CASTG	2 cut(s)	464, 547
TseI	GCWGC	2 cut(s)	231, 518
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	464, 547
XmiI	GTMKAC	2 cut(s)	160, 351
XmnI	GAANNNNTTC	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.