Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Reverse (-)

29322783 .. 29325336

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCTCTTCCACTTCCAGTTCAAGAAGAGAGAGAGGGGGGGGAGGGTGTGATGAGTTCTTCGCCGAAGAGCAAGGGTGACGAAAGACCACGGTTCTTCGATTCAAAAACGAAGAGCAAGTGCTGGGCAAACGCGGATGTGGTGCCGGGCCGACACCCTGAGCGGTGGCGGCAAGACGCCGCCGGCAACGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATCGTTCCATTCTCCAAAGGTGGTGAATCCACAGAAGAAAATTGTCAGATTCTTCAAACAAGGGTAAACAGATTCAAATCAGACAAAGACAAAATCGATACAGATAAATTGAAAGGTTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATCGAAATGGCCGTATATGGTGACGTGATCCGCCCAGGAAACCAATGCCGATGCAGAACTGTAGCCGAGATGCTTGGACAGCACAAGTCGAAAGACCAAACAGCTGCTTGCAAGTTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

176

Amino Acids

19.74

Weight (kDa)

7.97

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	163
AccII	CGCG	1 cut(s)	134
AciI	CCGC	5 cut(s)	134, 163, 169, 180, 436
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	239
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	23, 105, 302, 322, 358
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	216, 439
AluBI	AGCT	2 cut(s)	397, 509
AluI	AGCT	2 cut(s)	397, 509
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	2 cut(s)	148, 414
ApeKI	GCWGC	2 cut(s)	222, 509
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	89, 281, 437
BanI	GGYRCC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	209, 496
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	218, 441
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	4 cut(s)	170, 180, 223, 510
BlsI	GCNGC	4 cut(s)	171, 181, 224, 511
Bme1390I	CCNGG	3 cut(s)	147, 218, 441
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	147, 218, 441
BmsI	GCATC	2 cut(s)	446, 465
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	89, 217, 439
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	218, 441
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	89, 217, 439
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	209, 496
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	150, 416
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	146, 183
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	150, 416
Bsp143I	GATC	2 cut(s)	241, 432
BspACI	CCGC	5 cut(s)	134, 163, 169, 180, 436
BspANI	GGCC	2 cut(s)	150, 416
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	2 cut(s)	62, 107
BspT107I	GGYRCC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	89, 217, 439
BssMI	GATC	2 cut(s)	241, 432
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	218, 441
Bst4CI	ACNGT	2 cut(s)	93, 466
Bst6I	CTCTTC	4 cut(s)	12, 21, 62, 107
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	184, 514
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	244, 435
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	241, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 222, 228, 484
BstNI	CCWGG	2 cut(s)	218, 441
BstSCI	CCNGG	3 cut(s)	145, 216, 439
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	209, 496
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	150, 416
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	184, 514
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	6 cut(s)	150, 222, 397, 416, 470, 509
CviKI_1	RGCY	6 cut(s)	150, 222, 397, 416, 470, 509
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	243, 434
DpnII	GATC	2 cut(s)	241, 432
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	4 cut(s)	12, 21, 62, 107
EarI	CTCTTC	4 cut(s)	12, 21, 62, 107
EciI	GGCGGA	1 cut(s)	425
Eco47III	AGCGCT	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	216, 439
FaiI	YATR	4 cut(s)	404, 421, 423, 526
Fnu4HI	GCNGC	4 cut(s)	170, 180, 223, 510
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	170, 180, 223, 510
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	4 cut(s)	170, 180, 223, 510
GsaI	CCCAGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	150, 416
HapII	CCGG	2 cut(s)	146, 183
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	101, 272, 295, 318
HpaII	CCGG	2 cut(s)	146, 183
HphI	GGTGA	3 cut(s)	89, 281, 437
Hpy166II	GTNNAC	2 cut(s)	313, 384
Hpy188I	TCNGA	2 cut(s)	294, 328
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	313, 384
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	93, 466
HpyCH4IV	ACGT	2 cut(s)	189, 429
HpyCH4V	TGCA	3 cut(s)	210, 459, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 222, 228, 484
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	189, 429
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	241, 432
LguI	GCTCTTC	2 cut(s)	62, 107
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	9 cut(s)	30, 109, 159, 171, 196, 203, 230, 426, 453
Lsp1109I	GCAGC	2 cut(s)	209, 496
LweI	GCATC	2 cut(s)	446, 465
MaeII	ACGT	2 cut(s)	189, 429
MaeIII	GTNAC	3 cut(s)	77, 362, 425
MalI	GATC	2 cut(s)	243, 434
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	2 cut(s)	241, 432
MboII	GAAGA	7 cut(s)	38, 51, 79, 88, 124, 290, 293
MluCI	AATT	2 cut(s)	286, 353
MnlI	CCTC	3 cut(s)	28, 37, 236
MroNI	GCCGGC	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	146, 183
MspR9I	CCNGG	3 cut(s)	147, 218, 441
MvaI	CCWGG	2 cut(s)	218, 441
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	169, 222, 228, 484
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	241, 432
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	77, 425
PciSI	GCTCTTC	2 cut(s)	62, 107
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 414
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	4 cut(s)	101, 272, 295, 318
PkrI	GCNGC	4 cut(s)	171, 181, 224, 511
Psp6I	CCWGG	2 cut(s)	216, 439
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	216, 439
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SapI	GCTCTTC	2 cut(s)	62, 107
SatI	GCNGC	4 cut(s)	170, 180, 223, 510
Sau3AI	GATC	2 cut(s)	241, 432
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	147, 218, 441
SetI	ASST	6 cut(s)	192, 268, 364, 399, 432, 511
SfaNI	GCATC	2 cut(s)	446, 465
SfcI	CTRYAG	1 cut(s)	465
Sse9I	AATT	2 cut(s)	286, 353
SsiI	CCGC	5 cut(s)	134, 163, 169, 180, 436
StyD4I	CCNGG	3 cut(s)	145, 216, 439
TaaI	ACNGT	2 cut(s)	93, 466
TaiI	ACGT	2 cut(s)	192, 432
TaqI	TCGA	5 cut(s)	99, 234, 342, 408, 494
TasI	AATT	2 cut(s)	286, 353
TauI	GCSGC	2 cut(s)	172, 182
TfiI	GAWTC	4 cut(s)	101, 272, 295, 318
TseFI	GTSAC	2 cut(s)	77, 425
TseI	GCWGC	2 cut(s)	222, 509
Tsp45I	GTSAC	2 cut(s)	77, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.