Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Forward (+)

63770607 .. 63772453

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTAGTTCCTCATCGCCTCATCGCTCTCATGGTGGCAGTAACAATAGTAGCAGCAACGGCGAAGATAGGCCGCGATTCTTCGACCCAAAAGCAAAGAGCAAGTGCTGGGCAAACGCCGCAATAGTGCCAGGTCGACACCCTGAGCGGTGGCGCAAAGACGCCGCCGGCAACATTGATTTGCAGAAGCTTAGTGGTGAATCCGTAGCGGAAAACTGTCAGATTCTACAAACAAGAGTGAACAGATTCAAATCAAACAAAGAGCAGGTCGATGAGAATCAATTGAAAGGTTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGTGATGTGGTCCGGCCAGGAAACCAGTGCCGATGCAGAACTGTAGCCGAGATGCTTGGCCAGGTCAAGTCAAAAGACAAAACTGCCGCTTGCAAGTTGCCACATAGCAGTGAGGCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

8.93

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	136
AccII	CGCG	1 cut(s)	76
AciI	CCGC	6 cut(s)	74, 120, 148, 165, 209, 438
AcoI	YGGCCR	2 cut(s)	365, 409
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	250, 286, 338
AjnI	CCWGG	3 cut(s)	130, 367, 411
AluBI	AGCT	2 cut(s)	190, 325
AluI	AGCT	2 cut(s)	190, 325
AoxI	GGCC	3 cut(s)	71, 365, 409
ApeKI	GCWGC	1 cut(s)	54
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	209, 365
AvaII	GGWCC	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	132, 369, 413
BfmI	CTRYAG	2 cut(s)	393, 470
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	55, 74, 120, 165, 438
BlsI	GCNGC	5 cut(s)	56, 75, 121, 166, 439
Bme1390I	CCNGG	3 cut(s)	132, 369, 413
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	132, 369, 413
BmsI	GCATC	2 cut(s)	374, 393
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	250, 276
BsaHI	GRCGYC	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	2 cut(s)	250, 276
BseBI	CCWGG	3 cut(s)	132, 369, 413
BseJI	GATNNNNATC	2 cut(s)	250, 276
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	73, 367, 411
BsiSI	CCGG	2 cut(s)	168, 364
BsnI	GGCC	3 cut(s)	73, 367, 411
BspACI	CCGC	6 cut(s)	74, 120, 148, 165, 209, 438
BspANI	GGCC	3 cut(s)	73, 367, 411
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	132, 369, 413
Bst4CI	ACNGT	3 cut(s)	218, 353, 394
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	169, 442
BstDEI	CTNAG	2 cut(s)	144, 191
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 119
BstNI	CCWGG	3 cut(s)	132, 369, 413
BstSCI	CCNGG	3 cut(s)	130, 367, 411
BstSFI	CTRYAG	2 cut(s)	393, 470
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	73, 367, 411
BtgZI	GCGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	383, 466
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	169, 442
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	170
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	8 cut(s)	73, 190, 325, 344, 367, 398, 411, 467
CviKI_1	RGCY	8 cut(s)	73, 190, 325, 344, 367, 398, 411, 467
DdeI	CTNAG	2 cut(s)	144, 191
EaeI	YGGCCR	2 cut(s)	365, 409
Eco47I	GGWCC	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	130, 367, 411
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 332, 456, 472
FatI	CATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	55, 74, 120, 165, 438
Fsp4HI	GCNGC	5 cut(s)	55, 74, 120, 165, 438
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	5 cut(s)	55, 74, 120, 165, 438
GsaI	CCCAGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	73, 367, 411
HapII	CCGG	2 cut(s)	168, 364
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	78, 200, 223, 246, 277
HpaII	CCGG	2 cut(s)	168, 364
HphI	GGTGA	2 cut(s)	209, 365
Hpy166II	GTNNAC	4 cut(s)	137, 241, 312, 349
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	4 cut(s)	137, 241, 312, 349
HpyCH4III	ACNGT	3 cut(s)	218, 353, 394
HpyCH4V	TGCA	3 cut(s)	184, 387, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 119
HpyF3I	CTNAG	2 cut(s)	144, 191
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	154
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	2 cut(s)	374, 393
MaeIII	GTNAC	2 cut(s)	41, 290
MbiI	CCGCTC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	73, 77
MfeI	CAATTG	1 cut(s)	281
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	2 cut(s)	281, 333
MluNI	TGGCCA	1 cut(s)	411
MnlI	CCTC	3 cut(s)	22, 30, 457
Mox20I	TGGCCA	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	411
MspI	CCGG	2 cut(s)	168, 364
MspR9I	CCNGG	3 cut(s)	132, 369, 413
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	3 cut(s)	132, 369, 413
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	60, 119
NaeI	GCCGGC	1 cut(s)	169
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	424
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	5 cut(s)	78, 200, 223, 246, 277
PkrI	GCNGC	5 cut(s)	56, 75, 121, 166, 439
Psp6I	CCWGG	3 cut(s)	130, 367, 411
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	130, 367, 411
PspPI	GGNCC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	135
SatI	GCNGC	5 cut(s)	55, 74, 120, 165, 438
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	3 cut(s)	132, 369, 413
SetI	ASST	6 cut(s)	136, 192, 270, 292, 327, 417
SfaNI	GCATC	2 cut(s)	374, 393
SfcI	CTRYAG	2 cut(s)	393, 470
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	281, 333
SsiI	CCGC	6 cut(s)	74, 120, 148, 165, 209, 438
StyD4I	CCNGG	3 cut(s)	130, 367, 411
TaaI	ACNGT	3 cut(s)	218, 353, 394
TaqI	TCGA	3 cut(s)	84, 136, 270
TasI	AATT	2 cut(s)	281, 333
TauI	GCSGC	4 cut(s)	76, 122, 167, 440
TfiI	GAWTC	5 cut(s)	78, 200, 223, 246, 277
TscAI	CASTG	2 cut(s)	383, 466
TseI	GCWGC	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	383, 466
VpaK11BI	GGWCC	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.