Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Forward (+)

65340781 .. 65342317

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGGAGTTCCTCATCGCCTCGTCGCTCTCATGGTGGCAGTAACAATAGTAGCAGCAACGGCGAAGATAGGCCGCGATTCTTCGACCCAAAAGCAAAGAGCAAGTGCTGGGCAAACGCCGCAGTAGTGCCAGGTCGACACCCTGAGCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCTGCAAGCGCTTCTGCAATTGCCTGGGCTGCCTCTGCTTCGAGTACGATCACATACTCCCCTTTTCTAAAGGTGGTGAATCCGTAGCGGAAAACTGTCAGATTCTACAAACAAGAGTGAACAGATTCAAATCAAACAAAGAGCAGGTCGACGAGAATCAATTGAAAGGCTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGTGATGTGGTCCGGCCAGGAAACCAGTGCCGATGCAGAACTGTAGCCGAGATGCTTGGCCAGGTCAAGTCAAAAGACAAAACTTCTGCTTGCAAGTTGCCACATAGCAGTGAGGCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

8.99

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	136, 327
AccII	CGCG	1 cut(s)	76
AciI	CCGC	5 cut(s)	74, 120, 148, 165, 266
AcoI	YGGCCR	2 cut(s)	422, 466
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	307, 343, 395
AjnI	CCWGG	4 cut(s)	130, 201, 424, 468
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	3 cut(s)	71, 422, 466
ApeKI	GCWGC	2 cut(s)	54, 207
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	156, 189
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	266, 422
AvaII	GGWCC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	66, 194
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	4 cut(s)	132, 203, 426, 470
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	5 cut(s)	55, 74, 120, 165, 208
BlsI	GCNGC	5 cut(s)	56, 75, 121, 166, 209
Bme1390I	CCNGG	4 cut(s)	132, 203, 426, 470
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	4 cut(s)	132, 203, 426, 470
BmsI	GCATC	2 cut(s)	431, 450
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	4 cut(s)	132, 203, 426, 470
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	66, 194
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	73, 424, 468
BsiSI	CCGG	2 cut(s)	168, 421
BsnI	GGCC	3 cut(s)	73, 424, 468
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	5 cut(s)	74, 120, 148, 165, 266
BspANI	GGCC	3 cut(s)	73, 424, 468
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	4 cut(s)	132, 203, 426, 470
Bst4CI	ACNGT	3 cut(s)	275, 410, 451
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	169, 185, 499
BstDEI	CTNAG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	156, 189
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
BstNI	CCWGG	4 cut(s)	132, 203, 426, 470
BstSCI	CCNGG	4 cut(s)	130, 201, 424, 468
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	66, 194
BsuRI	GGCC	3 cut(s)	73, 424, 468
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	440, 523
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	169, 185, 499
CfoI	GCGC	2 cut(s)	156, 189
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	73, 207, 348, 382, 401, 424, 455, 468, 524
CviKI_1	RGCY	9 cut(s)	73, 207, 348, 382, 401, 424, 455, 468, 524
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	422, 466
Eco47I	GGWCC	1 cut(s)	418
Eco47III	AGCGCT	1 cut(s)	188
EcoRII	CCWGG	4 cut(s)	130, 201, 424, 468
FaeI	CATG	1 cut(s)	35
FaiI	YATR	5 cut(s)	33, 233, 389, 513, 529
FatI	CATG	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	136, 327
Fnu4HI	GCNGC	5 cut(s)	55, 74, 120, 165, 208
Fsp4HI	GCNGC	5 cut(s)	55, 74, 120, 165, 208
GlaI	GCGC	2 cut(s)	155, 188
GluI	GCNGC	5 cut(s)	55, 74, 120, 165, 208
GsaI	CCCAGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	73, 424, 468
HapII	CCGG	2 cut(s)	168, 421
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	156, 189
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	154, 187
HinP1I	GCGC	2 cut(s)	154, 187
HincII	GTYRAC	2 cut(s)	137, 328
HindII	GTYRAC	2 cut(s)	137, 328
HinfI	GANTC	5 cut(s)	78, 257, 280, 303, 334
HpaII	CCGG	2 cut(s)	168, 421
HphI	GGTGA	2 cut(s)	266, 422
Hpy166II	GTNNAC	5 cut(s)	137, 298, 328, 369, 406
Hpy188I	TCNGA	1 cut(s)	279
Hpy8I	GTNNAC	5 cut(s)	137, 298, 328, 369, 406
Hpy99I	CGWCG	2 cut(s)	27, 332
HpyCH4III	ACNGT	3 cut(s)	275, 410, 451
HpyCH4V	TGCA	4 cut(s)	183, 195, 444, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
HpyF3I	CTNAG	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	154, 187
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	66, 194
LweI	GCATC	2 cut(s)	431, 450
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	73, 77
MfeI	CAATTG	2 cut(s)	196, 338
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	3 cut(s)	196, 338, 390
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	4 cut(s)	22, 30, 221, 514
Mox20I	TGGCCA	1 cut(s)	468
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	2 cut(s)	168, 421
MspR9I	CCNGG	4 cut(s)	132, 203, 426, 470
MunI	CAATTG	2 cut(s)	196, 338
MvaI	CCWGG	4 cut(s)	132, 203, 426, 470
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	226
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	481
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	5 cut(s)	78, 257, 280, 303, 334
PkrI	GCNGC	5 cut(s)	56, 75, 121, 166, 209
Psp6I	CCWGG	4 cut(s)	130, 201, 424, 468
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	4 cut(s)	130, 201, 424, 468
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	516
SalI	GTCGAC	2 cut(s)	135, 326
SatI	GCNGC	5 cut(s)	55, 74, 120, 165, 208
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	4 cut(s)	132, 203, 426, 470
SetI	ASST	5 cut(s)	136, 253, 327, 384, 474
SfaNI	GCATC	2 cut(s)	431, 450
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	196, 338, 390
SsiI	CCGC	5 cut(s)	74, 120, 148, 165, 266
StyD4I	CCNGG	4 cut(s)	130, 201, 424, 468
TaaI	ACNGT	3 cut(s)	275, 410, 451
TaqI	TCGA	4 cut(s)	84, 136, 219, 327
TasI	AATT	3 cut(s)	196, 338, 390
TauI	GCSGC	3 cut(s)	76, 122, 167
TfiI	GAWTC	5 cut(s)	78, 257, 280, 303, 334
TscAI	CASTG	2 cut(s)	440, 523
TseI	GCWGC	2 cut(s)	54, 207
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	440, 523
VpaK11BI	GGWCC	1 cut(s)	418
XmiI	GTMKAC	2 cut(s)	136, 327
XmnI	GAANNNNTTC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.