Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Reverse (-)

3223982 .. 3225515

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGTAGTTCCTCATCGCCTCATCGCTCTCATGGTGGCAGTAACAATAACGGCGAAGATAGGCCGCGATTCTTCGACCCAAAAGCAAAGAGCAAGTGCTGGGCAAACGCCGCAATAGTGCCAGGTCGACACCCTGAGCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCTGCAAGCGCTTCTGCAATTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATACTCCCCTTTTCTAAAGGTGGTGAATCCGTAGCGGAAAACTGTCAGATTCTACAAACAAGAGTGAACAGATTCAAATCAAACAAAGAGCAGGTCGACGAGAATCAATTGAAAGGCTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGTGATGTGGTCCGGCCAGGAAACCAGTGCCGATGCAGAACTGTAGCCGAGATGCTTGGCCAGGTCAAGTCAAAAGACAAAACTGCCGCTTGCAAGTTGCCACATAGCAGTGAGGCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

8.76

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	2 cut(s)	127, 318
AccII	CGCG	1 cut(s)	67
AciI	CCGC	6 cut(s)	65, 111, 139, 156, 257, 486
AcoI	YGGCCR	2 cut(s)	413, 457
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	298, 334, 386
AjnI	CCWGG	4 cut(s)	121, 192, 415, 459
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	3 cut(s)	62, 413, 457
ApeKI	GCWGC	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	147, 180
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	257, 413
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	4 cut(s)	123, 194, 417, 461
BfmI	CTRYAG	2 cut(s)	441, 518
BfoI	RGCGCY	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	5 cut(s)	65, 111, 156, 199, 486
BlsI	GCNGC	5 cut(s)	66, 112, 157, 200, 487
Bme1390I	CCNGG	4 cut(s)	123, 194, 417, 461
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	4 cut(s)	123, 194, 417, 461
BmsI	GCATC	2 cut(s)	422, 441
Bpu10I	CCTNAGC	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	4 cut(s)	123, 194, 417, 461
BseDI	CCNNGG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	64, 415, 459
BsiSI	CCGG	2 cut(s)	159, 412
BsnI	GGCC	3 cut(s)	64, 415, 459
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	6 cut(s)	65, 111, 139, 156, 257, 486
BspANI	GGCC	3 cut(s)	64, 415, 459
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	4 cut(s)	123, 194, 417, 461
Bst4CI	ACNGT	3 cut(s)	266, 401, 442
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	160, 176, 490
BstDEI	CTNAG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	147, 180
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 198, 204
BstNI	CCWGG	4 cut(s)	123, 194, 417, 461
BstSCI	CCNGG	4 cut(s)	121, 192, 415, 459
BstSFI	CTRYAG	2 cut(s)	441, 518
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	64, 415, 459
BtgZI	GCGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	431, 514
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	160, 176, 490
CfoI	GCGC	2 cut(s)	147, 180
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	64, 198, 339, 373, 392, 415, 446, 459, 515
CviKI_1	RGCY	9 cut(s)	64, 198, 339, 373, 392, 415, 446, 459, 515
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	413, 457
Eco47I	GGWCC	1 cut(s)	409
Eco47III	AGCGCT	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	121, 192, 415, 459
FaeI	CATG	1 cut(s)	35
FaiI	YATR	5 cut(s)	33, 224, 380, 504, 520
FatI	CATG	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	127, 318
Fnu4HI	GCNGC	5 cut(s)	65, 111, 156, 199, 486
Fsp4HI	GCNGC	5 cut(s)	65, 111, 156, 199, 486
GlaI	GCGC	2 cut(s)	146, 179
GluI	GCNGC	5 cut(s)	65, 111, 156, 199, 486
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	64, 415, 459
HapII	CCGG	2 cut(s)	159, 412
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	147, 180
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	145, 178
HinP1I	GCGC	2 cut(s)	145, 178
HincII	GTYRAC	2 cut(s)	128, 319
HindII	GTYRAC	2 cut(s)	128, 319
HinfI	GANTC	5 cut(s)	69, 248, 271, 294, 325
HpaII	CCGG	2 cut(s)	159, 412
HphI	GGTGA	2 cut(s)	257, 413
Hpy166II	GTNNAC	5 cut(s)	128, 289, 319, 360, 397
Hpy188I	TCNGA	1 cut(s)	270
Hpy8I	GTNNAC	5 cut(s)	128, 289, 319, 360, 397
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	266, 401, 442
HpyCH4V	TGCA	4 cut(s)	174, 186, 435, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 198, 204
HpyF3I	CTNAG	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	145, 178
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	2 cut(s)	422, 441
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	219
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	64, 68
MfeI	CAATTG	2 cut(s)	187, 329
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	3 cut(s)	187, 329, 381
MluNI	TGGCCA	1 cut(s)	459
MnlI	CCTC	4 cut(s)	22, 30, 212, 505
Mox20I	TGGCCA	1 cut(s)	459
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	459
MspI	CCGG	2 cut(s)	159, 412
MspR9I	CCNGG	4 cut(s)	123, 194, 417, 461
MunI	CAATTG	2 cut(s)	187, 329
MvaI	CCWGG	4 cut(s)	123, 194, 417, 461
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	110, 198, 204
NaeI	GCCGGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	217
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	472
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	5 cut(s)	69, 248, 271, 294, 325
PkrI	GCNGC	5 cut(s)	66, 112, 157, 200, 487
Psp6I	CCWGG	4 cut(s)	121, 192, 415, 459
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	4 cut(s)	121, 192, 415, 459
PspPI	GGNCC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	507
SalI	GTCGAC	2 cut(s)	126, 317
SatI	GCNGC	5 cut(s)	65, 111, 156, 199, 486
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	409
ScrFI	CCNGG	4 cut(s)	123, 194, 417, 461
SetI	ASST	5 cut(s)	127, 244, 318, 375, 465
SfaNI	GCATC	2 cut(s)	422, 441
SfcI	CTRYAG	2 cut(s)	441, 518
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	3 cut(s)	187, 329, 381
SsiI	CCGC	6 cut(s)	65, 111, 139, 156, 257, 486
StyD4I	CCNGG	4 cut(s)	121, 192, 415, 459
TaaI	ACNGT	3 cut(s)	266, 401, 442
TaqI	TCGA	4 cut(s)	75, 127, 210, 318
TasI	AATT	3 cut(s)	187, 329, 381
TauI	GCSGC	4 cut(s)	67, 113, 158, 488
TfiI	GAWTC	5 cut(s)	69, 248, 271, 294, 325
TscAI	CASTG	2 cut(s)	431, 514
TseI	GCWGC	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	431, 514
VpaK11BI	GGWCC	1 cut(s)	409
XmiI	GTMKAC	2 cut(s)	127, 318
XmnI	GAANNNNTTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.