Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Reverse (-)

33212128 .. 33215121

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1198200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCAAAGATTTGGGATAAGAATATTTGTTTTGGTCATGGAGCTGGACATAATCGAGATGGCCGTGTATGGTGACGTGATCCGGCCAGGAAACCAATGCCGATGCAGAACTGTGGCCGAGATGCTTGGCCAGCACAAGTCGAAGGACCAAACAGCTGCTTGCAAGTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

58

Amino Acids

6.51

Weight (kDa)

8.61

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	4 cut(s)	60, 83, 114, 127
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	43, 155
AluI	AGCT	2 cut(s)	43, 155
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	4 cut(s)	60, 83, 114, 127
ApeKI	GCWGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	92, 111
BseBI	CCWGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	4 cut(s)	62, 85, 116, 129
BsiSI	CCGG	1 cut(s)	82
BsnI	GGCC	4 cut(s)	62, 85, 116, 129
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	62, 85, 116, 129
BspPI	GGATC	1 cut(s)	73
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	131, 160
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	62, 85, 116, 129
BtrI	CACGTC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	131, 160
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	6 cut(s)	43, 62, 85, 116, 129, 155
CviKI_1	RGCY	6 cut(s)	43, 62, 85, 116, 129, 155
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	4 cut(s)	60, 83, 114, 127
Eco47I	GGWCC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 50, 69
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	62, 85, 116, 129
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	1 cut(s)	40
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	4, 105, 162, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	29, 72, 95, 99, 143
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	92, 111
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	155
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	3 cut(s)	45, 78, 157
SfaNI	GCATC	2 cut(s)	92, 111
SinI	GGWCC	1 cut(s)	145
SspI	AATATT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	54, 140
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.