Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010466

Physical Location & Seq

Genomic Coordinates Reverse (-)

16041319 .. 16044208

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTTCTTCTTCACCTTCTTCTTCTTCGCCTCACCGTTCTCGTGGTGGTGGTGATAATGGTACCAGTAGCAAGGGCAAGGGTGAAGATAGACCACGCTTCTTCGATTCAAAAGCAAAGAGCAATTGCTGGGCAAAGGCTGATGTAGTGCCAGGTCGACACCCTGAGAGGTGGCGCAAAGACGCTGCTGGTAACGTTGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATAGTTCCCTTCTCCAAAGGTGGTGAATCCACAGAAGACAATTGTCAGATTCTTCAAACAAGAGTGAACAGATTCAAATCAGACAAAGACCAGATTGACAAGACTCAATTGAAAGGTTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCCGTGTACGGTGATGTGATTCGGCCAGGAAACCAGTGCCGATGCAGAACTGTAGCCGAGATGCTTGGCCAGTACAAGTCAAAAGACAAAACGGCTGCTTGCAAGTTACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

8.95

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18680
fragaria_vesca	FvH4_5g14460 FvH4_5g14460 FvH4_5g14460
malus_domestica	MD06G1198200.v1.1 MD14G1205900.v1.1
prunus_persica	Prupe.5G199100_v2.0.a1
pyrus_communis	pycom14g17030
rosa_chinensis	RchiOBHm_Chr7g0182201
rosa_laevigata	RLG00000005140
rosa_multiflora	Rmu_co8077708.1_g000001 Rmu_sc0000003.1_g000016 Rmu_sc0033556.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271430
rosa_rugosa	Rorug06G0446000 Rorug06G0446000
rosa_samantha	Rh7AG049100 Rh7BG049100 Rh7CG050400 Rh7DG048300
rosa_wichuraiana	Rw7G004010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	157
AclI	AACGTT	1 cut(s)	195
AcoI	YGGCCR	3 cut(s)	420, 443, 487
AfaI	GTAC	4 cut(s)	64, 245, 428, 494
AfeI	AGCGCT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	111, 308, 328, 364, 416
AjnI	CCWGG	3 cut(s)	151, 222, 445
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	3 cut(s)	420, 443, 487
ApeKI	GCWGC	3 cut(s)	185, 228, 515
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	177, 210
AsuHPI	GGTGA	6 cut(s)	6, 26, 65, 95, 287, 443
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	172, 215, 502
BceAI	ACGGC	2 cut(s)	407, 528
BciT130I	CCWGG	3 cut(s)	153, 224, 447
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	3 cut(s)	186, 229, 516
BlsI	GCNGC	3 cut(s)	187, 230, 517
Bme1390I	CCNGG	3 cut(s)	153, 224, 447
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	153, 224, 447
BmsI	GCATC	2 cut(s)	452, 471
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	66, 454, 490
Bse8I	GATNNNNATC	1 cut(s)	328
BseBI	CCWGG	3 cut(s)	153, 224, 447
BseDI	CCNNGG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	66, 454, 490
BseXI	GCAGC	3 cut(s)	172, 215, 502
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	3 cut(s)	422, 445, 489
BshNI	GGYRCC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	422, 445, 489
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	3 cut(s)	422, 445, 489
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	66, 454, 490
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	3 cut(s)	153, 224, 447
Bst4CI	ACNGT	4 cut(s)	38, 431, 472, 531
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	177, 210
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 234
BstNI	CCWGG	3 cut(s)	153, 224, 447
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	151, 222, 445
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	172, 215, 502
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	422, 445, 489
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	520
CfoI	GCGC	2 cut(s)	177, 210
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	63, 244, 427, 493
CviJI	RGCY	8 cut(s)	140, 228, 403, 422, 445, 476, 489, 515
CviKI_1	RGCY	8 cut(s)	140, 228, 403, 422, 445, 476, 489, 515
CviQI	GTAC	4 cut(s)	63, 244, 427, 493
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	3 cut(s)	420, 443, 487
Eco47III	AGCGCT	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	151, 222, 445
FaiI	YATR	2 cut(s)	254, 410
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	186, 229, 516
Fsp4HI	GCNGC	3 cut(s)	186, 229, 516
GlaI	GCGC	2 cut(s)	176, 209
GluI	GCNGC	3 cut(s)	186, 229, 516
GsaI	CCCAGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	422, 445, 489
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	177, 210
Hin6I	GCGC	2 cut(s)	175, 208
HinP1I	GCGC	2 cut(s)	175, 208
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	6 cut(s)	107, 278, 301, 324, 355, 439
HphI	GGTGA	6 cut(s)	6, 26, 65, 95, 287, 443
Hpy166II	GTNNAC	4 cut(s)	158, 319, 390, 427
Hpy188I	TCNGA	2 cut(s)	300, 334
Hpy8I	GTNNAC	4 cut(s)	158, 319, 390, 427
HpyAV	CCTTC	2 cut(s)	27, 271
HpyCH4III	ACNGT	4 cut(s)	38, 431, 472, 531
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	216, 465, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 234
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	195
HspAI	GCGC	2 cut(s)	175, 208
KpnI	GGTACC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	3 cut(s)	172, 215, 502
LweI	GCATC	2 cut(s)	452, 471
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	191, 368, 525
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	8 cut(s)	3, 12, 15, 18, 94, 98, 296, 299
MfeI	CAATTG	3 cut(s)	124, 292, 359
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	124, 292, 359, 411
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	42, 162, 242
Mox20I	TGGCCA	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	489
MspR9I	CCNGG	3 cut(s)	153, 224, 447
MunI	CAATTG	3 cut(s)	124, 292, 359
MvaI	CCWGG	3 cut(s)	153, 224, 447
MwoI	GCNNNNNNNGC	2 cut(s)	228, 234
NdeII	GATC	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	107, 278, 301, 324, 439
PkrI	GCNGC	3 cut(s)	187, 230, 517
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	151, 222, 445
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	3 cut(s)	151, 222, 445
PspN4I	GGNNCC	1 cut(s)	64
RsaI	GTAC	4 cut(s)	64, 245, 428, 494
RsaNI	GTAC	4 cut(s)	63, 244, 427, 493
SalI	GTCGAC	1 cut(s)	156
SatI	GCNGC	3 cut(s)	186, 229, 516
Sau3AI	GATC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	3 cut(s)	153, 224, 447
SetI	ASST	7 cut(s)	19, 157, 173, 198, 274, 370, 405
SfaNI	GCATC	2 cut(s)	452, 471
SfcI	CTRYAG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	124, 292, 359, 411
StyD4I	CCNGG	3 cut(s)	151, 222, 445
TaaI	ACNGT	4 cut(s)	38, 431, 472, 531
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	105, 157, 240
TasI	AATT	4 cut(s)	124, 292, 359, 411
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	5 cut(s)	107, 278, 301, 324, 439
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	3 cut(s)	185, 228, 515
TspRI	CASTG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.