Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008516

Physical Location & Seq

Genomic Coordinates Forward (+)

11760987 .. 11761835

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19942.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCATTCGCCTCCTCCATCACCACCACGGCGCCGCTTCTCCTCCCTCGCCAGGGGAGCGACCGCCGCGACTCCTCGTCGGACCTCGGCTCCCCGACAACGCGGCCGGCGACGCTCGCGATGCTCCTTGGCCGGGCCACAGGGCGTCGCAGCCCGTCCATGCTAGTGAGGGAGACGGTGACGCGTGAGCTAGGCGAGCGCCGCACCGACTGGGGGTACTCGAAGCCGGTGGTGGCGCTGGACATGATGTGGAACACGGTGTTCGTGGTGGTCTCGGTGGTGATGTGGTGGTCTCGGTGGAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

103

Amino Acids

11.49

Weight (kDa)

11.29

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68070 AT2G01735 AT2G01735
fragaria_vesca	FvH4_4g33530 FvH4_5g19942 FvH4_6g33182
malus_domestica	MD13G1020200.v1.1 MD16G1018400.v1.1
prunus_persica	Prupe.1G333500_v2.0.a1 Prupe.1G333500_v2.0.a1
pyrus_communis	pycom16g01680
rosa_chinensis	RchiOBHm_Chr4g0443041
rosa_laevigata	RLG00000005960
rosa_multiflora	Rmu_co8232139.1_g000001 Rmu_sc0008055.1_g000003 Rmu_sc0015292.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383670
rosa_rugosa	Rorug04G0344000
rosa_samantha	Rh4AG398200 Rh4BG409700 Rh4CG425200 Rh4DG404500
rosa_wichuraiana	Rw4G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccII	CGCG	4 cut(s)	69, 103, 119, 184
AciI	CCGC	5 cut(s)	35, 64, 67, 103, 202
AcoI	YGGCCR	2 cut(s)	104, 130
AcyI	GRCGYC	2 cut(s)	32, 145
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	52, 53, 133, 213
AflIII	ACRYGT	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	3 cut(s)	167, 277, 297
AoxI	GGCC	3 cut(s)	104, 130, 135
ApeKI	GCWGC	1 cut(s)	150
AspLEI	GCGC	3 cut(s)	34, 201, 238
AspS9I	GGNCC	2 cut(s)	82, 135
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	13, 190, 292
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	167, 277, 297
BfaI	CTAG	2 cut(s)	164, 191
BfoI	RGCGCY	3 cut(s)	35, 202, 239
BisI	GCNGC	5 cut(s)	35, 67, 104, 151, 202
BlsI	GCNGC	5 cut(s)	36, 68, 105, 152, 203
Bme1390I	CCNGG	2 cut(s)	53, 134
Bme18I	GGWCC	1 cut(s)	82
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	82, 135
BmiI	GGNNCC	2 cut(s)	33, 91
BmrFI	CCNGG	2 cut(s)	53, 134
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	111, 293
BmuI	ACTGGG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	32, 145
BsaI	GGTCTC	2 cut(s)	277, 297
BsaJI	CCNNGG	4 cut(s)	27, 52, 85, 127
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 53, 133, 213
Bse118I	RCCGGY	2 cut(s)	106, 226
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	27, 52, 85, 127
BseLI	CCNNNNNNNGG	4 cut(s)	52, 53, 133, 213
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	3 cut(s)	4, 32, 64
BseX3I	CGGCCG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	4 cut(s)	69, 103, 119, 184
Bsh1285I	CGRYCG	2 cut(s)	64, 107
BshFI	GGCC	3 cut(s)	106, 132, 137
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	2 cut(s)	64, 107
BsiSI	CCGG	3 cut(s)	107, 133, 227
BslI	CCNNNNNNNGG	4 cut(s)	52, 53, 133, 213
BsmAI	GTCTC	3 cut(s)	167, 277, 297
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	106, 132, 137
Bso31I	GGTCTC	2 cut(s)	277, 297
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	5 cut(s)	35, 64, 67, 103, 202
BspANI	GGCC	3 cut(s)	106, 132, 137
BspFNI	CGCG	4 cut(s)	69, 103, 119, 184
BspLI	GGNNCC	2 cut(s)	33, 91
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	2 cut(s)	277, 297
BsrFI	RCCGGY	2 cut(s)	106, 226
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	2 cut(s)	106, 226
BssECI	CCNNGG	4 cut(s)	27, 52, 85, 127
BssNI	GRCGYC	2 cut(s)	32, 145
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	178, 259
BstACI	GRCGYC	2 cut(s)	32, 145
BstC8I	GCNNGC	3 cut(s)	108, 117, 197
BstDSI	CCRYGG	1 cut(s)	27
BstFNI	CGCG	4 cut(s)	69, 103, 119, 184
BstH2I	RGCGCY	3 cut(s)	35, 202, 239
BstHHI	GCGC	3 cut(s)	34, 201, 238
BstMAI	GTCTC	3 cut(s)	167, 277, 297
BstMCI	CGRYCG	2 cut(s)	64, 107
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 66, 112, 116, 121, 196, 201
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 132
BstUI	CGCG	4 cut(s)	69, 103, 119, 184
BstV1I	GCAGC	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	106, 132, 137
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	134
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	3 cut(s)	108, 117, 197
CfoI	GCGC	3 cut(s)	34, 201, 238
Cfr10I	RCCGGY	2 cut(s)	106, 226
Cfr13I	GGNCC	2 cut(s)	82, 135
CseI	GACGC	3 cut(s)	121, 134, 190
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	160, 244
CviJI	RGCY	7 cut(s)	90, 106, 132, 137, 153, 190, 226
CviKI_1	RGCY	7 cut(s)	90, 106, 132, 137, 153, 190, 226
CviQI	GTAC	1 cut(s)	217
DinI	GGCGCC	1 cut(s)	33
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	104, 130
EagI	CGGCCG	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EclXI	CGGCCG	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	127
Eco31I	GGTCTC	2 cut(s)	277, 297
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	2 cut(s)	163, 247
FaiI	YATR	2 cut(s)	161, 245
FatI	CATG	2 cut(s)	159, 243
Fnu4HI	GCNGC	5 cut(s)	35, 67, 104, 151, 202
Fsp4HI	GCNGC	5 cut(s)	35, 67, 104, 151, 202
FspBI	CTAG	2 cut(s)	164, 191
GlaI	GCGC	3 cut(s)	33, 200, 237
GluI	GCNGC	5 cut(s)	35, 67, 104, 151, 202
HaeII	RGCGCY	3 cut(s)	35, 202, 239
HaeIII	GGCC	3 cut(s)	106, 132, 137
HapII	CCGG	3 cut(s)	107, 133, 227
HgaI	GACGC	3 cut(s)	121, 134, 190
HhaI	GCGC	3 cut(s)	34, 201, 238
Hin1I	GRCGYC	2 cut(s)	32, 145
Hin1II	CATG	2 cut(s)	163, 247
Hin6I	GCGC	3 cut(s)	32, 199, 236
HinP1I	GCGC	3 cut(s)	32, 199, 236
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	3 cut(s)	107, 133, 227
HphI	GGTGA	3 cut(s)	13, 190, 292
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	82, 115, 150
HpyCH4III	ACNGT	2 cut(s)	178, 259
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 66, 112, 116, 121, 196, 201
Hsp92I	GRCGYC	2 cut(s)	32, 145
Hsp92II	CATG	2 cut(s)	163, 247
HspAI	GCGC	3 cut(s)	32, 199, 236
KasI	GGCGCC	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	57, 95, 129
LpnPI	CCDG	8 cut(s)	38, 65, 120, 126, 146, 196, 224, 240
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	111, 293
MaeI	CTAG	2 cut(s)	164, 191
MaeIII	GTNAC	1 cut(s)	178
MluI	ACGCGT	1 cut(s)	182
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	7 cut(s)	22, 25, 53, 57, 85, 95, 162
MroNI	GCCGGC	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	3 cut(s)	107, 133, 227
MspR9I	CCNGG	2 cut(s)	53, 134
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	4 cut(s)	69, 103, 119, 184
MwoI	GCNNNNNNNGC	7 cut(s)	57, 66, 112, 116, 121, 196, 201
NaeI	GCCGGC	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	134
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	163, 247
NlaIV	GGNNCC	2 cut(s)	33, 91
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	178
NruI	TCGCGA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	36, 68, 105, 152, 203
PleI	GAGTC	1 cut(s)	65
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	33, 91
PspPI	GGNCC	2 cut(s)	82, 135
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	5 cut(s)	35, 67, 104, 151, 202
Sau96I	GGNCC	2 cut(s)	82, 135
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	53, 134
SetI	ASST	2 cut(s)	87, 192
SfaNI	GCATC	2 cut(s)	111, 293
SfoI	GGCGCC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	164
SsiI	CCGC	5 cut(s)	35, 64, 67, 103, 202
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	164, 191
StyD4I	CCNGG	2 cut(s)	51, 132
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	178, 259
TaqI	TCGA	1 cut(s)	221
TauI	GCSGC	4 cut(s)	37, 69, 106, 204
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	2 cut(s)	164, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.