Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008516

Physical Location & Seq

Genomic Coordinates Reverse (-)

26267628 .. 26267901

Gene Structure 274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33182.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTCATTCGCCTCCTCCGCCACCACCACGATGCCGCTTCTCCTCCCTTGCCAGGGGAGTGACGGCCGAGACTCCTCGTCAGACCTCGGCTCCTCGACGACACGGCCGGCGATGCTCATGATGCTCCTCGGCCGGGCCACAGGGCGCCGCGGTCCGTCCATGTTGGTGAGGGAGACGGCGACGGGTGAGCTAGGCGAGCGCTGCGCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

71

Amino Acids

7.3

Weight (kDa)

6.13

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68070 AT2G01735 AT2G01735
fragaria_vesca	FvH4_4g33530 FvH4_5g19942 FvH4_6g33182
malus_domestica	MD13G1020200.v1.1 MD16G1018400.v1.1
prunus_persica	Prupe.1G333500_v2.0.a1 Prupe.1G333500_v2.0.a1
pyrus_communis	pycom16g01680
rosa_chinensis	RchiOBHm_Chr4g0443041
rosa_laevigata	RLG00000005960
rosa_multiflora	Rmu_co8232139.1_g000001 Rmu_sc0008055.1_g000003 Rmu_sc0015292.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383670
rosa_rugosa	Rorug04G0344000
rosa_samantha	Rh4AG398200 Rh4BG409700 Rh4CG425200 Rh4DG404500
rosa_wichuraiana	Rw4G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccII	CGCG	1 cut(s)	150
AciI	CCGC	4 cut(s)	18, 35, 148, 150
AcoI	YGGCCR	3 cut(s)	64, 104, 130
AcyI	GRCGYC	1 cut(s)	145
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	52, 53, 133
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	2 cut(s)	63, 167
Aor51HI	AGCGCT	1 cut(s)	200
AoxI	GGCC	4 cut(s)	64, 104, 130, 135
ApeKI	GCWGC	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	147, 201, 206
AspS9I	GGNCC	2 cut(s)	135, 152
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	178, 197
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	188
BceAI	ACGGC	3 cut(s)	79, 119, 192
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	63, 167
BfaI	CTAG	2 cut(s)	191, 211
BfoI	RGCGCY	2 cut(s)	148, 202
BisI	GCNGC	3 cut(s)	35, 148, 202
BlsI	GCNGC	3 cut(s)	36, 149, 203
Bme1390I	CCNGG	2 cut(s)	53, 134
Bme18I	GGWCC	1 cut(s)	152
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	135, 152
BmiI	GGNNCC	2 cut(s)	91, 146
BmrFI	CCNGG	2 cut(s)	53, 134
BmsI	GCATC	3 cut(s)	21, 102, 111
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	4 cut(s)	52, 85, 127, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 53, 133
Bse118I	RCCGGY	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	52, 85, 127, 148
BseLI	CCNNNNNNNGG	3 cut(s)	52, 53, 133
BseRI	GAGGAG	5 cut(s)	4, 32, 64, 82, 116
BseX3I	CGGCCG	3 cut(s)	64, 104, 130
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	3 cut(s)	67, 107, 133
BshFI	GGCC	4 cut(s)	66, 106, 132, 137
BshNI	GGYRCC	1 cut(s)	144
BsiEI	CGRYCG	3 cut(s)	67, 107, 133
BsiSI	CCGG	2 cut(s)	107, 133
BslI	CCNNNNNNNGG	3 cut(s)	52, 53, 133
BsmAI	GTCTC	2 cut(s)	63, 167
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	4 cut(s)	66, 106, 132, 137
BspACI	CCGC	4 cut(s)	18, 35, 148, 150
BspANI	GGCC	4 cut(s)	66, 106, 132, 137
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	91, 146
BspT107I	GGYRCC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	52, 85, 127, 148
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	108, 197
BstDSI	CCRYGG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	148, 202
BstHHI	GCGC	3 cut(s)	147, 201, 206
BstMAI	GTCTC	2 cut(s)	63, 167
BstMCI	CGRYCG	3 cut(s)	67, 107, 133
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 112, 121, 196, 201
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 132
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	188
BstZI	CGGCCG	3 cut(s)	64, 104, 130
BsuRI	GGCC	4 cut(s)	66, 106, 132, 137
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	108, 197
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	3 cut(s)	147, 201, 206
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	135, 152
Cfr42I	CCGCGG	1 cut(s)	151
CpoI	CGGWCCG	1 cut(s)	152
CspI	CGGWCCG	1 cut(s)	152
CviAII	CATG	2 cut(s)	118, 160
CviJI	RGCY	6 cut(s)	66, 90, 106, 132, 137, 190
CviKI_1	RGCY	6 cut(s)	66, 90, 106, 132, 137, 190
DinI	GGCGCC	1 cut(s)	146
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	3 cut(s)	64, 104, 130
EagI	CGGCCG	3 cut(s)	64, 104, 130
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	7
EclXI	CGGCCG	3 cut(s)	64, 104, 130
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	200
Eco52I	CGGCCG	3 cut(s)	64, 104, 130
EcoRII	CCWGG	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	2 cut(s)	121, 163
FaiI	YATR	2 cut(s)	119, 161
FatI	CATG	2 cut(s)	117, 159
Fnu4HI	GCNGC	3 cut(s)	35, 148, 202
Fsp4HI	GCNGC	3 cut(s)	35, 148, 202
FspBI	CTAG	2 cut(s)	191, 211
GlaI	GCGC	3 cut(s)	146, 200, 205
GluI	GCNGC	3 cut(s)	35, 148, 202
HaeII	RGCGCY	2 cut(s)	148, 202
HaeIII	GGCC	4 cut(s)	66, 106, 132, 137
HapII	CCGG	2 cut(s)	107, 133
HhaI	GCGC	3 cut(s)	147, 201, 206
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	121, 163
Hin6I	GCGC	3 cut(s)	145, 199, 204
HinP1I	GCGC	3 cut(s)	145, 199, 204
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	107, 133
HphI	GGTGA	2 cut(s)	178, 197
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	100, 184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 112, 121, 196, 201
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	121, 163
HspAI	GCGC	3 cut(s)	145, 199, 204
KasI	GGCGCC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
KspI	CCGCGG	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	95, 129
LpnPI	CCDG	5 cut(s)	38, 65, 120, 126, 146
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	3 cut(s)	21, 102, 111
MaeI	CTAG	2 cut(s)	191, 211
MaeIII	GTNAC	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	22, 25, 53, 85, 95, 103, 137, 162
MroNI	GCCGGC	1 cut(s)	106
MslI	CAYNNNNRTG	2 cut(s)	29, 164
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	2 cut(s)	107, 133
MspR9I	CCNGG	2 cut(s)	53, 134
MteI	GCGCNGCGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	17, 112, 121, 196, 201
NaeI	GCCGGC	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	134
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	121, 163
NlaIV	GGNNCC	2 cut(s)	91, 146
NmeAIII	GCCGAG	3 cut(s)	66, 92, 108
NmuCI	GTSAC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	36, 149, 203
PleI	GAGTC	1 cut(s)	65
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	91, 146
PspPI	GGNCC	2 cut(s)	135, 152
RseI	CAYNNNNRTG	2 cut(s)	29, 164
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	151
SatI	GCNGC	3 cut(s)	35, 148, 202
Sau96I	GGNCC	2 cut(s)	135, 152
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	53, 134
SetI	ASST	2 cut(s)	87, 192
SfaNI	GCATC	3 cut(s)	21, 102, 111
SfoI	GGCGCC	1 cut(s)	146
Sfr303I	CCGCGG	1 cut(s)	151
SgrBI	CCGCGG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	29, 164
SsiI	CCGC	4 cut(s)	18, 35, 148, 150
SspDI	GGCGCC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	191, 211
StyD4I	CCNGG	2 cut(s)	51, 132
TaqI	TCGA	1 cut(s)	95
TauI	GCSGC	2 cut(s)	37, 150
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	152
XspI	CTAG	2 cut(s)	191, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.