Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015292.1

Orthogroup ID

OG0008516

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1371

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015292.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

tgcaaaatgctccgcgtttgtactggttgtctgtggttttcctggcatttgacgtcttctttgccatcttttgtgttgttctggcatgtttgatcggaattgctctttgttgctgtttgccatgcatcattgcaattctatatgctgtggcaggacaggaaggtgcatccgaagcagatctcagtgttcttccaaaatacagatttagaatatcaggcgatgaaaaatctagtgtaggagcagggaaaatgattccaatggaatcaaccagtgggtacctggcagtcgagcgtattcttttacccgaggatgcggaatgttgtatatgtctcagccaatatgaggatggggcagatcttcacactcttccctgtaaccatcacttccatgctaattgcattgtgaaatggcttaaaatgaatgcaacatgtcctctctgcaaatacaatattctcaagggaagcgaacaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

157

Amino Acids

17.24

Weight (kDa)

5.49

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68070 AT2G01735 AT2G01735
fragaria_vesca	FvH4_4g33530 FvH4_5g19942 FvH4_6g33182
malus_domestica	MD13G1020200.v1.1 MD16G1018400.v1.1
prunus_persica	Prupe.1G333500_v2.0.a1 Prupe.1G333500_v2.0.a1
pyrus_communis	pycom16g01680
rosa_chinensis	RchiOBHm_Chr4g0443041
rosa_laevigata	RLG00000005960
rosa_multiflora	Rmu_co8232139.1_g000001 Rmu_sc0008055.1_g000003 Rmu_sc0015292.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383670
rosa_rugosa	Rorug04G0344000
rosa_samantha	Rh4AG398200 Rh4BG409700 Rh4CG425200 Rh4DG404500
rosa_wichuraiana	Rw4G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	13, 313
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	22, 277
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	41, 278
Alw26I	GTCTC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	304
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
Asp718I	GGTACC	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	3 cut(s)	73, 340, 386
BciT130I	CCWGG	2 cut(s)	43, 280
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	230
BglII	AGATCT	2 cut(s)	177, 354
Bme1390I	CCNGG	2 cut(s)	43, 280
BmeT110I	CYCGRG	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	43, 280
BmsI	GCATC	3 cut(s)	134, 175, 300
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	28, 269
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	43, 280
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	3 cut(s)	166, 315, 351
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	195, 345
BseNI	ACTGG	2 cut(s)	28, 269
Bsh1236I	CGCG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	92, 177, 354
BspACI	CCGC	2 cut(s)	13, 313
BspCNI	CTCAG	2 cut(s)	194, 344
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	28, 269
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	92, 177, 354
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	43, 280
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	181, 331
BstF5I	GGATG	3 cut(s)	166, 315, 351
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	95, 180, 357
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	92, 177, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	43, 280
BstNSI	RCATGY	2 cut(s)	89, 431
BstSCI	CCNGG	2 cut(s)	41, 278
BstUI	CGCG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	177, 354
BstYI	RGATCY	2 cut(s)	177, 354
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	166, 315, 351
BtsIMutI	CAGTG	2 cut(s)	189, 276
Csp6I	GTAC	2 cut(s)	21, 276
CviAII	CATG	4 cut(s)	86, 122, 388, 428
CviJI	RGCY	2 cut(s)	335, 411
CviKI_1	RGCY	2 cut(s)	335, 411
CviQI	GTAC	2 cut(s)	21, 276
DdeI	CTNAG	2 cut(s)	181, 331
DpnI	GATC	3 cut(s)	94, 179, 356
DpnII	GATC	3 cut(s)	92, 177, 354
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	41, 278
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	4 cut(s)	89, 125, 391, 431
FaiI	YATR	9 cut(s)	87, 123, 141, 143, 325, 327, 341, 389, 429
FatI	CATG	4 cut(s)	85, 121, 387, 427
FokI	GGATG	3 cut(s)	153, 322, 358
FspBI	CTAG	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	89, 125, 391, 431
HinfI	GANTC	2 cut(s)	252, 262
Hpy188I	TCNGA	2 cut(s)	97, 171
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	7 cut(s)	3, 125, 133, 166, 398, 424, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	181, 331
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	89, 125, 391, 431
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	92, 177, 354
LmnI	GCTCC	2 cut(s)	15, 238
LweI	GCATC	3 cut(s)	134, 175, 300
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	94, 179, 356
MboI	GATC	3 cut(s)	92, 177, 354
MboII	GAAGA	4 cut(s)	48, 181, 349, 358
MflI	RGATCY	2 cut(s)	177, 354
MluCI	AATT	3 cut(s)	98, 134, 393
MnlI	CCTC	3 cut(s)	300, 336, 443
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	2 cut(s)	413, 474
MslI	CAYNNNNRTG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	43, 280
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	43, 280
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	92, 177, 354
NlaIII	CATG	4 cut(s)	89, 125, 391, 431
NlaIV	GGNNCC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	2 cut(s)	89, 431
PciI	ACATGT	1 cut(s)	427
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	252, 262
PscI	ACATGT	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	41, 278
PspGI	CCWGG	2 cut(s)	41, 278
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	177, 354
RsaI	GTAC	2 cut(s)	22, 277
RsaNI	GTAC	2 cut(s)	21, 276
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	413, 474
Sau3AI	GATC	3 cut(s)	92, 177, 354
ScrFI	CCNGG	2 cut(s)	43, 280
SetI	ASST	4 cut(s)	56, 165, 281, 473
SfaNI	GCATC	3 cut(s)	134, 175, 300
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	3 cut(s)	98, 134, 393
SsiI	CCGC	2 cut(s)	13, 313
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	41, 278
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	98, 134, 393
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	252, 262
Tru1I	TTAA	2 cut(s)	413, 474
Tru9I	TTAA	2 cut(s)	413, 474
TscAI	CASTG	2 cut(s)	189, 276
TspDTI	ATGAA	2 cut(s)	236, 433
TspRI	CASTG	2 cut(s)	189, 276
XceI	RCATGY	2 cut(s)	89, 431
XcmI	CCANNNNNNNNNTGG	2 cut(s)	276, 343
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.