Prupe.1G333500_v2.0.a1

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
31563815 .. 31567896
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G333500.2

Sequence Viewer

Length: 1125 bp
ATGTCCTCGGAATCTTCGGCTACGACGGCGGCAGCGGCTGAGTCCCATGCGCCGCTCCTCCTTCCCCGCCAGGCGAGCAGCGGCCGCGACTCCTCCGACCTCGGCTCCCCGACCGCCCGACCCGCCACGCTGGCGATGCTGCTGGGGCGGGCCACCGGTCGCCGTGGCCCCTCGATGCTGGTGCGGGAGACGGCGGCCCGGGAACTGGACGAGCGGCGCGCCGACTGGGGCTACTCCAAGCCGGTGGTGGCTCTGGACATGATGTGGAACACGGCGTTCGTGGTGGTGTCGGTGGCGATGCTGATATGGACAGACCATGAGCACCCAAACACGCCGATCCGGCTGTGGATCTGTGGATATGCGCTGCAGTGTTTCGTCCATGTGGTGTTGGTGTGGGTTGAGTACCAGAGAAGGAATAATATTGCTCGGAGGATCAGTAGAAGAAACCAGGACGCCCAGCAGAACCAGCACCAGGTCGAAATCGATGCAAATGATACCGACGATGAAGAAGCAGCAGCAGCAGCTAGGGATTTGGCGATTTCCACGCGCTCCAGTCTCTCTAAACGATGCGAAACAGTGAACACAATGGCATCGTTTCTCTGGTGGATAGTTGGCTTTTATTGGGTAGTCGCTGGCGGTGAAGTTCTTCTGCAAAATGCTCCACGTTTGTACTGGTTGGCTGTGGTTTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTCTGGCATGTTTGATTGGAGTTGCTCTTTGTTGCTGTTTGCCATGCATCATTGCAATTCTTTATGCGGTTGCTGGACAGGAAGGTGCATCTGACGCAGATCTCAGTATTCTTCCAAAATACAGATTTCGATCGAGCAGTGAAGAAAAATCTAGTGTTGGAGCAGGGAAAATGATTCCAGTAGAAACAAGCAGTGGGTACTTAGCAATTGAGCGTATACTTTTACCTGAGGACGCGGAATGTTGTATATGTCTCAGCCCCTATGAGGATGGTACAGAGCTTCACACTCTTCCCTGTAATCATCATTTCCACGCTACTTGCATTGTAAAATGGCTTAAAATGAATGCAACATGTCCTCTCTGCAAGTACAACATTCTCAAGGGAAATGAACCGGTTTGA

Protein Analysis

375

Amino Acids

41.32

Weight (kDa)

5.88

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 55, 214
AccI GTMKAC 1 cut(s) 943
AccII CGCG 4 cut(s) 87, 219, 547, 962
AclWI GGATC 3 cut(s) 331, 356, 440
AcoI YGGCCR 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 5 cut(s) 404, 671, 926, 1000, 1094
AfiI CCNNNNNNNGG 3 cut(s) 205, 472, 991
AflIII ACRYGT 1 cut(s) 1076
AgeI ACCGGT 2 cut(s) 155, 1117
AjnI CCWGG 3 cut(s) 69, 447, 471
AluBI AGCT 2 cut(s) 524, 1006
AluI AGCT 2 cut(s) 524, 1006
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 3 cut(s) 182, 560, 983
AlwI GGATC 3 cut(s) 331, 356, 440
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 4 cut(s) 82, 150, 166, 195
ApeKI GCWGC 8 cut(s) 32, 78, 139, 364, 512, 515, 518, 521
AscI GGCGCGCC 1 cut(s) 217
AsiGI ACCGGT 2 cut(s) 155, 1117
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 5 cut(s) 52, 219, 221, 364, 549
AspS9I GGNCC 3 cut(s) 150, 167, 196
AsuC2I CCSGG 2 cut(s) 199, 200
AsuHPI GGTGA 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 8 cut(s) 44, 90, 126, 351, 524, 527, 530, 533
BccI CCATC 2 cut(s) 722, 989
BceAI ACGGC 4 cut(s) 42, 147, 207, 288
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 467, 501
BciT130I CCWGG 3 cut(s) 71, 449, 473
BcnI CCSGG 2 cut(s) 199, 200
BcoDI GTCTC 3 cut(s) 182, 560, 983
BfaI CTAG 2 cut(s) 525, 879
BfmI CTRYAG 1 cut(s) 365
BglI GCCNNNNNGGC 2 cut(s) 131, 340
BglII AGATCT 1 cut(s) 826
Bme1390I CCNGG 5 cut(s) 71, 199, 200, 449, 473
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 3 cut(s) 150, 167, 196
BmiI GGNNCC 2 cut(s) 106, 169
BmrFI CCNGG 5 cut(s) 71, 199, 200, 449, 473
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 8 cut(s) 126, 165, 288, 475, 557, 599, 783, 824
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 697
BpmI CTGGAG 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 1088
BpuMI CCSGG 2 cut(s) 199, 200
Bsa29I ATCGAT 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 856
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 4 cut(s) 6, 100, 163, 198
BsaWI WCCGGW 2 cut(s) 155, 1117
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 421, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 472, 991
Bse118I RCCGGY 3 cut(s) 155, 241, 1117
Bse1I ACTGG 5 cut(s) 210, 230, 552, 677, 905
Bse21I CCTNAGG 1 cut(s) 954
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 856
BseBI CCWGG 3 cut(s) 71, 449, 473
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 6, 100, 163, 198
BseGI GGATG 1 cut(s) 1000
BseJI GATNNNNATC 1 cut(s) 856
BseLI CCNNNNNNNGG 3 cut(s) 205, 472, 991
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 4 cut(s) 30, 844, 945, 994
BseNI ACTGG 5 cut(s) 210, 230, 552, 677, 905
BsePI GCGCGC 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 47, 82
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 8 cut(s) 44, 90, 126, 351, 524, 527, 530, 533
BseYI CCCAGC 2 cut(s) 142, 456
Bsh1236I CGCG 4 cut(s) 87, 219, 547, 962
Bsh1285I CGRYCG 4 cut(s) 85, 114, 160, 860
BshFI GGCC 4 cut(s) 84, 152, 168, 197
BshTI ACCGGT 2 cut(s) 155, 1117
BshVI ATCGAT 1 cut(s) 483
BsiEI CGRYCG 4 cut(s) 85, 114, 160, 860
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 5 cut(s) 156, 199, 242, 340, 1118
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 205, 472, 991
BsmAI GTCTC 3 cut(s) 182, 560, 983
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 4 cut(s) 84, 152, 168, 197
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 5 cut(s) 336, 348, 432, 826, 857
BspANI GGCC 4 cut(s) 84, 152, 168, 197
BspCNI CTCAG 4 cut(s) 31, 843, 946, 993
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 4 cut(s) 87, 219, 547, 962
BspLI GGNNCC 2 cut(s) 106, 169
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 3 cut(s) 331, 356, 440
BsrBI CCGCTC 2 cut(s) 55, 214
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 3 cut(s) 155, 241, 1117
BsrI ACTGG 5 cut(s) 210, 230, 552, 677, 905
BssAI RCCGGY 3 cut(s) 155, 241, 1117
BssECI CCNNGG 4 cut(s) 6, 100, 163, 198
BssHII GCGCGC 1 cut(s) 217
BssMI GATC 5 cut(s) 336, 348, 432, 826, 857
BssNAI GTATAC 1 cut(s) 944
BssNI GRCGYC 1 cut(s) 453
Bst1107I GTATAC 1 cut(s) 944
Bst2UI CCWGG 3 cut(s) 71, 449, 473
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 1 cut(s) 1020
BstACI GRCGYC 1 cut(s) 453
BstC8I GCNNGC 5 cut(s) 76, 132, 150, 219, 634
BstDEI CTNAG 5 cut(s) 39, 830, 928, 954, 980
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 1000
BstFNI CGCG 4 cut(s) 87, 219, 547, 962
BstHHI GCGC 5 cut(s) 52, 219, 221, 364, 549
BstKTI GATC 5 cut(s) 339, 351, 435, 829, 860
BstMAI GTCTC 3 cut(s) 182, 560, 983
BstMBI GATC 5 cut(s) 336, 348, 432, 826, 857
BstMCI CGRYCG 4 cut(s) 85, 114, 160, 860
BstNI CCWGG 3 cut(s) 71, 449, 473
BstNSI RCATGY 2 cut(s) 738, 1080
BstSCI CCNGG 5 cut(s) 69, 197, 198, 447, 471
BstSFI CTRYAG 1 cut(s) 365
BstUI CGCG 4 cut(s) 87, 219, 547, 962
BstV1I GCAGC 8 cut(s) 44, 90, 126, 351, 524, 527, 530, 533
BstV2I GAAGAC 1 cut(s) 697
BstX2I RGATCY 2 cut(s) 348, 826
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 2 cut(s) 348, 826
BstZ17I GTATAC 1 cut(s) 944
BstZI CGGCCG 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 483
Bsu36I CCTNAGG 1 cut(s) 954
BsuRI GGCC 4 cut(s) 84, 152, 168, 197
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 2 cut(s) 149, 311
BtsCI GGATG 1 cut(s) 1000
BtsI GCAGTG 3 cut(s) 374, 871, 925
BtsIMutI CAGTG 4 cut(s) 374, 582, 871, 925
Cac8I GCNNGC 5 cut(s) 76, 132, 150, 219, 634
CaiI CAGNNNCTG 1 cut(s) 38
CciNI GCGGCCGC 1 cut(s) 82
CfoI GCGC 5 cut(s) 52, 219, 221, 364, 549
Cfr10I RCCGGY 3 cut(s) 155, 241, 1117
Cfr13I GGNCC 3 cut(s) 150, 167, 196
Cfr9I CCCGGG 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 3 cut(s) 461, 830, 968
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 5 cut(s) 403, 670, 925, 999, 1093
CspAI ACCGGT 2 cut(s) 155, 1117
CspCI CAANNNNNGTGG 2 cut(s) 1025, 1060
CviAII CATG 7 cut(s) 47, 259, 317, 380, 735, 771, 1077
CviQI GTAC 5 cut(s) 403, 670, 925, 999, 1093
DdeI CTNAG 5 cut(s) 39, 830, 928, 954, 980
DpnI GATC 5 cut(s) 338, 350, 434, 828, 859
DpnII GATC 5 cut(s) 336, 348, 432, 826, 857
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 1020
EclXI CGGCCG 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 954
Eco88I CYCGRG 1 cut(s) 198
EcoRII CCWGG 3 cut(s) 69, 447, 471
EcoT22I ATGCAT 1 cut(s) 776
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 7 cut(s) 50, 262, 320, 383, 738, 774, 1080
FaqI GGGAC 1 cut(s) 28
FatI CATG 7 cut(s) 46, 258, 316, 379, 734, 770, 1076
FauI CCCGC 4 cut(s) 74, 130, 141, 177
FblI GTMKAC 1 cut(s) 943
FokI GGATG 1 cut(s) 1007
FspBI CTAG 2 cut(s) 525, 879
GlaI GCGC 5 cut(s) 51, 218, 220, 363, 548
GsaI CCCAGC 2 cut(s) 146, 460
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 4 cut(s) 84, 152, 168, 197
HapII CCGG 5 cut(s) 156, 199, 242, 340, 1118
HgaI GACGC 3 cut(s) 461, 830, 968
HhaI GCGC 5 cut(s) 52, 219, 221, 364, 549
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 7 cut(s) 50, 262, 320, 383, 738, 774, 1080
Hin6I GCGC 5 cut(s) 50, 217, 219, 362, 547
HinP1I GCGC 5 cut(s) 50, 217, 219, 362, 547
HinfI GANTC 4 cut(s) 11, 41, 89, 901
HpaII CCGG 5 cut(s) 156, 199, 242, 340, 1118
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 2 cut(s) 580, 944
Hpy188I TCNGA 4 cut(s) 10, 97, 429, 820
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 2 cut(s) 580, 944
Hpy99I CGWCG 2 cut(s) 28, 503
HpyAV CCTTC 3 cut(s) 71, 405, 803
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 9 cut(s) 367, 488, 652, 774, 782, 815, 1047, 1073, 1089
HpyF3I CTNAG 5 cut(s) 39, 830, 928, 954, 980
HpySE526I ACGT 1 cut(s) 664
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 7 cut(s) 50, 262, 320, 383, 738, 774, 1080
HspAI GCGC 5 cut(s) 50, 217, 219, 362, 547
Kzo9I GATC 5 cut(s) 336, 348, 432, 826, 857
LmnI GCTCC 5 cut(s) 60, 110, 554, 664, 887
Lsp1109I GCAGC 8 cut(s) 44, 90, 126, 351, 524, 527, 530, 533
LweI GCATC 8 cut(s) 126, 165, 288, 475, 557, 599, 783, 824
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 2 cut(s) 525, 879
MaeII ACGT 1 cut(s) 664
MalI GATC 5 cut(s) 338, 350, 434, 828, 859
MbiI CCGCTC 2 cut(s) 55, 214
MboI GATC 5 cut(s) 336, 348, 432, 826, 857
MboII GAAGA 8 cut(s) 6, 453, 518, 638, 697, 830, 881, 1007
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 2 cut(s) 348, 826
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 783, 933
MlyI GAGTC 2 cut(s) 50, 83
MmeI TCCRAC 2 cut(s) 120, 865
MnlI CCTC 9 cut(s) 16, 68, 103, 110, 181, 423, 949, 985, 1092
Mph1103I ATGCAT 1 cut(s) 776
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 1 cut(s) 1062
MspA1I CMGCKG 2 cut(s) 35, 81
MspI CCGG 5 cut(s) 156, 199, 242, 340, 1118
MspR9I CCNGG 5 cut(s) 71, 199, 200, 449, 473
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 1075
MvaI CCWGG 3 cut(s) 71, 449, 473
MvnI CGCG 4 cut(s) 87, 219, 547, 962
NciI CCSGG 2 cut(s) 199, 200
NdeII GATC 5 cut(s) 336, 348, 432, 826, 857
NlaIII CATG 7 cut(s) 50, 262, 320, 383, 738, 774, 1080
NlaIV GGNNCC 2 cut(s) 106, 169
NmeAIII GCCGAG 1 cut(s) 81
NotI GCGGCCGC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 2 cut(s) 738, 1080
PalAI GGCGCGCC 1 cut(s) 217
PauI GCGCGC 1 cut(s) 217
PciI ACATGT 1 cut(s) 1076
PctI GAATGC 1 cut(s) 1075
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 2 cut(s) 11, 901
PinAI ACCGGT 2 cut(s) 155, 1117
Ple19I CGATCG 1 cut(s) 860
PleI GAGTC 2 cut(s) 49, 83
PpsI GAGTC 2 cut(s) 49, 83
PscI ACATGT 1 cut(s) 1076
Psp6I CCWGG 3 cut(s) 69, 447, 471
PspFI CCCAGC 2 cut(s) 142, 456
PspGI CCWGG 3 cut(s) 69, 447, 471
PspN4I GGNNCC 2 cut(s) 106, 169
PspPI GGNCC 3 cut(s) 150, 167, 196
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 348, 826
PteI GCGCGC 1 cut(s) 217
PvuI CGATCG 1 cut(s) 860
RsaI GTAC 5 cut(s) 404, 671, 926, 1000, 1094
RsaNI GTAC 5 cut(s) 403, 670, 925, 999, 1093
SaqAI TTAA 1 cut(s) 1062
Sau3AI GATC 5 cut(s) 336, 348, 432, 826, 857
Sau96I GGNCC 3 cut(s) 150, 167, 196
SchI GAGTC 2 cut(s) 50, 83
ScrFI CCNGG 5 cut(s) 71, 199, 200, 449, 473
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 102, 477, 526, 667, 814, 955, 1008
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 8 cut(s) 126, 165, 288, 475, 557, 599, 783, 824
SfcI CTRYAG 1 cut(s) 365
SgsI GGCGCGCC 1 cut(s) 217
SmaI CCCGGG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
Sse9I AATT 2 cut(s) 783, 933
SspI AATATT 1 cut(s) 421
SspMI CTAG 2 cut(s) 525, 879
StyD4I CCNGG 5 cut(s) 69, 197, 198, 447, 471
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 667
TaqI TCGA 5 cut(s) 173, 477, 483, 856, 860
TasI AATT 2 cut(s) 783, 933
TatI WGTACW 2 cut(s) 669, 1092
TauI GCSGC 7 cut(s) 32, 38, 55, 84, 87, 197, 217
TfiI GAWTC 2 cut(s) 11, 901
Tru1I TTAA 1 cut(s) 1062
Tru9I TTAA 1 cut(s) 1062
TscAI CASTG 4 cut(s) 374, 582, 871, 925
TseI GCWGC 8 cut(s) 32, 78, 139, 364, 512, 515, 518, 521
TspDTI ATGAA 2 cut(s) 519, 1082
TspMI CCCGGG 1 cut(s) 198
TspRI CASTG 4 cut(s) 374, 582, 871, 925
XceI RCATGY 2 cut(s) 738, 1080
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 669
XmaI CCCGGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 943
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 2 cut(s) 525, 879
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.