Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008516

Physical Location & Seq

Genomic Coordinates Reverse (-)

51623745 .. 51625123

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCTCATCAACACCTCCCTACTAGTCTTATGGGTTCCTTTTCTCCTCCTTCTACCTTTAGTACTGCTGCTTCTGAAAAAGAATGAAAGTCCAAAAAAACACTTCCCGCCAAGCCCTCCTAAGCTTCCCATCATAGGCAACTTACACCAATTTGCACAATCTGGTTCACCAGCTCACCAAAACCTATGGCGTATCACGCAAAAGTTGGGTCCAATCGTCCTCTTACACATCGGTCGCATACTGACCCTCATAATCTCCTCAGCTGAAGCAGCTAAACAAGTCTTGAGAGATAATGACATCCTCAGTTGCAGTAGACCCGCCTCCTCTGGGACTCGAAAAATCACGTGCAACTATCTAGACTTGACATTTGCGCCATACGGTGAGTATTACCGAGAGATAAAAAAGATATGTGTGCTTGAGCTTTTCAGTGTGCAAAGAGTGCACTCATATCGGTCCATTAGGGAAGACGAAGTGGCTAAGATGATTGATTCAATCTATAACGACGTCTCCGCTTCTTCTTCTTCTTCTGTTCATCTCACCGACAAGTTGTTTGCTCTCATGGGAAGCATAATATGCAGGATTGTTTTCGGGACCAGTTTTGAGAAGAGTGATTTCGACCACGACAGATTTCATCGAGTGCTGCAAGGTACTGCAATCATGATTGCAGGCTTCTCTGCAGCTGATTATTTTCCTTCTCGTATCGGGTCGATTATAGACCGGATTTCTGGTAGACATAAAGAGCTTGATAAGTTCTCCAGAGAACATATCGCTTTTTTCAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

262

Amino Acids

29.57

Weight (kDa)

9.47

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 256	2.6e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68070 AT2G01735 AT2G01735
fragaria_vesca	FvH4_4g33530 FvH4_5g19942 FvH4_6g33182
malus_domestica	MD13G1020200.v1.1 MD16G1018400.v1.1
prunus_persica	Prupe.1G333500_v2.0.a1 Prupe.1G333500_v2.0.a1
pyrus_communis	pycom16g01680
rosa_chinensis	RchiOBHm_Chr4g0443041
rosa_laevigata	RLG00000005960
rosa_multiflora	Rmu_co8232139.1_g000001 Rmu_sc0008055.1_g000003 Rmu_sc0015292.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383670
rosa_rugosa	Rorug04G0344000
rosa_samantha	Rh4AG398200 Rh4BG409700 Rh4CG425200 Rh4DG404500
rosa_wichuraiana	Rw4G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	774
AatII	GACGTC	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	774
AccI	GTMKAC	2 cut(s)	316, 733
AciI	CCGC	3 cut(s)	110, 321, 513
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	2 cut(s)	66, 652
AfiI	CCNNNNNNNGG	2 cut(s)	137, 330
AgsI	TTSAA	1 cut(s)	495
AhlI	ACTAGT	1 cut(s)	25
AluBI	AGCT	7 cut(s)	127, 176, 266, 275, 424, 683, 745
AluI	AGCT	7 cut(s)	127, 176, 266, 275, 424, 683, 745
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	514
Alw44I	GTGCAC	1 cut(s)	443
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	4 cut(s)	70, 272, 643, 680
ArsI	GACNNNNNNTTYG	6 cut(s)	196, 228, 353, 385, 536, 568
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	212, 456, 594
AsuHPI	GGTGA	4 cut(s)	162, 170, 395, 532
AvaII	GGWCC	3 cut(s)	212, 456, 594
BaeGI	GKGCMC	1 cut(s)	447
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbrPI	CACGTG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	57, 284, 630, 692
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BcoDI	GTCTC	1 cut(s)	514
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 359
BfmI	CTRYAG	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	774
BisI	GCNGC	4 cut(s)	71, 273, 644, 681
BlsI	GCNGC	4 cut(s)	72, 274, 645, 682
BmcAI	AGTACT	1 cut(s)	66
Bme18I	GGWCC	3 cut(s)	212, 456, 594
BmgT120I	GGNCC	3 cut(s)	212, 456, 594
BmiI	GGNNCC	3 cut(s)	39, 213, 595
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	742
Bpu10I	CCTNAGC	2 cut(s)	123, 262
BpuEI	CTTGAG	2 cut(s)	307, 440
BsaAI	YACGTR	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 330
Bse1I	ACTGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	137, 330
BseMII	CTCAG	2 cut(s)	276, 319
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	3 cut(s)	38, 250, 316
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	57, 284, 630, 692
Bsh1285I	CGRYCG	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	721
BslFI	GGGAC	2 cut(s)	346, 607
BslI	CCNNNNNNNGG	2 cut(s)	137, 330
BsmAI	GTCTC	1 cut(s)	514
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	346, 607
Bsp1286I	GDGCHC	1 cut(s)	447
BspACI	CCGC	3 cut(s)	110, 321, 513
BspCNI	CTCAG	2 cut(s)	275, 318
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	39, 213, 595
BspMAI	CTGCAG	1 cut(s)	682
BspMI	ACCTGC	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	597
BssNI	GRCGYC	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	1 cut(s)	507
BstAPI	GCANNNNNTGC	2 cut(s)	442, 576
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	4 cut(s)	123, 262, 305, 480
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	514
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 272, 442, 576
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	57, 284, 630, 692
BstV2I	GAAGAC	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	436
BveI	ACCTGC	1 cut(s)	774
Cac8I	GCNNGC	1 cut(s)	670
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	212, 456, 594
Csp6I	GTAC	2 cut(s)	65, 651
CviAII	CATG	2 cut(s)	562, 661
CviQI	GTAC	2 cut(s)	65, 651
DdeI	CTNAG	4 cut(s)	123, 262, 305, 480
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco47I	GGWCC	3 cut(s)	212, 456, 594
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	2 cut(s)	565, 664
FaqI	GGGAC	2 cut(s)	346, 607
FatI	CATG	2 cut(s)	561, 660
FauI	CCCGC	2 cut(s)	117, 328
FblI	GTMKAC	2 cut(s)	316, 733
Fnu4HI	GCNGC	4 cut(s)	71, 273, 644, 681
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	71, 273, 644, 681
FspBI	CTAG	2 cut(s)	26, 359
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	71, 273, 644, 681
GsuI	CTGGAG	1 cut(s)	742
HapII	CCGG	1 cut(s)	721
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	565, 664
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	334, 491
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	4 cut(s)	162, 170, 395, 532
Hpy166II	GTNNAC	4 cut(s)	170, 317, 445, 734
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	5 cut(s)	286, 359, 592, 661, 759
Hpy8I	GTNNAC	4 cut(s)	170, 317, 445, 734
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	62, 705
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	347, 507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 272, 442, 576
HpyF3I	CTNAG	4 cut(s)	123, 262, 305, 480
HpySE526I	ACGT	2 cut(s)	347, 507
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	565, 664
HspAI	GCGC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	57, 284, 630, 692
MaeI	CTAG	2 cut(s)	26, 359
MaeII	ACGT	2 cut(s)	347, 507
MboII	GAAGA	6 cut(s)	479, 510, 513, 516, 519, 619
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	28, 59, 129, 233, 260, 271, 314, 334, 337
MspA1I	CMGCKG	2 cut(s)	266, 683
MspI	CCGG	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	199, 272, 442, 576
NlaIII	CATG	2 cut(s)	565, 664
NlaIV	GGNNCC	3 cut(s)	39, 213, 595
PagI	TCATGA	1 cut(s)	660
PaqCI	CACCTGC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	4 cut(s)	72, 274, 645, 682
PleI	GAGTC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	348
PmlI	CACGTG	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	348
PspCI	CACGTG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	39, 213, 595
PspPI	GGNCC	3 cut(s)	212, 456, 594
PstI	CTGCAG	1 cut(s)	682
PvuII	CAGCTG	2 cut(s)	266, 683
RsaI	GTAC	2 cut(s)	66, 652
RsaNI	GTAC	2 cut(s)	65, 651
SatI	GCNGC	4 cut(s)	71, 273, 644, 681
Sau96I	GGNCC	3 cut(s)	212, 456, 594
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	3 cut(s)	212, 456, 594
SmlI	CTYRAG	2 cut(s)	286, 419
SmoI	CTYRAG	2 cut(s)	286, 419
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	110, 321, 513
SspMI	CTAG	2 cut(s)	26, 359
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	350, 510
TaqI	TCGA	4 cut(s)	337, 618, 637, 710
TaqII	GACCGA	2 cut(s)	224, 444
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	491
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	4 cut(s)	70, 272, 643, 680
TspDTI	ATGAA	3 cut(s)	102, 524, 623
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	3 cut(s)	212, 456, 594
XbaI	TCTAGA	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	316, 733
XspI	CTAG	2 cut(s)	26, 359
ZraI	GACGTC	1 cut(s)	508
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.